Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10190

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
2,160,956	+		ABZR87_RS10180	0.67	+0.4
2,160,957	-		ABZR87_RS10180	0.67	-0.9
2,160,957	-		ABZR87_RS10180	0.67	-0.7
2,160,970	+		ABZR87_RS10180	0.68	-1.3
2,161,138	+		ABZR87_RS10180	0.79	-0.4
2,161,139	-		ABZR87_RS10180	0.79	+0.0
2,161,139	-		ABZR87_RS10180	0.79	+0.2
2,161,390	-				+0.2
2,161,390	-				-1.9
2,161,467	+				+0.6
2,161,467	+				+2.4
2,161,468	-				+0.4
2,161,468	-				-0.6
2,161,468	-				-0.7
2,161,468	-				+0.1
2,161,486	+		ABZR87_RS10185	0.11	+0.3
2,161,486	+		ABZR87_RS10185	0.11	+1.0
2,161,486	+		ABZR87_RS10185	0.11	-0.1
2,161,487	-		ABZR87_RS10185	0.11	-0.6
2,161,487	-		ABZR87_RS10185	0.11	+1.1
2,161,487	-		ABZR87_RS10185	0.11	+0.0
2,161,487	-		ABZR87_RS10185	0.11	-0.9
2,161,607	+		ABZR87_RS10185	0.55	+0.4
2,161,607	+		ABZR87_RS10185	0.55	-1.0
2,161,607	+		ABZR87_RS10185	0.55	-0.8
2,161,607	+		ABZR87_RS10185	0.55	+0.6
2,161,608	-		ABZR87_RS10185	0.55	+0.4
2,161,608	-		ABZR87_RS10185	0.55	+0.4
2,161,608	-		ABZR87_RS10185	0.55	-0.3
2,161,673	-		ABZR87_RS10185	0.79	+0.2
2,161,685	+		ABZR87_RS10185	0.83	+0.3
2,161,685	+		ABZR87_RS10185	0.83	-1.0
2,161,795	+				+0.7
2,161,852	+				-0.6
2,161,852	+				-0.3
2,161,852	+				-0.3
2,161,852	+				+0.3
2,161,956	+				-1.0
2,161,956	+				-0.5
2,161,962	+				-0.3
2,162,134	+		ABZR87_RS10190	0.10	+0.6
2,162,134	+		ABZR87_RS10190	0.10	-1.5
2,162,134	+		ABZR87_RS10190	0.10	-0.1
2,162,135	-		ABZR87_RS10190	0.10	-1.5
2,162,135	-		ABZR87_RS10190	0.10	-1.9
2,162,136	+		ABZR87_RS10190	0.10	-1.9
2,162,136	+		ABZR87_RS10190	0.10	-1.5
2,162,136	+		ABZR87_RS10190	0.10	-2.7
2,162,136	+		ABZR87_RS10190	0.10	-0.8
2,162,137	-		ABZR87_RS10190	0.10	-1.0
2,162,137	-		ABZR87_RS10190	0.10	-0.9
2,162,158	+		ABZR87_RS10190	0.12	-1.3
2,162,158	+		ABZR87_RS10190	0.12	-1.2
2,162,159	-		ABZR87_RS10190	0.12	+1.0
2,162,203	+		ABZR87_RS10190	0.14	-0.4
2,162,203	+		ABZR87_RS10190	0.14	+0.5
2,162,204	-		ABZR87_RS10190	0.14	-0.0
2,162,297	-		ABZR87_RS10190	0.19	-0.0
2,162,554	+		ABZR87_RS10190	0.34	-0.8
2,162,554	+		ABZR87_RS10190	0.34	+1.0
2,162,555	-		ABZR87_RS10190	0.34	-0.2
2,162,555	-		ABZR87_RS10190	0.34	-0.3
2,162,555	-		ABZR87_RS10190	0.34	+0.4
2,162,555	-		ABZR87_RS10190	0.34	-1.5
2,162,869	+		ABZR87_RS10190	0.51	-0.0
2,162,870	-		ABZR87_RS10190	0.51	-0.2
2,162,927	-		ABZR87_RS10190	0.54	-0.3
2,163,042	+		ABZR87_RS10190	0.61	-1.7
2,163,043	-		ABZR87_RS10190	0.61	-1.0
2,163,065	-		ABZR87_RS10190	0.62	+0.7
2,163,065	-		ABZR87_RS10190	0.62	-1.0
2,163,178	+		ABZR87_RS10190	0.68	-0.7
2,163,178	+		ABZR87_RS10190	0.68	-0.5
2,163,178	+		ABZR87_RS10190	0.68	-0.3
2,163,178	+		ABZR87_RS10190	0.68	-1.2
2,163,178	+		ABZR87_RS10190	0.68	+0.4
2,163,179	-		ABZR87_RS10190	0.68	-1.2
2,163,179	-		ABZR87_RS10190	0.68	+0.4
2,163,253	+		ABZR87_RS10190	0.72	+2.8
2,163,253	+		ABZR87_RS10190	0.72	+0.6
2,163,253	+		ABZR87_RS10190	0.72	-0.8
2,163,281	-		ABZR87_RS10190	0.74	+0.4
2,163,346	+		ABZR87_RS10190	0.78	-0.2
2,163,358	+		ABZR87_RS10190	0.78	+1.4
2,163,361	+		ABZR87_RS10190	0.79	-0.5
2,163,470	-		ABZR87_RS10190	0.85	+0.4
2,163,523	+		ABZR87_RS10190	0.88	+0.2
2,163,523	+		ABZR87_RS10190	0.88	-0.5
2,163,625	-				-1.3
2,163,625	-				+0.8
2,163,925	+		ABZR87_RS10195	0.16	+1.2
2,164,003	+		ABZR87_RS10195	0.25	-0.0
2,164,141	+		ABZR87_RS10195	0.41	+2.0
2,164,330	+		ABZR87_RS10195	0.62	-0.3
2,164,444	+		ABZR87_RS10195	0.74	+0.8
2,164,490	-		ABZR87_RS10195	0.80	-0.8
2,164,531	+		ABZR87_RS10195	0.84	+1.0