Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11165

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
2,368,489	+				+0.4
2,368,489	+				+0.1
2,368,490	-				+0.2
2,368,490	-				-1.2
2,368,534	+				-1.2
2,368,534	+				-1.1
2,368,535	-				+1.7
2,368,537	+				-0.3
2,368,537	+				-0.6
2,368,537	+				+0.4
2,368,537	+				+2.3
2,368,538	-				-1.3
2,368,538	-				+0.4
2,368,538	-				-0.4
2,368,538	-				+1.0
2,368,538	-				-0.9
2,368,538	-				+1.4
2,368,739	-		ABZR87_RS11160	0.25	+0.8
2,368,768	+		ABZR87_RS11160	0.29	+0.7
2,368,768	+		ABZR87_RS11160	0.29	+0.6
2,368,769	-		ABZR87_RS11160	0.29	+1.0
2,368,850	-		ABZR87_RS11160	0.37	-2.4
2,368,850	-		ABZR87_RS11160	0.37	+0.3
2,368,858	+		ABZR87_RS11160	0.38	-0.1
2,369,119	+		ABZR87_RS11160	0.67	+0.2
2,369,119	+		ABZR87_RS11160	0.67	-0.7
2,369,120	-		ABZR87_RS11160	0.67	+0.0
2,369,272	+		ABZR87_RS11160	0.83	+0.0
2,369,273	-		ABZR87_RS11160	0.83	-1.3
2,369,273	-		ABZR87_RS11160	0.83	+0.6
2,369,384	-				+0.2
2,369,384	-				+0.6
2,369,403	+				-0.1
2,369,404	-				-0.2
2,369,512	-				-0.1
2,369,532	+				-0.2
2,369,532	+				-0.4
2,369,604	+		ABZR87_RS11165	0.12	-0.4
2,369,604	+		ABZR87_RS11165	0.12	+0.3
2,369,605	-		ABZR87_RS11165	0.12	+0.5
2,369,674	-		ABZR87_RS11165	0.17	-0.4
2,369,674	-		ABZR87_RS11165	0.17	+0.0
2,369,713	-		ABZR87_RS11165	0.20	+2.3
2,369,811	+		ABZR87_RS11165	0.26	-0.0
2,369,811	+		ABZR87_RS11165	0.26	+0.4
2,369,812	-		ABZR87_RS11165	0.27	+1.3
2,369,950	+		ABZR87_RS11165	0.36	+0.8
2,369,951	-		ABZR87_RS11165	0.36	+0.9
2,369,951	-		ABZR87_RS11165	0.36	-0.0
2,370,057	+		ABZR87_RS11165	0.43	-0.1
2,370,058	-		ABZR87_RS11165	0.43	-1.5
2,370,058	-		ABZR87_RS11165	0.43	-0.3
2,370,058	-		ABZR87_RS11165	0.43	+0.3
2,370,111	+		ABZR87_RS11165	0.47	-0.1
2,370,111	+		ABZR87_RS11165	0.47	-0.8
2,370,159	-		ABZR87_RS11165	0.50	+0.7
2,370,162	+		ABZR87_RS11165	0.50	+1.0
2,370,163	-		ABZR87_RS11165	0.50	-1.9
2,370,163	-		ABZR87_RS11165	0.50	+0.4
2,370,163	-		ABZR87_RS11165	0.50	+1.7
2,370,175	-		ABZR87_RS11165	0.51	+0.0
2,370,316	-		ABZR87_RS11165	0.61	-0.8
2,370,316	-		ABZR87_RS11165	0.61	+1.4
2,370,316	-		ABZR87_RS11165	0.61	-1.4
2,370,400	-		ABZR87_RS11165	0.67	+2.8
2,370,401	+		ABZR87_RS11165	0.67	-0.9
2,370,402	-		ABZR87_RS11165	0.67	-0.2
2,370,402	-		ABZR87_RS11165	0.67	+1.5
2,370,402	-		ABZR87_RS11165	0.67	+0.3
2,370,402	-		ABZR87_RS11165	0.67	+0.5
2,370,402	-		ABZR87_RS11165	0.67	-1.5
2,370,402	-		ABZR87_RS11165	0.67	+0.5
2,370,402	-		ABZR87_RS11165	0.67	+0.4
2,370,480	+		ABZR87_RS11165	0.72	-0.6
2,370,480	+		ABZR87_RS11165	0.72	+0.2
2,371,073	-		ABZR87_RS11170	0.66	-1.2
2,371,229	+		ABZR87_RS11175	0.32	-0.4
2,371,229	+		ABZR87_RS11175	0.32	-0.3
2,371,230	-		ABZR87_RS11175	0.33	-1.5
2,371,230	-		ABZR87_RS11175	0.33	-1.2
2,371,230	-		ABZR87_RS11175	0.33	+0.9
2,371,230	-		ABZR87_RS11175	0.33	-0.7
2,371,230	-		ABZR87_RS11175	0.33	+0.2
2,371,288	+		ABZR87_RS11175	0.55	+0.4
2,371,289	-		ABZR87_RS11175	0.56	-0.6
2,371,289	-		ABZR87_RS11175	0.56	+1.5
2,371,289	-		ABZR87_RS11175	0.56	+0.6
2,371,348	+		ABZR87_RS11175	0.79	+0.6
2,371,348	+		ABZR87_RS11175	0.79	+0.2
2,371,348	+		ABZR87_RS11175	0.79	+1.8
2,371,348	+		ABZR87_RS11175	0.79	+1.2
2,371,348	+		ABZR87_RS11175	0.79	+2.0
2,371,348	+		ABZR87_RS11175	0.79	-0.3
2,371,348	+		ABZR87_RS11175	0.79	-1.3
2,371,348	+		ABZR87_RS11175	0.79	-0.2
2,371,348	+		ABZR87_RS11175	0.79	+0.1
2,371,349	-		ABZR87_RS11175	0.79	+1.3
2,371,349	-		ABZR87_RS11175	0.79	+0.9
2,371,349	-		ABZR87_RS11175	0.79	-0.5
2,371,349	-		ABZR87_RS11175	0.79	-0.2
2,371,349	-		ABZR87_RS11175	0.79	+0.4
2,371,352	+		ABZR87_RS11175	0.80	-0.3
2,371,353	-		ABZR87_RS11175	0.81	-2.3
2,371,419	+				-0.4
2,371,420	-				+0.0
2,371,563	-		ABZR87_RS11180	0.19	+1.0
2,371,852	-		ABZR87_RS11180	0.59	-2.1
2,371,852	-		ABZR87_RS11180	0.59	+0.4