Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09315

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09310 and ABZR87_RS09315 are separated by 7 nucleotidesABZR87_RS09315 and ABZR87_RS09320 are separated by 10 nucleotides ABZR87_RS09310: ABZR87_RS09310 - TonB-dependent siderophore receptor, at 1,972,315 to 1,974,423 _RS09310 ABZR87_RS09315: ABZR87_RS09315 - slipin family protein, at 1,974,431 to 1,975,189 _RS09315 ABZR87_RS09320: ABZR87_RS09320 - nodulation protein NfeD, at 1,975,200 to 1,976,579 _RS09320 Position (kb) 1974 1975 1976Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1973.492 kb on - strand, within ABZR87_RS09310at 1973.524 kb on + strand, within ABZR87_RS09310at 1973.524 kb on + strand, within ABZR87_RS09310at 1973.524 kb on + strand, within ABZR87_RS09310at 1973.524 kb on + strand, within ABZR87_RS09310at 1973.525 kb on - strand, within ABZR87_RS09310at 1973.525 kb on - strand, within ABZR87_RS09310at 1973.605 kb on + strand, within ABZR87_RS09310at 1973.606 kb on - strand, within ABZR87_RS09310at 1973.663 kb on - strand, within ABZR87_RS09310at 1973.663 kb on - strand, within ABZR87_RS09310at 1973.671 kb on + strand, within ABZR87_RS09310at 1973.671 kb on + strand, within ABZR87_RS09310at 1973.671 kb on + strand, within ABZR87_RS09310at 1973.671 kb on + strand, within ABZR87_RS09310at 1973.737 kb on + strand, within ABZR87_RS09310at 1973.738 kb on - strand, within ABZR87_RS09310at 1973.738 kb on - strand, within ABZR87_RS09310at 1973.738 kb on - strand, within ABZR87_RS09310at 1973.764 kb on + strand, within ABZR87_RS09310at 1973.764 kb on + strand, within ABZR87_RS09310at 1973.764 kb on + strand, within ABZR87_RS09310at 1973.765 kb on - strand, within ABZR87_RS09310at 1973.765 kb on - strand, within ABZR87_RS09310at 1973.773 kb on + strand, within ABZR87_RS09310at 1973.774 kb on - strand, within ABZR87_RS09310at 1973.879 kb on - strand, within ABZR87_RS09310at 1973.879 kb on - strand, within ABZR87_RS09310at 1973.879 kb on - strand, within ABZR87_RS09310at 1973.917 kb on + strand, within ABZR87_RS09310at 1973.918 kb on - strand, within ABZR87_RS09310at 1973.942 kb on - strand, within ABZR87_RS09310at 1974.148 kb on + strand, within ABZR87_RS09310at 1974.148 kb on + strand, within ABZR87_RS09310at 1974.148 kb on + strand, within ABZR87_RS09310at 1974.148 kb on + strand, within ABZR87_RS09310at 1974.149 kb on - strand, within ABZR87_RS09310at 1974.149 kb on - strand, within ABZR87_RS09310at 1974.149 kb on - strand, within ABZR87_RS09310at 1974.149 kb on - strand, within ABZR87_RS09310at 1974.193 kb on + strand, within ABZR87_RS09310at 1974.194 kb on - strand, within ABZR87_RS09310at 1974.194 kb on - strand, within ABZR87_RS09310at 1974.194 kb on - strand, within ABZR87_RS09310at 1974.194 kb on - strand, within ABZR87_RS09310at 1974.194 kb on - strand, within ABZR87_RS09310at 