Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13390

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
2,836,499	+		ABZR87_RS13380	0.77	+0.5
2,836,499	+		ABZR87_RS13380	0.77	+0.6
2,836,499	+		ABZR87_RS13380	0.77	+0.3
2,836,499	+		ABZR87_RS13380	0.77	+2.0
2,836,500	-		ABZR87_RS13380	0.77	+0.3
2,836,500	-		ABZR87_RS13380	0.77	+1.1
2,836,500	-		ABZR87_RS13380	0.77	-0.1
2,836,500	-		ABZR87_RS13380	0.77	+1.0
2,836,500	-		ABZR87_RS13380	0.77	-1.5
2,836,500	-		ABZR87_RS13380	0.77	-1.1
2,836,666	+				+0.2
2,836,666	+				-0.9
2,836,666	+				+0.4
2,836,666	+				-0.8
2,836,697	+				+0.0
2,836,697	+				+0.2
2,836,697	+				+0.1
2,836,697	+				+1.0
2,836,697	+				-0.6
2,836,697	+				-0.3
2,836,698	-				-0.4
2,836,698	-				-0.0
2,836,698	-				-0.0
2,836,698	-				-0.1
2,836,698	-				+1.3
2,836,698	-				-0.1
2,836,698	-				-1.7
2,836,698	-				-0.2
2,836,713	-				-0.4
2,836,713	-				-0.0
2,836,724	+				+0.2
2,836,724	+				+0.4
2,836,724	+				+0.3
2,836,724	+				+1.4
2,836,724	+				+0.0
2,836,724	+				-1.0
2,836,725	-				+0.4
2,836,725	-				-0.3
2,836,790	+		ABZR87_RS13385	0.18	+0.6
2,836,791	-		ABZR87_RS13385	0.18	-0.4
2,836,791	-		ABZR87_RS13385	0.18	+0.1
2,836,838	+		ABZR87_RS13385	0.24	-0.1
2,836,838	+		ABZR87_RS13385	0.24	+0.0
2,836,838	+		ABZR87_RS13385	0.24	+0.3
2,836,838	+		ABZR87_RS13385	0.24	-0.1
2,836,898	+		ABZR87_RS13385	0.32	-1.0
2,836,899	-		ABZR87_RS13385	0.32	-0.1
2,836,973	+		ABZR87_RS13385	0.41	+0.1
2,836,973	+		ABZR87_RS13385	0.41	-1.3
2,836,974	-		ABZR87_RS13385	0.42	-0.9
2,836,974	-		ABZR87_RS13385	0.42	-0.1
2,836,974	-		ABZR87_RS13385	0.42	+0.0
2,836,974	-		ABZR87_RS13385	0.42	+1.0
2,836,974	-		ABZR87_RS13385	0.42	-0.0
2,836,974	-		ABZR87_RS13385	0.42	+0.9
2,836,974	-		ABZR87_RS13385	0.42	-1.1
2,836,988	+		ABZR87_RS13385	0.43	+0.8
2,836,988	+		ABZR87_RS13385	0.43	+2.0
2,836,988	+		ABZR87_RS13385	0.43	+0.7
2,836,988	+		ABZR87_RS13385	0.43	-0.8
2,836,988	+		ABZR87_RS13385	0.43	-0.7
2,836,988	+		ABZR87_RS13385	0.43	-0.8
2,836,989	-		ABZR87_RS13385	0.43	-0.4
2,836,989	-		ABZR87_RS13385	0.43	-0.0
2,836,997	+		ABZR87_RS13385	0.45	-1.2
2,837,060	+		ABZR87_RS13385	0.53	-0.2
2,837,060	+		ABZR87_RS13385	0.53	+0.3
2,837,060	+		ABZR87_RS13385	0.53	-0.4
2,837,060	+		ABZR87_RS13385	0.53	-0.1
2,837,060	+		ABZR87_RS13385	0.53	-0.6
2,837,060	+		ABZR87_RS13385	0.53	+0.2
2,837,195	+		ABZR87_RS13385	0.70	-0.8
2,837,195	+		ABZR87_RS13385	0.70	+0.4
2,837,195	+		ABZR87_RS13385	0.70	+0.1
2,837,196	-		ABZR87_RS13385	0.70	-0.2
2,837,196	-		ABZR87_RS13385	0.70	-0.0
2,837,205	-		ABZR87_RS13385	0.72	+3.6
2,837,240	+		ABZR87_RS13385	0.76	-0.6
