Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07925

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
1,682,898	+		ABZR87_RS07915	0.22	+0.1
1,682,996	+		ABZR87_RS07915	0.32	-1.2
1,682,996	+		ABZR87_RS07915	0.32	-0.0
1,682,997	-		ABZR87_RS07915	0.32	-1.1
1,682,997	-		ABZR87_RS07915	0.32	+0.4
1,682,997	-		ABZR87_RS07915	0.32	+0.8
1,682,997	-		ABZR87_RS07915	0.32	+0.2
1,682,997	-		ABZR87_RS07915	0.32	-0.1
1,683,000	+		ABZR87_RS07915	0.33	-0.4
1,683,001	-		ABZR87_RS07915	0.33	+0.1
1,683,001	-		ABZR87_RS07915	0.33	+0.2
1,683,363	+		ABZR87_RS07915	0.71	-0.7
1,683,364	-		ABZR87_RS07915	0.71	-0.6
1,683,364	-		ABZR87_RS07915	0.71	+1.6
1,683,456	+		ABZR87_RS07915	0.80	-0.8
1,683,456	+		ABZR87_RS07915	0.80	+0.3
1,683,456	+		ABZR87_RS07915	0.80	-1.9
1,683,457	-		ABZR87_RS07915	0.80	+1.2
1,683,457	-		ABZR87_RS07915	0.80	+0.5
1,683,554	+				+0.7
1,683,554	+				+0.0
1,683,554	+				+0.1
1,683,554	+				+0.3
1,683,555	-				+1.1
1,683,555	-				+0.1
1,683,555	-				-1.4
1,683,555	-				+0.4
1,683,555	-				-0.2
1,683,642	+				+0.4
1,683,643	-				-0.3
1,683,717	-				-0.0
1,683,858	+				+0.4
1,683,859	-				-0.5
1,683,948	+				+0.8
1,683,948	+				+0.9
1,683,948	+				-0.2
1,683,948	+				-1.6
1,683,948	+				+0.5
1,683,948	+				-0.7
1,683,948	+				+0.8
1,683,948	+				-1.4
1,683,949	-				+0.0
1,683,949	-				-0.5
1,683,949	-				+1.2
1,683,950	+				+0.0
1,683,952	+				+0.5
1,683,952	+				+1.1
1,683,952	+				-0.4
1,683,952	+				-0.6
1,683,952	+				+0.0
1,683,952	+				-0.6
1,683,952	+				-1.0
1,684,026	+		ABZR87_RS07925	0.11	+0.0
1,684,027	-		ABZR87_RS07925	0.11	-0.3
1,684,047	+		ABZR87_RS07925	0.12	+0.7
1,684,113	+		ABZR87_RS07925	0.16	+0.1
1,684,113	+		ABZR87_RS07925	0.16	-0.7
1,684,113	+		ABZR87_RS07925	0.16	+0.3
1,684,113	+		ABZR87_RS07925	0.16	+0.0
1,684,114	-		ABZR87_RS07925	0.16	-1.2
1,684,114	-		ABZR87_RS07925	0.16	-0.3
1,684,114	-		ABZR87_RS07925	0.16	-0.8
1,684,114	-		ABZR87_RS07925	0.16	+0.1
1,684,186	-		ABZR87_RS07925	0.20	-0.7
1,684,359	+		ABZR87_RS07925	0.30	-0.4
1,684,359	+		ABZR87_RS07925	0.30	-0.1
1,684,359	+		ABZR87_RS07925	0.30	-0.4
1,684,360	-		ABZR87_RS07925	0.30	-0.2
1,684,384	+		ABZR87_RS07925	0.32	-1.2
1,684,384	+		ABZR87_RS07925	0.32	-0.4
1,684,521	+		ABZR87_RS07925	0.40	+1.3
1,684,551	+		ABZR87_RS07925	0.41	-1.2
1,684,552	-		ABZR87_RS07925	0.41	-1.0
1,684,552	-		ABZR87_RS07925	0.41	-0.3
1,684,552	-		ABZR87_RS07925	0.41	-0.2
1,684,552	-		ABZR87_RS07925	0.41	-1.7
1,684,726	-		ABZR87_RS07925	0.52	+0.1
1,684,741	-		ABZR87_RS07925	0.53	+0.8
1,684,741	-		ABZR87_RS07925	0.53	-1.0
1,684,902	+		ABZR87_RS07925	0.62	-0.2
1,684,902	+		ABZR87_RS07925	0.62	-1.4
1,684,902	+		ABZR87_RS07925	0.62	-0.4
1,684,902	+		ABZR87_RS07925	0.62	-0.4
1,684,902	+		ABZR87_RS07925	0.62	-0.8
1,684,903	-		ABZR87_RS07925	0.62	-0.3
