Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15185

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
3,201,344	+				+0.1
3,201,344	+				-0.1
3,201,344	+				-1.3
3,201,344	+				+0.1
3,201,344	+				-0.7
3,201,344	+				-0.4
3,201,344	+				-0.6
3,201,344	+				+1.3
3,201,345	-				-0.2
3,201,345	-				-0.5
3,201,345	-				-0.3
3,201,345	-				-0.2
3,201,345	-				-1.2
3,201,345	-				+0.3
3,201,345	-				+0.0
3,201,416	+				+0.6
3,201,416	+				-1.1
3,201,417	-				-0.4
3,201,417	-				-0.7
3,201,417	-				-0.2
3,201,417	-				-0.3
3,201,417	-				-0.9
3,201,441	+				-0.1
3,201,442	-				-0.5
3,201,442	-				-0.3
3,201,483	+				+0.3
3,201,484	-				-0.6
3,201,519	+				+0.1
3,201,519	+				+1.3
3,201,519	+				-0.1
3,201,520	-				+0.5
3,201,653	+				+0.1
3,201,653	+				+0.3
3,201,654	-				+0.0
3,201,654	-				+0.6
3,201,654	-				-0.2
3,201,654	-				-2.5
3,201,659	+				-1.1
3,201,659	+				+0.6
3,201,659	+				-0.7
3,201,659	+				-0.1
3,201,660	-				-0.1
3,201,660	-				-0.3
3,201,660	-				+0.4
3,201,910	+		ABZR87_RS15180	0.47	+0.5
3,201,910	+		ABZR87_RS15180	0.47	-0.7
3,201,911	-		ABZR87_RS15180	0.47	+0.2
3,202,026	+		ABZR87_RS15180	0.72	-0.3
3,202,127	+				+0.2
3,202,127	+				+0.0
3,202,127	+				+0.1
3,202,127	+				-1.4
3,202,127	+				-0.3
3,202,127	+				-0.8
3,202,127	+				-0.1
3,202,127	+				+0.5
3,202,127	+				-0.2
3,202,128	-				+0.7
3,202,128	-				+0.0
3,202,399	+		ABZR87_RS15185	0.18	-0.4
3,202,400	+		ABZR87_RS15185	0.18	+0.1
3,202,400	+		ABZR87_RS15185	0.18	+0.6
3,202,401	-		ABZR87_RS15185	0.18	-0.5
3,202,401	-		ABZR87_RS15185	0.18	+0.6
3,202,401	-		ABZR87_RS15185	0.18	-0.4
3,202,401	-		ABZR87_RS15185	0.18	-0.5
3,202,418	+		ABZR87_RS15185	0.22	-0.7
3,202,418	+		ABZR87_RS15185	0.22	+0.4
3,202,419	-		ABZR87_RS15185	0.22	+0.1
3,202,419	-		ABZR87_RS15185	0.22	-0.0
3,202,521	+		ABZR87_RS15185	0.43	-0.5
3,202,521	+		ABZR87_RS15185	0.43	+0.5
3,202,521	+		ABZR87_RS15185	0.43	+0.5
3,202,522	-		ABZR87_RS15185	0.43	-0.1
3,202,522	-		ABZR87_RS15185	0.43	-1.5
3,202,522	-		ABZR87_RS15185	0.43	-0.2
3,202,522	-		ABZR87_RS15185	0.43	+0.9
3,202,566	+		ABZR87_RS15185	0.52	+0.9
3,202,566	+		ABZR87_RS15185	0.52	-0.3
3,202,566	+		ABZR87_RS15185	0.52	-0.8
3,202,567	-		ABZR87_RS15185	0.52	-0.0
3,202,658	+		ABZR87_RS15185	0.71	-0.7
3,202,659	-		ABZR87_RS15185	0.71	+0.5
3,202,659	-		ABZR87_RS15185	0.71	+0.1
3,202,659	-		ABZR87_RS15185	0.71	+0.1
3,202,809	+				-0.2
3,202,809	+				-0.7
3,202,809	+				+0.5
