Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08435

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
1,790,075	+		ABZR87_RS08425	0.62	+0.5
1,790,076	-		ABZR87_RS08425	0.62	-0.2
1,790,151	+		ABZR87_RS08425	0.78	+0.6
1,790,151	+		ABZR87_RS08425	0.78	-0.9
1,790,151	+		ABZR87_RS08425	0.78	+0.0
1,790,152	-		ABZR87_RS08425	0.79	+0.7
1,790,152	-		ABZR87_RS08425	0.79	-0.4
1,790,152	-		ABZR87_RS08425	0.79	+0.6
1,790,191	+		ABZR87_RS08425	0.87	-0.1
1,790,191	+		ABZR87_RS08425	0.87	-0.0
1,790,191	+		ABZR87_RS08425	0.87	-0.1
1,790,191	+		ABZR87_RS08425	0.87	-0.2
1,790,191	+		ABZR87_RS08425	0.87	-2.8
1,790,191	+		ABZR87_RS08425	0.87	-1.7
1,790,191	+		ABZR87_RS08425	0.87	+0.4
1,790,192	-		ABZR87_RS08425	0.87	-1.4
1,790,192	-		ABZR87_RS08425	0.87	-0.2
1,790,192	-		ABZR87_RS08425	0.87	-0.2
1,790,194	+		ABZR87_RS08425	0.88	+0.0
1,790,194	+		ABZR87_RS08425	0.88	+0.9
1,790,194	+		ABZR87_RS08425	0.88	-1.2
1,790,194	+		ABZR87_RS08425	0.88	+0.6
1,790,195	-		ABZR87_RS08425	0.88	+0.1
1,790,209	+				+0.9
1,790,262	+				+0.7
1,790,263	-				-0.3
1,790,263	-				-0.3
1,790,326	+				-0.4
1,790,326	+				+0.2
1,790,326	+				+1.0
1,790,327	-				-0.1
1,790,327	-				+0.2
1,790,327	-				-0.5
1,790,606	+		ABZR87_RS08430	0.47	+0.3
1,790,608	+		ABZR87_RS08430	0.47	-0.5
1,790,681	-		ABZR87_RS08430	0.57	+0.6
1,790,809	+		ABZR87_RS08430	0.75	-1.6
1,790,809	+		ABZR87_RS08430	0.75	-0.9
1,790,809	+		ABZR87_RS08430	0.75	+0.4
1,790,809	+		ABZR87_RS08430	0.75	-0.4
1,790,810	-		ABZR87_RS08430	0.75	-0.6
1,790,810	-		ABZR87_RS08430	0.75	+1.6
1,790,810	-		ABZR87_RS08430	0.75	+0.2
1,790,810	-		ABZR87_RS08430	0.75	+0.0
1,790,810	-		ABZR87_RS08430	0.75	+0.1
1,790,810	-		ABZR87_RS08430	0.75	-0.3
1,790,810	-		ABZR87_RS08430	0.75	-0.4
1,790,810	-		ABZR87_RS08430	0.75	-0.3
1,790,842	+		ABZR87_RS08430	0.79	-0.7
1,790,842	+		ABZR87_RS08430	0.79	+0.1
1,790,843	-		ABZR87_RS08430	0.79	+0.2
1,790,843	-		ABZR87_RS08430	0.79	-0.2
1,790,843	-		ABZR87_RS08430	0.79	-0.4
1,790,848	+		ABZR87_RS08430	0.80	+0.4
1,790,848	+		ABZR87_RS08430	0.80	+0.9
1,790,848	+		ABZR87_RS08430	0.80	+0.8
1,790,849	-		ABZR87_RS08430	0.80	+0.5
1,790,849	-		ABZR87_RS08430	0.80	-0.1
1,790,849	-		ABZR87_RS08430	0.80	-1.1
1,790,873	-		ABZR87_RS08430	0.84	+0.4
1,791,045	+				+0.0
1,791,045	+				-0.3
1,791,045	+				+0.5
1,791,046	-				+0.4
1,791,046	-				-3.0
1,791,046	-				-0.2
1,791,046	-				-0.7
1,791,046	-				-0.1
1,791,046	-				+0.3
1,791,225	-		ABZR87_RS08435	0.17	-0.4
1,791,225	-		ABZR87_RS08435	0.17	-0.0
1,791,225	-		ABZR87_RS08435	0.17	+1.0
1,791,239	+		ABZR87_RS08435	0.18	-0.4
1,791,239	+		ABZR87_RS08435	0.18	-0.4
1,791,240	-		ABZR87_RS08435	0.18	+0.0
1,791,240	-		ABZR87_RS08435	0.18	+0.1
1,791,258	-		ABZR87_RS08435	0.20	+0.2
1,791,402	-		ABZR87_RS08435	0.34	-0.9
1,791,419	+		ABZR87_RS08435	0.35	-0.9
1,791,419	+		ABZR87_RS08435	0.35	+0.8
1,791,434	+		ABZR87_RS08435	0.37	-1.0
1,791,434	+		ABZR87_RS08435	0.37	+0.0
1,791,435	-		ABZR87_RS08435	0.37	-0.1
1,791,460	+		ABZR87_RS08435	0.39	+0.7
1,791,460	+		ABZR87_RS08435	0.39	+0.0
1,791,460	+		ABZR87_RS08435	0.39	+0.1
1,791,461	-		ABZR87_RS08435	0.39	+0.3
1,791,461	-		ABZR87_RS08435	0.39	-0.4
1,791,461	-		ABZR87_RS08435	0.39	-0.4
1,791,461	-		ABZR87_RS08435	0.39	+0.4
1,791,479	+		ABZR87_RS08435	0.41	+0.5