1974.196 kb on + strand, within ABZR87_RS09310at 1974.197 kb on - strand, within ABZR87_RS09310at 1974.197 kb on - strand, within ABZR87_RS09310at 1974.197 kb on - strand, within ABZR87_RS09310at 1974.197 kb on - strand, within ABZR87_RS09310at 1974.275 kb on - strandat 1974.275 kb on - strandat 1974.464 kb on + strandat 1974.464 kb on + strandat 1974.465 kb on - strandat 1974.465 kb on - strandat 1974.465 kb on - strandat 1974.534 kb on + strand, within ABZR87_RS09315at 1974.588 kb on - strand, within ABZR87_RS09315at 1974.921 kb on + strand, within ABZR87_RS09315at 1974.922 kb on - strand, within ABZR87_RS09315at 1974.947 kb on + strand, within ABZR87_RS09315at 1974.947 kb on + strand, within ABZR87_RS09315at 1974.947 kb on + strand, within ABZR87_RS09315at 1974.948 kb on - strand, within ABZR87_RS09315at 1974.948 kb on - strand, within ABZR87_RS09315at 1974.948 kb on - strand, within ABZR87_RS09315at 1974.948 kb on - strand, within ABZR87_RS09315at 1975.007 kb on + strand, within ABZR87_RS09315at 1975.007 kb on + strand, within ABZR87_RS09315at 1975.007 kb on + strand, within ABZR87_RS09315at 1975.008 kb on - strand, within ABZR87_RS09315at 1975.008 kb on - strand, within ABZR87_RS09315at 1975.104 kb on + strand, within ABZR87_RS09315at 1975.182 kb on + strandat 1975.182 kb on + strandat 1975.183 kb on - strandat 1975.524 kb on - strand, within ABZR87_RS09320at 1975.651 kb on + strand, within ABZR87_RS09320at 1975.652 kb on - strand, within ABZR87_RS09320at 1975.652 kb on - strand, within ABZR87_RS09320at 1975.652 kb on - strand, within ABZR87_RS09320at 1975.679 kb on - strand, within ABZR87_RS09320at 1975.760 kb on - strand, within ABZR87_RS09320at 1975.760 kb on - strand, within ABZR87_RS09320at 1976.062 kb on + strand, within ABZR87_RS09320at 1976.062 kb on + strand, within ABZR87_RS09320at 1976.062 kb on + strand, within ABZR87_RS09320at 1976.062 kb on + strand, within ABZR87_RS09320at 1976.062 kb on + strand, within ABZR87_RS09320at 1976.063 kb on - strand, within ABZR87_RS09320at 1976.063 kb on - strand, within ABZR87_RS09320at 1976.063 kb on - strand, within ABZR87_RS09320at 1976.063 kb on - strand, within ABZR87_RS09320at 1976.063 kb on - strand, within ABZR87_RS09320

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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1,973,492 - ABZR87_RS09310 0.56 +0.3
1,973,524 + ABZR87_RS09310 0.57 -1.3
1,973,524 + ABZR87_RS09310 0.57 -2.0
1,973,524 + ABZR87_RS09310 0.57 -0.2
1,973,524 + ABZR87_RS09310 0.57 -1.4
1,973,525 - ABZR87_RS09310 0.57 +0.1
1,973,525 - ABZR87_RS09310 0.57 -0.3
1,973,605 + ABZR87_RS09310 0.61 -0.1
1,973,606 - ABZR87_RS09310 0.61 -2.8
1,973,663 - ABZR87_RS09310 0.64 -0.6
1,973,663 - ABZR87_RS09310 0.64 +0.9
1,973,671 + ABZR87_RS09310 0.64 +1.4
1,973,671 + ABZR87_RS09310 0.64 +0.2
1,973,671 + ABZR87_RS09310 0.64 -0.4