3,202,809	+				+0.0
3,202,809	+				+0.3
3,202,809	+				-0.8
3,202,809	+				-0.2
3,202,809	+				+0.7
3,202,810	-				-0.3
3,202,810	-				-0.3
3,202,810	-				-0.2
3,202,810	-				-0.3
3,202,810	-				-2.2
3,202,810	-				+0.6
3,202,810	-				+0.1
3,202,810	-				-2.7
3,202,810	-				+1.2
3,202,813	+				-2.5
3,202,813	+				-0.4
3,202,813	+				+1.0
3,202,813	+				+0.2
3,202,813	+				-0.9
3,202,814	-				-0.6
3,202,814	-				-0.3
3,202,814	-				-1.3
3,202,814	-				-0.5
3,203,007	+				+0.3
3,203,007	+				-0.1
3,203,007	+				-0.4
3,203,007	+				-1.5
3,203,007	+				+1.1
3,203,007	+				-0.2
3,203,007	+				-0.1
3,203,007	+				-0.1
3,203,008	-				-0.7
3,203,008	-				+1.9
3,203,008	-				-0.8
3,203,008	-				-1.1
3,203,008	-				+0.4
3,203,008	-				+0.3
3,203,008	-				+0.9
3,203,008	-				+0.4
3,203,010	+				-0.4
3,203,010	+				+0.0
3,203,011	-				+0.3
3,203,229	+		ABZR87_RS15190	0.12	+0.8
3,203,229	+		ABZR87_RS15190	0.12	-1.3
3,203,230	-		ABZR87_RS15190	0.12	+0.6
3,203,269	+		ABZR87_RS15190	0.16	+0.5
3,203,269	+		ABZR87_RS15190	0.16	-0.6
3,203,269	+		ABZR87_RS15190	0.16	-0.5
3,203,269	+		ABZR87_RS15190	0.16	+0.2
3,203,269	+		ABZR87_RS15190	0.16	+0.2
3,203,270	-		ABZR87_RS15190	0.16	-0.4
3,203,291	+		ABZR87_RS15190	0.18	-0.9
3,203,292	-		ABZR87_RS15190	0.18	-0.7
3,203,292	-		ABZR87_RS15190	0.18	-0.9
3,203,292	-		ABZR87_RS15190	0.18	-1.0
3,203,311	+		ABZR87_RS15190	0.20	-0.1
3,203,312	-		ABZR87_RS15190	0.20	+0.2
3,203,312	-		ABZR87_RS15190	0.20	+0.3
3,203,312	-		ABZR87_RS15190	0.20	-1.8
3,203,320	+		ABZR87_RS15190	0.21	-1.6
3,203,320	+		ABZR87_RS15190	0.21	-0.2
3,203,320	+		ABZR87_RS15190	0.21	-0.0
3,203,321	-		ABZR87_RS15190	0.21	-1.3
3,203,321	-		ABZR87_RS15190	0.21	+0.8
3,203,321	-		ABZR87_RS15190	0.21	-2.1
3,203,321	-		ABZR87_RS15190	0.21	-0.7
3,203,321	-		ABZR87_RS15190	0.21	-0.7
3,203,415	+		ABZR87_RS15190	0.30	-0.3
3,203,415	+		ABZR87_RS15190	0.30	+0.9
3,203,415	+		ABZR87_RS15190	0.30	-0.2
3,203,416	-		ABZR87_RS15190	0.30	-2.7
3,203,456	-		ABZR87_RS15190	0.34	-1.6
3,203,502	+		ABZR87_RS15190	0.39	+0.1
3,203,503	+		ABZR87_RS15190	0.39	+0.2
3,203,503	+		ABZR87_RS15190	0.39	+1.9
3,203,504	-		ABZR87_RS15190	0.39	-1.2
3,203,504	-		ABZR87_RS15190	0.39	-0.2
3,203,504	-		ABZR87_RS15190	0.39	-0.4
3,203,599	+		ABZR87_RS15190	0.48	-1.5
3,203,600	-		ABZR87_RS15190	0.48	+0.0
3,203,600	-		ABZR87_RS15190	0.48	+0.2
3,203,792	+		ABZR87_RS15190	0.67	+1.0
3,203,793	-		ABZR87_RS15190	0.67	-0.6