2,837,240	+		ABZR87_RS13385	0.76	-0.2
2,837,240	+		ABZR87_RS13385	0.76	+0.0
2,837,240	+		ABZR87_RS13385	0.76	+0.4
2,837,240	+		ABZR87_RS13385	0.76	+0.7
2,837,240	+		ABZR87_RS13385	0.76	+0.1
2,837,240	+		ABZR87_RS13385	0.76	-1.2
2,837,241	-		ABZR87_RS13385	0.76	-0.2
2,837,241	-		ABZR87_RS13385	0.76	-0.3
2,837,241	-		ABZR87_RS13385	0.76	+0.3
2,837,241	-		ABZR87_RS13385	0.76	+0.1
2,837,241	-		ABZR87_RS13385	0.76	-0.4
2,837,241	-		ABZR87_RS13385	0.76	+0.2
2,837,241	-		ABZR87_RS13385	0.76	-0.8
2,837,288	+		ABZR87_RS13385	0.82	+0.1
2,837,288	+		ABZR87_RS13385	0.82	+0.4
2,837,288	+		ABZR87_RS13385	0.82	-0.6
2,837,288	+		ABZR87_RS13385	0.82	-0.2
2,837,289	-		ABZR87_RS13385	0.83	-0.8
2,837,289	-		ABZR87_RS13385	0.83	-0.3
2,837,289	-		ABZR87_RS13385	0.83	+0.7
2,837,289	-		ABZR87_RS13385	0.83	-0.7
2,837,289	-		ABZR87_RS13385	0.83	+0.3
2,837,294	+		ABZR87_RS13385	0.83	+2.0
2,837,295	-		ABZR87_RS13385	0.83	+0.3
2,837,295	-		ABZR87_RS13385	0.83	-0.6
2,837,333	+		ABZR87_RS13385	0.88	-2.9
2,837,333	+		ABZR87_RS13385	0.88	+0.6
2,837,333	+		ABZR87_RS13385	0.88	+0.8
2,837,333	+		ABZR87_RS13385	0.88	+0.1
2,837,333	+		ABZR87_RS13385	0.88	-1.5
2,837,334	-		ABZR87_RS13385	0.88	-0.5
2,837,463	+		ABZR87_RS13390	0.24	-0.6
2,837,463	+		ABZR87_RS13390	0.24	+0.1
2,837,463	+		ABZR87_RS13390	0.24	-1.0
2,837,464	-		ABZR87_RS13390	0.24	-0.8
2,837,490	+		ABZR87_RS13390	0.40	-0.3
2,837,490	+		ABZR87_RS13390	0.40	-0.7
2,837,730	+		ABZR87_RS13395	0.40	+0.7
2,837,731	-		ABZR87_RS13395	0.40	-0.8
2,837,731	-		ABZR87_RS13395	0.40	+0.8
2,837,757	+		ABZR87_RS13395	0.48	-0.3
2,837,758	-		ABZR87_RS13395	0.49	-0.8
2,837,758	-		ABZR87_RS13395	0.49	-0.1
2,837,810	+		ABZR87_RS13395	0.65	-0.0
2,837,810	+		ABZR87_RS13395	0.65	+0.3
2,837,811	-		ABZR87_RS13395	0.65	-0.4
2,837,855	+		ABZR87_RS13395	0.79	+1.2
2,837,855	+		ABZR87_RS13395	0.79	-2.1
2,837,855	+		ABZR87_RS13395	0.79	-0.3
2,837,855	+		ABZR87_RS13395	0.79	+0.4
2,837,856	-		ABZR87_RS13395	0.80	-0.1
2,837,856	-		ABZR87_RS13395	0.80	+0.5
2,837,888	+				-1.4
2,837,940	+				-0.5
2,837,941	-				+0.0
2,837,955	+				+0.5
2,837,956	-				-0.6
2,837,956	-				+0.4
2,837,956	-				-0.4
2,837,990	+				-0.1
2,837,990	+				+0.1
2,837,991	-				+0.6
2,837,991	-				-0.4
2,838,019	-		ABZR87_RS13400	0.11	-0.9
2,838,292	+				-2.3
2,838,292	+				+0.2
2,838,292	+				-0.5
2,838,292	+				-1.5
2,838,338	+				+1.0
2,838,338	+				-0.6
2,838,339	-				-0.3
2,838,425	+		ABZR87_RS13405	0.11	-0.1
2,838,426	-		ABZR87_RS13405	0.11	-1.7
2,838,436	+		ABZR87_RS13405	0.12	-0.2
2,838,533	+		ABZR87_RS13405	0.19	-0.2
2,838,533	+		ABZR87_RS13405	0.19	-0.3
2,838,533	+		ABZR87_RS13405	0.19	-1.4