1,973,671 + ABZR87_RS09310 0.64 -0.1
1,973,737 + ABZR87_RS09310 0.67 +0.1
1,973,738 - ABZR87_RS09310 0.67 -1.3
1,973,738 - ABZR87_RS09310 0.67 +0.4
1,973,738 - ABZR87_RS09310 0.67 +0.7
1,973,764 + ABZR87_RS09310 0.69 -0.5
1,973,764 + ABZR87_RS09310 0.69 -1.0
1,973,764 + ABZR87_RS09310 0.69 -1.0
1,973,765 - ABZR87_RS09310 0.69 -0.3
1,973,765 - ABZR87_RS09310 0.69 -0.3
1,973,773 + ABZR87_RS09310 0.69 +0.1
1,973,774 - ABZR87_RS09310 0.69 -2.0
1,973,879 - ABZR87_RS09310 0.74 -0.0
1,973,879 - ABZR87_RS09310 0.74 +0.3
1,973,879 - ABZR87_RS09310 0.74 -0.1
1,973,917 + ABZR87_RS09310 0.76 -0.0
1,973,918 - ABZR87_RS09310 0.76 -1.5
1,973,942 - ABZR87_RS09310 0.77 +0.2
1,974,148 + ABZR87_RS09310 0.87 +0.4
1,974,148 + ABZR87_RS09310 0.87 -0.9
1,974,148 + ABZR87_RS09310 0.87 +0.2
1,974,148 + ABZR87_RS09310 0.87 +0.7
1,974,149 - ABZR87_RS09310 0.87 +0.2
1,974,149 - ABZR87_RS09310 0.87 -0.7
1,974,149 - ABZR87_RS09310 0.87 +0.4
1,974,149 - ABZR87_RS09310 0.87 -0.7
1,974,193 + ABZR87_RS09310 0.89 -1.4
1,974,194 - ABZR87_RS09310 0.89 +0.1
1,974,194 - ABZR87_RS09310 0.89 +0.6
1,974,194 - ABZR87_RS09310 0.89 +1.2
1,974,194 - ABZR87_RS09310 0.89 +1.2
1,974,194 - ABZR87_RS09310 0.89 +1.7
1,974,196 + ABZR87_RS09310 0.89 -0.4
1,974,197 - ABZR87_RS09310 0.89 +0.5
1,974,197 - ABZR87_RS09310 0.89 +0.2
1,974,197 - ABZR87_RS09310 0.89 -0.7
1,974,197 - ABZR87_RS09310 0.89 -0.4
1,974,275 - -1.3
1,974,275 - -0.7
1,974,464 + -0.3
1,974,464 + -0.2
1,974,465 - -0.8
1,974,465 - -0.0
1,974,465 - -0.5
1,974,534 + ABZR87_RS09315 0.14 -2.3
1,974,588 - ABZR87_RS09315 0.21 -0.1
1,974,921 + ABZR87_RS09315 0.65 -1.0
1,974,922 - ABZR87_RS09315 0.65 +0.6
1,974,947 + ABZR87_RS09315 0.68 -0.4
1,974,947 + ABZR87_RS09315 0.68 -0.1
1,974,947 + ABZR87_RS09315 0.68 -0.6
1,974,948 - ABZR87_RS09315 0.68 -0.4
1,974,948 - ABZR87_RS09315 0.68 -1.8
1,974,948 - ABZR87_RS09315 0.68 +0.0
1,974,948 - ABZR87_RS09315 0.68 +1.9
1,975,007 + ABZR87_RS09315 0.76 -0.5
1,975,007 + ABZR87_RS09315 0.76 -0.9
1,975,007 + ABZR87_RS09315 0.76 +0.4
1,975,008 - ABZR87_RS09315 0.76 +0.8
1,975,008 - ABZR87_RS09315 0.76 +1.2
1,975,104 + ABZR87_RS09315 0.89 -1.5
1,975,182 + -0.9
1,975,182 + +0.0
1,975,183 - +0.6
1,975,524 - ABZR87_RS09320 0.23 -0.2
1,975,651 + ABZR87_RS09320 0.33 +0.2
1,975,652 - ABZR87_RS09320 0.33 -1.0
1,975,652 - ABZR87_RS09320 0.33 -2.0
1,975,652 - ABZR87_RS09320 0.33 -0.5
1,975,679 - ABZR87_RS09320 0.35 -0.4
1,975,760 - ABZR87_RS09320 0.41 -0.0
1,975,760 - ABZR87_RS09320 0.41 +0.1
1,976,062 + ABZR87_RS09320 0.62 -0.9
1,976,062 + ABZR87_RS09320 0.62 +0.4
1,976,062 + ABZR87_RS09320 0.62 -0.1
1,976,062 + ABZR87_RS09320 0.62 -0.1
1,976,062 + ABZR87_RS09320 0.62 -0.7
1,976,063 - ABZR87_RS09320 0.63 -1.1
1,976,063 - ABZR87_RS09320 0.63 -0.4
1,976,063 - ABZR87_RS09320 0.63 -1.2
1,976,063 - ABZR87_RS09320 0.63 -0.6
1,976,063 - ABZR87_RS09320 0.63 -0.6

Or see this region's nucleotide sequence