1,684,903	-		ABZR87_RS07925	0.62	-0.3
1,684,903	-		ABZR87_RS07925	0.62	-2.4
1,685,055	+		ABZR87_RS07925	0.71	+0.3
1,685,055	+		ABZR87_RS07925	0.71	+0.3
1,685,056	-		ABZR87_RS07925	0.71	+0.4
1,685,056	-		ABZR87_RS07925	0.71	+0.1
1,685,094	+		ABZR87_RS07925	0.73	+0.3
1,685,094	+		ABZR87_RS07925	0.73	-0.6
1,685,094	+		ABZR87_RS07925	0.73	-1.3
1,685,094	+		ABZR87_RS07925	0.73	+0.1
1,685,094	+		ABZR87_RS07925	0.73	-3.2
1,685,095	-		ABZR87_RS07925	0.73	-2.2
1,685,095	-		ABZR87_RS07925	0.73	+0.3
1,685,095	-		ABZR87_RS07925	0.73	-0.1
1,685,095	-		ABZR87_RS07925	0.73	+0.6
1,685,095	-		ABZR87_RS07925	0.73	+0.7
1,685,095	-		ABZR87_RS07925	0.73	+0.3
1,685,190	+		ABZR87_RS07925	0.79	+0.4
1,685,190	+		ABZR87_RS07925	0.79	-0.1
1,685,191	-		ABZR87_RS07925	0.79	-0.8
1,685,191	-		ABZR87_RS07925	0.79	-0.1
1,685,191	-		ABZR87_RS07925	0.79	+0.2
1,685,191	-		ABZR87_RS07925	0.79	+1.0
1,685,224	+		ABZR87_RS07925	0.81	-1.0
1,685,224	+		ABZR87_RS07925	0.81	-2.6
1,685,224	+		ABZR87_RS07925	0.81	-0.5
1,685,224	+		ABZR87_RS07925	0.81	+0.7
1,685,224	+		ABZR87_RS07925	0.81	+0.3
1,685,256	+		ABZR87_RS07925	0.83	+0.0
1,685,256	+		ABZR87_RS07925	0.83	-0.4
1,685,256	+		ABZR87_RS07925	0.83	-0.1
1,685,256	+		ABZR87_RS07925	0.83	+1.1
1,685,256	+		ABZR87_RS07925	0.83	+0.6
1,685,415	+				-0.8
1,685,415	+				-0.0
1,685,416	-				+0.0
1,685,421	+				-1.0
1,685,422	-				-1.0
1,685,422	-				-0.9
1,685,422	-				+0.3
1,685,430	+				+1.4
1,685,569	+				+0.2
1,685,569	+				-0.3
1,685,570	-				+1.0
1,685,570	-				-1.0
1,685,651	+				-0.1
1,685,679	-				+1.0
1,685,939	+				+0.7
1,685,939	+				+0.1
1,685,939	+				-1.3
1,685,940	-				+0.3
1,685,940	-				-0.8
1,685,978	+				+0.7
1,685,978	+				+1.8
1,685,978	+				+0.7
1,686,002	+				+0.2
1,686,003	-				+0.8
1,686,003	-				+0.5
1,686,003	-				+0.1
1,686,003	-				-0.2
1,686,023	+				+0.5
1,686,087	+				-0.1
1,686,088	-				+0.4
1,686,113	+		ABZR87_RS07930	0.14	-0.3
1,686,114	-		ABZR87_RS07930	0.14	-0.4
1,686,179	+		ABZR87_RS07930	0.35	-0.0
1,686,180	-		ABZR87_RS07930	0.35	-0.4
1,686,180	-		ABZR87_RS07930	0.35	-1.4
1,686,180	-		ABZR87_RS07930	0.35	-0.7
1,686,183	-		ABZR87_RS07930	0.36	+0.4
1,686,189	-		ABZR87_RS07930	0.38	+0.8
1,686,189	-		ABZR87_RS07930	0.38	+1.8
1,686,211	+		ABZR87_RS07930	0.45	+0.2
1,686,211	+		ABZR87_RS07930	0.45	+0.4
1,686,272	-		ABZR87_RS07930	0.65	-2.2
1,686,311	+		ABZR87_RS07930	0.78	+0.9
1,686,311	+		ABZR87_RS07930	0.78	+0.1
1,686,311	+		ABZR87_RS07930	0.78	-3.2
1,686,311	+		ABZR87_RS07930	0.78	-1.0
1,686,311	+		ABZR87_RS07930	0.78	+0.6
1,686,312	-		ABZR87_RS07930	0.78	+0.1
1,686,312	-		ABZR87_RS07930	0.78	-0.0
1,686,312	-		ABZR87_RS07930	0.78	+0.4
1,686,312	-		ABZR87_RS07930	0.78	-1.0
1,686,335	+		ABZR87_RS07930	0.85	-0.2
1,686,335	+		ABZR87_RS07930	0.85	-1.1
1,686,336	-		ABZR87_RS07930	0.86	-1.2