1,791,479	+		ABZR87_RS08435	0.41	+0.5
1,791,480	-		ABZR87_RS08435	0.41	-0.2
1,791,480	-		ABZR87_RS08435	0.41	+0.4
1,791,480	-		ABZR87_RS08435	0.41	+0.2
1,791,480	-		ABZR87_RS08435	0.41	-0.5
1,791,532	-		ABZR87_RS08435	0.46	-0.6
1,791,623	+		ABZR87_RS08435	0.55	+0.7
1,791,623	+		ABZR87_RS08435	0.55	-0.5
1,791,623	+		ABZR87_RS08435	0.55	-0.7
1,791,624	-		ABZR87_RS08435	0.55	-0.8
1,791,624	-		ABZR87_RS08435	0.55	+0.1
1,791,681	+		ABZR87_RS08435	0.60	-0.1
1,791,682	-		ABZR87_RS08435	0.60	-0.5
1,791,682	-		ABZR87_RS08435	0.60	+0.5
1,791,682	-		ABZR87_RS08435	0.60	+0.2
1,791,682	-		ABZR87_RS08435	0.60	-0.7
1,791,965	+		ABZR87_RS08435	0.87	-0.8
1,791,974	+		ABZR87_RS08435	0.88	-0.4
1,791,995	-		ABZR87_RS08435	0.90	+0.3
1,791,995	-		ABZR87_RS08435	0.90	-0.2
1,792,025	+				-0.4
1,792,025	+				-0.0
1,792,025	+				+0.1
1,792,026	-				-0.2
1,792,036	+				-0.0
1,792,036	+				-0.1
1,792,037	-				-0.1
1,792,037	-				-0.8
1,792,037	-				+0.2
1,792,148	+				-1.2
1,792,148	+				-0.1
1,792,149	-				+1.5
1,792,179	+				-1.1
1,792,180	-				+0.3
1,792,251	+		ABZR87_RS08440	0.20	-0.8
1,792,467	+		ABZR87_RS08440	0.61	-1.2
1,792,468	-		ABZR87_RS08440	0.61	-0.3
1,792,477	+		ABZR87_RS08440	0.63	-0.0
1,792,616	-				-1.4
1,792,679	+				+0.1
1,792,679	+				-0.8
1,792,680	-				-0.2
1,792,712	-				-0.2
1,792,734	+				+0.7
1,792,734	+				+0.6
1,792,735	-				-1.3
1,792,735	-				+0.1
1,792,735	-				-0.7
1,792,738	+				-2.9
1,792,738	+				-1.0
1,792,738	+				+0.4
1,792,739	-				-0.9
1,792,739	-				+0.5
1,792,765	+				-0.4
1,792,765	+				+0.3
1,792,765	+				-0.8
1,792,765	+				-0.2
1,792,765	+				+1.0
1,792,766	-				-1.9
1,792,766	-				-0.3
1,792,766	-				+1.6
1,792,766	-				-0.1
1,792,766	-				+0.3
1,792,766	-				-0.5
1,792,766	-				+0.1
1,792,767	+				-0.4
1,792,767	+				+0.2
1,792,767	+				-0.5
1,792,767	+				-0.5
1,792,768	-				-0.0
1,792,768	-				+0.1
1,792,811	-				-0.9
1,792,829	-				+0.4
1,792,887	-				-0.6
1,792,887	-				-0.4
1,792,887	-				+0.3
1,792,950	+				+0.1
1,792,950	+				+0.2
1,792,950	+				+0.1
1,792,950	+				-0.1
1,792,950	+				+0.1
1,792,950	+				+0.4
1,792,951	-				-0.2
1,792,988	+				+1.7
1,792,989	-				+0.1
1,792,989	-				+0.5
1,793,008	+				+0.5
1,793,008	+				-0.1
1,793,009	-				-1.8
1,793,048	-				+0.3
1,793,048	-				+0.6
1,793,067	+				+0.1
1,793,067	+				-0.8
1,793,067	+				-0.1
1,793,067	+				+0.1
1,793,067	+				+0.1
1,793,067	+				+0.1
1,793,067	+				+0.1
1,793,067	+				+1.1
1,793,067	+				-0.4
1,793,068	-				+0.4
1,793,068	-				-1.1
1,793,068	-				-0.5
1,793,068	-				+1.5
1,793,068	-				+0.2
1,793,068	-				+0.5
1,793,068	-				-0.7
1,793,068	-				-0.7
1,793,068	-				+0.5
1,793,068	-				-0.4
1,793,069	+				-1.0
1,793,069	+				-0.1
1,793,069	+				-0.0
1,793,069	+				-0.0
1,793,069	+				+0.1
1,793,069	+				+0.3
1,793,070	-				-0.2
1,793,070	-				-0.8
1,793,070	-				-1.7
1,793,070	-				+0.3
1,793,070	-				+1.0
1,793,070	-				-0.6
1,793,070	-				-1.5
1,793,070	-				+0.0
1,793,070	-				-0.2
1,793,070	-				-0.8
1,793,070	-				+0.7
1,793,070	-				+0.7
1,793,070	-				+0.6
1,793,070	-				+0.4
1,793,070	-				-0.5
1,793,070	-				+0.4
1,793,070	-				-0.8
1,793,070	-				+0.6
1,793,071	+				-0.4
1,793,071	+				-0.8
1,793,071	+				+1.5
1,793,072	-				+1.0
1,793,072	-				-0.2
1,793,072	-				-1.5
1,793,072	-				+0.8