Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS12615

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
2,671,227	-		ABZR87_RS12610	0.25	+0.3
2,671,508	+		ABZR87_RS12610	0.46	+0.9
2,671,586	+		ABZR87_RS12610	0.52	-1.3
2,671,586	+		ABZR87_RS12610	0.52	-1.8
2,671,587	-		ABZR87_RS12610	0.52	+1.6
2,671,587	-		ABZR87_RS12610	0.52	+0.2
2,671,587	-		ABZR87_RS12610	0.52	+0.2
2,671,587	-		ABZR87_RS12610	0.52	+1.0
2,671,628	+		ABZR87_RS12610	0.55	+0.7
2,671,628	+		ABZR87_RS12610	0.55	+0.0
2,671,629	-		ABZR87_RS12610	0.55	-1.3
2,671,631	+		ABZR87_RS12610	0.55	+0.6
2,671,631	+		ABZR87_RS12610	0.55	-0.8
2,671,632	-		ABZR87_RS12610	0.55	+0.2
2,671,632	-		ABZR87_RS12610	0.55	-1.3
2,671,632	-		ABZR87_RS12610	0.55	+1.3
2,671,812	-		ABZR87_RS12610	0.69	-0.4
2,671,958	+		ABZR87_RS12610	0.80	+0.6
2,671,959	-		ABZR87_RS12610	0.80	-2.4
2,672,009	+		ABZR87_RS12610	0.84	+1.0
2,672,010	-		ABZR87_RS12610	0.84	+0.0
2,672,228	+				-0.8
2,672,229	-				-0.7
2,672,291	+				+0.7
2,672,291	+				-1.6
2,672,292	-				+0.6
2,672,820	-		ABZR87_RS12615	0.63	-0.3
2,672,871	-		ABZR87_RS12615	0.68	-0.8
2,673,008	+		ABZR87_RS12615	0.82	-0.1
2,673,023	+		ABZR87_RS12615	0.84	-1.2
2,673,032	+		ABZR87_RS12615	0.85	-2.1
2,673,033	-		ABZR87_RS12615	0.85	+0.2
2,673,047	+		ABZR87_RS12615	0.86	-0.7
2,673,048	-		ABZR87_RS12615	0.87	-1.3
2,673,303	+				+0.6
2,673,303	+				+0.7
2,673,348	+				+1.4
2,673,349	-				-0.2
2,673,349	-				+0.1
2,673,349	-				-0.3
2,673,381	+				-0.4
2,673,597	+		ABZR87_RS12620	0.23	+0.6
2,673,612	+		ABZR87_RS12620	0.25	-0.3
2,673,613	-		ABZR87_RS12620	0.25	-1.0
2,673,615	+		ABZR87_RS12620	0.25	-1.7
2,673,615	+		ABZR87_RS12620	0.25	+0.2
2,673,615	+		ABZR87_RS12620	0.25	-1.0
2,673,616	-		ABZR87_RS12620	0.25	-0.7
2,673,616	-		ABZR87_RS12620	0.25	+1.4
2,673,666	+		ABZR87_RS12620	0.29	+1.1
2,673,759	+		ABZR87_RS12620	0.36	-0.0
2,673,760	-		ABZR87_RS12620	0.36	-1.2
2,673,762	+		ABZR87_RS12620	0.37	+2.0
2,673,762	+		ABZR87_RS12620	0.37	-1.0
2,673,762	+		ABZR87_RS12620	0.37	-0.6
2,673,762	+		ABZR87_RS12620	0.37	+0.0
2,673,762	+		ABZR87_RS12620	0.37	-0.1
2,673,762	+		ABZR87_RS12620	0.37	-0.3
2,673,762	+		ABZR87_RS12620	0.37	-0.4
2,673,763	-		ABZR87_RS12620	0.37	+1.4
2,673,763	-		ABZR87_RS12620	0.37	+0.0
2,673,763	-		ABZR87_RS12620	0.37	-0.8
2,673,763	-		ABZR87_RS12620	0.37	-0.7
2,673,763	-		ABZR87_RS12620	0.37	+0.2
2,673,763	-		ABZR87_RS12620	0.37	-0.2
2,673,763	-		ABZR87_RS12620	0.37	-0.6
2,673,766	+		ABZR87_RS12620	0.37	-1.9
2,673,766	+		ABZR87_RS12620	0.37	-0.6
2,673,766	+		ABZR87_RS12620	0.37	+0.2
2,673,766	+		ABZR87_RS12620	0.37	+0.1
2,673,767	-		ABZR87_RS12620	0.37	-0.1
2,673,767	-		ABZR87_RS12620	0.37	-0.2
2,673,768	+		ABZR87_RS12620	0.37	+1.8
2,673,768	+		ABZR87_RS12620	0.37	+0.1
2,673,768	+		ABZR87_RS12620	0.37	-0.2
2,673,768	+		ABZR87_RS12620	0.37	+0.5
2,673,768	+		ABZR87_RS12620	0.37	-1.1
2,673,769	-		ABZR87_RS12620	0.37	+0.2
2,673,769	-		ABZR87_RS12620	0.37	+0.0
2,673,769	-		ABZR87_RS12620	0.37	-0.9
2,673,883	-		ABZR87_RS12620	0.46	+0.4
2,673,883	-		ABZR87_RS12620	0.46	-0.3
2,673,883	-		ABZR87_RS12620	0.46	-0.1
2,673,883	-		ABZR87_RS12620	0.46	-0.7
2,674,110	+		ABZR87_RS12620	0.64	-0.1
2,674,110	+		ABZR87_RS12620	0.64	-1.2
2,674,111	-		ABZR87_RS12620	0.64	-0.1
2,674,153	-		ABZR87_RS12620	0.68	+0.4
2,674,161	+		ABZR87_RS12620	0.68	-0.4
2,674,162	-		ABZR87_RS12620	0.68	-0.1