Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10165

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
2,156,817	+				+0.6
2,156,830	+				+1.3
2,156,830	+				-1.8
2,156,830	+				-0.2
2,156,831	-				-1.2
2,156,831	-				-1.2
2,156,831	-				+0.4
2,156,955	+		ABZR87_RS10160	0.41	-1.2
2,156,956	-		ABZR87_RS10160	0.41	+0.0
2,157,034	+		ABZR87_RS10160	0.79	+0.2
2,157,034	+		ABZR87_RS10160	0.79	-0.3
2,157,034	+		ABZR87_RS10160	0.79	+0.1
2,157,034	+		ABZR87_RS10160	0.79	-1.0
2,157,035	-		ABZR87_RS10160	0.79	+1.5
2,157,174	+				-0.4
2,157,174	+				-0.3
2,157,175	-				+1.6
2,157,175	-				+1.5
2,157,175	-				+1.2
2,157,175	-				+1.9
2,157,282	+				-0.6
2,157,282	+				-0.6
2,157,283	-				+2.1
2,157,283	-				+1.3
2,157,283	-				+2.0
2,157,289	+				-0.2
2,157,290	-				+2.4
2,157,290	-				+1.6
2,157,290	-				+2.4
2,157,290	-				+1.3
2,157,290	-				+1.7
2,157,350	+				+0.8
2,157,351	-				+1.3
2,157,351	-				+1.4
2,157,359	+				-1.5
2,157,359	+				-1.5
2,157,360	-				+1.9
2,157,360	-				+1.6
2,157,393	+				+2.4
2,157,467	+				+3.1
2,157,467	+				+2.5
2,157,498	+		ABZR87_RS10165	0.14	+2.4
2,157,498	+		ABZR87_RS10165	0.14	+2.7
2,157,498	+		ABZR87_RS10165	0.14	+2.7
2,157,498	+		ABZR87_RS10165	0.14	+3.2
2,157,499	-		ABZR87_RS10165	0.14	+2.3
2,157,578	+		ABZR87_RS10165	0.27	+2.3
2,157,578	+		ABZR87_RS10165	0.27	+2.9
2,157,579	-		ABZR87_RS10165	0.28	+2.6
2,157,579	-		ABZR87_RS10165	0.28	+3.2
2,157,579	-		ABZR87_RS10165	0.28	+2.1
2,157,579	-		ABZR87_RS10165	0.28	+2.8
2,157,598	+		ABZR87_RS10165	0.31	+2.5
2,157,627	+		ABZR87_RS10165	0.35	+2.5
2,157,628	-		ABZR87_RS10165	0.36	+2.5
2,157,628	-		ABZR87_RS10165	0.36	+3.2
2,157,628	-		ABZR87_RS10165	0.36	+3.1
2,157,628	-		ABZR87_RS10165	0.36	+2.4
2,157,628	-		ABZR87_RS10165	0.36	+2.7
2,157,628	-		ABZR87_RS10165	0.36	+1.3
2,157,629	+		ABZR87_RS10165	0.36	+2.6
2,157,629	+		ABZR87_RS10165	0.36	+2.3
2,157,629	+		ABZR87_RS10165	0.36	+2.3
2,157,629	+		ABZR87_RS10165	0.36	+3.3
2,157,629	+		ABZR87_RS10165	0.36	+2.2
2,157,629	+		ABZR87_RS10165	0.36	+2.1
2,157,629	+		ABZR87_RS10165	0.36	+2.4
2,157,630	-		ABZR87_RS10165	0.36	+2.7
2,157,630	-		ABZR87_RS10165	0.36	+2.0
2,157,630	-		ABZR87_RS10165	0.36	+3.0
2,157,630	-		ABZR87_RS10165	0.36	+2.9
2,157,630	-		ABZR87_RS10165	0.36	+2.5
2,157,640	-		ABZR87_RS10165	0.38	+2.3
2,157,656	+		ABZR87_RS10165	0.40	+2.2
2,157,657	-		ABZR87_RS10165	0.41	+2.3
2,157,669	+		ABZR87_RS10165	0.42	+2.4
2,157,669	+		ABZR87_RS10165	0.42	+2.2
2,157,751	+		ABZR87_RS10165	0.56	+3.1
2,157,751	+		ABZR87_RS10165	0.56	+2.7
2,157,751	+		ABZR87_RS10165	0.56	+2.5
2,157,751	+		ABZR87_RS10165	0.56	+2.6
2,157,752	-		ABZR87_RS10165	0.56	+2.8
2,157,754	+		ABZR87_RS10165	0.57	+2.3
2,157,754	+		ABZR87_RS10165	0.57	+2.3
2,157,767	+		ABZR87_RS10165	0.59	+2.8
2,157,767	+		ABZR87_RS10165	0.59	+2.6
2,157,768	-		ABZR87_RS10165	0.59	+2.2
2,157,768	-		ABZR87_RS10165	0.59	+2.8
2,157,768	-		ABZR87_RS10165	0.59	+3.0
2,157,885	+		ABZR87_RS10165	0.79	+3.0
2,157,885	+		ABZR87_RS10165	0.79	+2.3
2,157,885	+		ABZR87_RS10165	0.79	+2.5
2,157,885	+		ABZR87_RS10165	0.79	+2.5
2,157,886	-		ABZR87_RS10165	0.79	+2.8
2,157,886	-		ABZR87_RS10165	0.79	+2.6
2,157,886	-		ABZR87_RS10165	0.79	+2.4
2,157,886	-		ABZR87_RS10165	0.79	+2.6
2,158,309	+		ABZR87_RS10170	0.30	-1.9
2,158,309	+		ABZR87_RS10170	0.30	-1.1
2,158,309	+		ABZR87_RS10170	0.30	+0.4
2,158,310	-		ABZR87_RS10170	0.30	-1.3
2,158,310	-		ABZR87_RS10170	0.30	-0.3
2,158,310	-		ABZR87_RS10170	0.30	-0.6
2,158,492	+		ABZR87_RS10170	0.59	+0.8
2,158,493	-		ABZR87_RS10170	0.59	-0.3
2,158,650	-		ABZR87_RS10170	0.84	-1.9
2,158,650	-		ABZR87_RS10170	0.84	+0.8
2,158,684	+		ABZR87_RS10170	0.89	-1.0
2,158,684	+		ABZR87_RS10170	0.89	-0.3
2,158,685	-		ABZR87_RS10170	0.89	-0.2
2,158,698	-				-0.9
2,158,752	-				-1.0
2,158,954	+		ABZR87_RS10175	0.17	-1.3
2,158,954	+		ABZR87_RS10175	0.17	-2.6
2,158,955	-		ABZR87_RS10175	0.17	-2.3
2,158,955	-		ABZR87_RS10175	0.17	-0.6
2,158,972	+		ABZR87_RS10175	0.19	+0.4
2,158,972	+		ABZR87_RS10175	0.19	+0.8
2,158,973	-		ABZR87_RS10175	0.19	+1.1