Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11180

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
2,370,480	+		ABZR87_RS11165	0.72	-0.6
2,370,480	+		ABZR87_RS11165	0.72	+0.2
2,371,073	-		ABZR87_RS11170	0.66	-1.2
2,371,229	+		ABZR87_RS11175	0.32	-0.4
2,371,229	+		ABZR87_RS11175	0.32	-0.3
2,371,230	-		ABZR87_RS11175	0.33	-1.5
2,371,230	-		ABZR87_RS11175	0.33	-1.2
2,371,230	-		ABZR87_RS11175	0.33	+0.9
2,371,230	-		ABZR87_RS11175	0.33	-0.7
2,371,230	-		ABZR87_RS11175	0.33	+0.2
2,371,288	+		ABZR87_RS11175	0.55	+0.4
2,371,289	-		ABZR87_RS11175	0.56	-0.6
2,371,289	-		ABZR87_RS11175	0.56	+1.5
2,371,289	-		ABZR87_RS11175	0.56	+0.6
2,371,348	+		ABZR87_RS11175	0.79	+0.6
2,371,348	+		ABZR87_RS11175	0.79	+0.2
2,371,348	+		ABZR87_RS11175	0.79	+1.8
2,371,348	+		ABZR87_RS11175	0.79	+1.2
2,371,348	+		ABZR87_RS11175	0.79	+2.0
2,371,348	+		ABZR87_RS11175	0.79	-0.3
2,371,348	+		ABZR87_RS11175	0.79	-1.3
2,371,348	+		ABZR87_RS11175	0.79	-0.2
2,371,348	+		ABZR87_RS11175	0.79	+0.1
2,371,349	-		ABZR87_RS11175	0.79	+1.3
2,371,349	-		ABZR87_RS11175	0.79	+0.9
2,371,349	-		ABZR87_RS11175	0.79	-0.5
2,371,349	-		ABZR87_RS11175	0.79	-0.2
2,371,349	-		ABZR87_RS11175	0.79	+0.4
2,371,352	+		ABZR87_RS11175	0.80	-0.3
2,371,353	-		ABZR87_RS11175	0.81	-2.3
2,371,419	+				-0.4
2,371,420	-				+0.0
2,371,563	-		ABZR87_RS11180	0.19	+1.0
2,371,852	-		ABZR87_RS11180	0.59	-2.1
2,371,852	-		ABZR87_RS11180	0.59	+0.4
2,371,964	+		ABZR87_RS11180	0.74	-0.3
2,371,964	+		ABZR87_RS11180	0.74	+0.0
2,371,964	+		ABZR87_RS11180	0.74	+0.7
2,371,965	-		ABZR87_RS11180	0.74	+0.7
2,371,965	-		ABZR87_RS11180	0.74	+1.5
2,371,994	+		ABZR87_RS11180	0.78	-0.5
2,371,994	+		ABZR87_RS11180	0.78	-0.5
2,371,995	-		ABZR87_RS11180	0.78	+0.4
2,371,995	-		ABZR87_RS11180	0.78	+0.1
2,372,014	-		ABZR87_RS11180	0.81	+0.2
2,372,014	-		ABZR87_RS11180	0.81	+2.6
2,372,099	-				+0.4
2,372,130	+				+1.9
2,372,188	+				+0.7
2,372,212	+				+0.0
2,372,212	+				+1.3
2,372,212	+				-0.0
2,372,213	-				+1.3
2,372,213	-				-2.7
2,372,213	-				+0.5
2,372,213	-				-0.2
2,372,215	+				+1.0
2,372,215	+				-0.5
2,372,215	+				-0.4
2,372,216	-				-0.4
2,372,216	-				-0.1
2,372,270	+				-1.8
2,372,270	+				-0.4
2,372,270	+				+1.0
2,372,271	-				-0.6
2,372,511	+		ABZR87_RS11185	0.24	-2.0
2,372,511	+		ABZR87_RS11185	0.24	+1.5
2,372,511	+		ABZR87_RS11185	0.24	-2.2
2,372,511	+		ABZR87_RS11185	0.24	+0.7
2,372,511	+		ABZR87_RS11185	0.24	+1.4
2,372,511	+		ABZR87_RS11185	0.24	+0.5
2,372,512	-		ABZR87_RS11185	0.24	+1.3
2,372,512	-		ABZR87_RS11185	0.24	+1.4
2,372,512	-		ABZR87_RS11185	0.24	-0.1
2,372,512	-		ABZR87_RS11185	0.24	-0.2
2,372,512	-		ABZR87_RS11185	0.24	-0.4
2,372,512	-		ABZR87_RS11185	0.24	+2.0
2,372,512	-		ABZR87_RS11185	0.24	+0.1
2,372,614	+		ABZR87_RS11185	0.38	+0.2
2,372,614	+		ABZR87_RS11185	0.38	+0.9
2,372,615	-		ABZR87_RS11185	0.38	-0.2
2,372,615	-		ABZR87_RS11185	0.38	+0.3
2,372,615	-		ABZR87_RS11185	0.38	+0.3
2,372,623	-		ABZR87_RS11185	0.39	+0.2
2,372,657	+		ABZR87_RS11185	0.44	-1.8
2,372,772	+		ABZR87_RS11185	0.59	-0.1
2,372,772	+		ABZR87_RS11185	0.59	+0.8
2,372,772	+		ABZR87_RS11185	0.59	-0.4
2,372,772	+		ABZR87_RS11185	0.59	-0.1
2,372,774	+		ABZR87_RS11185	0.60	+0.5
2,372,774	+		ABZR87_RS11185	0.60	+0.1
2,372,774	+		ABZR87_RS11185	0.60	-0.2
2,372,775	-		ABZR87_RS11185	0.60	+0.5
2,372,775	-		ABZR87_RS11185	0.60	-0.4
2,372,775	-		ABZR87_RS11185	0.60	+0.6
2,372,817	+		ABZR87_RS11185	0.65	+0.5
2,372,817	+		ABZR87_RS11185	0.65	-0.3
2,372,818	-		ABZR87_RS11185	0.65	+0.5
2,372,818	-		ABZR87_RS11185	0.65	-1.1
2,372,908	+		ABZR87_RS11185	0.78	+0.6
2,372,908	+		ABZR87_RS11185	0.78	+4.0
2,372,909	-		ABZR87_RS11185	0.78	+0.7
2,372,909	-		ABZR87_RS11185	0.78	+2.0
2,372,909	-		ABZR87_RS11185	0.78	+1.1
2,373,072	+				-0.6
2,373,072	+				-0.3
2,373,072	+				-0.7
2,373,072	+				+0.4
2,373,072	+				-1.6
2,373,073	-				+1.2
2,373,073	-				-0.0
2,373,073	-				+0.9
2,373,073	-				-2.7
2,373,073	-				+0.9
2,373,073	-				-0.7
2,373,080	+				-0.2
2,373,080	+				-0.6
2,373,081	-				-0.6