Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13250

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
2,807,639	-		ABZR87_RS13245	0.26	-1.4
2,807,747	-		ABZR87_RS13245	0.35	+0.9
2,807,747	-		ABZR87_RS13245	0.35	+0.4
2,807,954	-		ABZR87_RS13245	0.53	-0.7
2,807,978	+		ABZR87_RS13245	0.55	+0.4
2,807,978	+		ABZR87_RS13245	0.55	+0.2
2,807,979	-		ABZR87_RS13245	0.55	-0.3
2,808,113	+		ABZR87_RS13245	0.66	-1.0
2,808,175	+		ABZR87_RS13245	0.71	-0.1
2,808,176	-		ABZR87_RS13245	0.71	+0.4
2,808,341	-		ABZR87_RS13245	0.85	-1.3
2,808,433	+				-0.7
2,808,433	+				-0.4
2,808,433	+				-0.1
2,808,434	-				+0.1
2,808,524	+				-0.5
2,808,524	+				+1.0
2,808,524	+				-0.2
2,808,525	-				-0.4
2,808,525	-				+0.4
2,808,577	+				-1.2
2,808,582	+				-0.3
2,808,582	+				-0.2
2,808,583	-				-1.0
2,808,711	+				+0.7
2,808,711	+				-0.8
2,808,712	-				+0.4
2,808,712	-				-2.1
2,808,816	+		ABZR87_RS13250	0.22	-1.1
2,808,944	-		ABZR87_RS13250	0.37	-0.7
2,808,944	-		ABZR87_RS13250	0.37	+0.2
2,809,273	+		ABZR87_RS13250	0.75	-0.6
2,809,486	-				-1.1
2,809,486	-				-0.6
2,809,486	-				-1.2
2,809,563	+				+0.3
2,809,564	-				+0.5
2,809,564	-				-0.6
2,809,611	+		ABZR87_RS13255	0.11	-2.3
2,809,611	+		ABZR87_RS13255	0.11	+0.4
2,809,611	+		ABZR87_RS13255	0.11	-0.3
2,809,611	+		ABZR87_RS13255	0.11	+1.3
2,809,612	-		ABZR87_RS13255	0.11	+0.2
2,809,612	-		ABZR87_RS13255	0.11	-0.2
2,809,612	-		ABZR87_RS13255	0.11	-0.1
2,809,645	+		ABZR87_RS13255	0.14	+0.3
2,809,812	+		ABZR87_RS13255	0.30	-1.8
2,809,812	+		ABZR87_RS13255	0.30	-0.0
2,809,813	-		ABZR87_RS13255	0.30	+0.4
2,809,813	-		ABZR87_RS13255	0.30	+0.9
2,809,813	-		ABZR87_RS13255	0.30	-0.6
2,809,813	-		ABZR87_RS13255	0.30	-0.5
2,809,866	-		ABZR87_RS13255	0.35	-0.4
2,809,914	+		ABZR87_RS13255	0.40	+0.0
2,809,914	+		ABZR87_RS13255	0.40	-2.5
2,810,073	+		ABZR87_RS13255	0.55	+0.3
2,810,073	+		ABZR87_RS13255	0.55	-0.3
2,810,073	+		ABZR87_RS13255	0.55	+0.1
2,810,074	-		ABZR87_RS13255	0.55	-3.0
2,810,074	-		ABZR87_RS13255	0.55	-1.4
2,810,074	-		ABZR87_RS13255	0.55	+0.2
2,810,074	-		ABZR87_RS13255	0.55	+0.3
2,810,074	-		ABZR87_RS13255	0.55	+0.4
2,810,074	-		ABZR87_RS13255	0.55	-0.0
2,810,226	+		ABZR87_RS13255	0.69	-0.7
2,810,227	-		ABZR87_RS13255	0.69	+0.0
2,810,245	+		ABZR87_RS13255	0.71	+0.0
2,810,245	+		ABZR87_RS13255	0.71	+0.1
2,810,246	-		ABZR87_RS13255	0.71	+0.1
2,810,246	-		ABZR87_RS13255	0.71	-0.6
2,810,331	+		ABZR87_RS13255	0.79	+0.7
2,810,331	+		ABZR87_RS13255	0.79	+0.3
2,810,332	-		ABZR87_RS13255	0.79	-0.9
2,810,332	-		ABZR87_RS13255	0.79	+0.2
2,810,428	-		ABZR87_RS13255	0.88	-0.1
2,810,469	+				-0.1
2,810,469	+				-0.9
2,810,469	+				-1.4
2,810,469	+				+0.3
2,810,469	+				-0.6
2,810,470	-				-0.7
2,810,470	-				+1.0
2,810,470	-				-0.2