Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11125

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
2,361,060	+				+0.1
2,361,060	+				-0.1
2,361,060	+				-0.1
2,361,064	+				+0.4
2,361,065	-				+0.1
2,361,186	+				+0.0
2,361,187	-				+1.8
2,361,187	-				+1.9
2,361,190	+				+0.2
2,361,191	-				+0.8
2,361,191	-				+0.0
2,361,213	+				-0.6
2,361,348	+		ABZR87_RS11125	0.16	-0.3
2,361,349	-		ABZR87_RS11125	0.16	+1.7
2,361,349	-		ABZR87_RS11125	0.16	-1.3
2,361,399	+		ABZR87_RS11125	0.21	-0.8
2,361,399	+		ABZR87_RS11125	0.21	+0.2
2,361,399	+		ABZR87_RS11125	0.21	+0.0
2,361,400	-		ABZR87_RS11125	0.21	-1.6
2,361,400	-		ABZR87_RS11125	0.21	+1.0
2,361,400	-		ABZR87_RS11125	0.21	-0.8
2,361,400	-		ABZR87_RS11125	0.21	-1.0
2,361,400	-		ABZR87_RS11125	0.21	-0.8
2,361,400	-		ABZR87_RS11125	0.21	-0.1
2,361,401	+		ABZR87_RS11125	0.21	+1.3
2,361,402	-		ABZR87_RS11125	0.21	-0.7
2,361,402	-		ABZR87_RS11125	0.21	-2.8
2,361,795	+		ABZR87_RS11125	0.57	-2.0
2,361,796	-		ABZR87_RS11125	0.57	+0.4
2,361,796	-		ABZR87_RS11125	0.57	+0.4
2,361,796	-		ABZR87_RS11125	0.57	+0.4
2,361,796	-		ABZR87_RS11125	0.57	+1.0
2,361,798	+		ABZR87_RS11125	0.57	+1.3
2,361,799	-		ABZR87_RS11125	0.57	-1.7
2,361,799	-		ABZR87_RS11125	0.57	-0.6
2,361,845	+		ABZR87_RS11125	0.62	-0.6
2,361,846	+		ABZR87_RS11125	0.62	+0.9
2,361,917	+		ABZR87_RS11125	0.68	-0.3
2,361,984	+		ABZR87_RS11125	0.74	-2.1
2,362,095	+		ABZR87_RS11125	0.84	+0.0
2,362,096	-		ABZR87_RS11125	0.85	+0.1
2,362,150	-		ABZR87_RS11125	0.89	+1.2
2,362,250	+				-1.5
2,362,250	+				-0.6
2,362,250	+				+0.8
2,362,250	+				+0.6
2,362,251	-				-1.9
2,362,251	-				+0.2
2,362,251	-				-0.3
2,362,295	-				+0.1
2,362,295	-				-0.2
2,362,295	-				-0.1
2,362,558	+		ABZR87_RS11130	0.31	-0.3
2,362,558	+		ABZR87_RS11130	0.31	+0.3
2,362,559	-		ABZR87_RS11130	0.32	+0.4
2,362,889	+		ABZR87_RS11130	0.71	-0.3
2,362,889	+		ABZR87_RS11130	0.71	+0.5
2,362,889	+		ABZR87_RS11130	0.71	-1.0
2,362,890	-		ABZR87_RS11130	0.71	-1.8
2,362,890	-		ABZR87_RS11130	0.71	-1.3
2,362,890	-		ABZR87_RS11130	0.71	-0.2
2,362,890	-		ABZR87_RS11130	0.71	-0.1
2,362,890	-		ABZR87_RS11130	0.71	-0.3
2,362,890	-		ABZR87_RS11130	0.71	-0.2
2,362,891	+		ABZR87_RS11130	0.71	-0.2
2,362,891	+		ABZR87_RS11130	0.71	-1.0
2,362,891	+		ABZR87_RS11130	0.71	-1.2
2,362,981	+		ABZR87_RS11130	0.82	-1.8
2,362,981	+		ABZR87_RS11130	0.82	+1.3
2,362,981	+		ABZR87_RS11130	0.82	+0.6
2,362,982	-		ABZR87_RS11130	0.82	-1.7
2,362,982	-		ABZR87_RS11130	0.82	-0.8
2,362,982	-		ABZR87_RS11130	0.82	-0.4
2,362,985	+		ABZR87_RS11130	0.82	-0.5
2,362,985	+		ABZR87_RS11130	0.82	-0.2
2,362,985	+		ABZR87_RS11130	0.82	-2.0
2,362,985	+		ABZR87_RS11130	0.82	+0.1
2,362,985	+		ABZR87_RS11130	0.82	+0.2
2,362,985	+		ABZR87_RS11130	0.82	+0.5
2,362,985	+		ABZR87_RS11130	0.82	-1.8
2,362,985	+		ABZR87_RS11130	0.82	-1.3
2,362,985	+		ABZR87_RS11130	0.82	+1.6
2,362,985	+		ABZR87_RS11130	0.82	-0.3
2,362,985	+		ABZR87_RS11130	0.82	+0.6
2,362,985	+		ABZR87_RS11130	0.82	-0.3
2,362,985	+		ABZR87_RS11130	0.82	+0.7
2,362,985	+		ABZR87_RS11130	0.82	-0.9
2,362,985	+		ABZR87_RS11130	0.82	-0.7
2,362,985	+		ABZR87_RS11130	0.82	-0.9
2,362,986	-		ABZR87_RS11130	0.82	-0.5
2,362,986	-		ABZR87_RS11130	0.82	-0.8
2,362,986	-		ABZR87_RS11130	0.82	+0.2
2,362,986	-		ABZR87_RS11130	0.82	-0.9
2,362,986	-		ABZR87_RS11130	0.82	-2.2
2,362,986	-		ABZR87_RS11130	0.82	-0.5
2,362,986	-		ABZR87_RS11130	0.82	-0.5
2,362,986	-		ABZR87_RS11130	0.82	-0.8
2,362,986	-		ABZR87_RS11130	0.82	-1.3
2,362,986	-		ABZR87_RS11130	0.82	-0.0
2,362,986	-		ABZR87_RS11130	0.82	-0.8
2,362,986	-		ABZR87_RS11130	0.82	+0.0
2,362,986	-		ABZR87_RS11130	0.82	-0.2
2,363,113	+				-0.1
2,363,113	+				+0.2
2,363,113	+				-1.2
2,363,113	+				-1.0
2,363,114	-				-0.4
2,363,172	+				-0.2
2,363,172	+				-0.4
2,363,175	-				-0.0
2,363,175	-				+1.2
2,363,175	-				-0.3
2,363,175	-				+0.8
2,363,248	-				-0.4