Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05955

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
1,271,888	+				+0.8
1,271,889	-				-0.1
1,271,889	-				+1.0
1,271,889	-				-0.3
1,271,958	+				+1.1
1,271,958	+				+1.9
1,271,959	-				+0.8
1,271,959	-				-0.1
1,271,959	-				-0.8
1,271,998	-				+1.7
1,271,998	-				+1.0
1,272,010	+				-0.4
1,272,010	+				+0.1
1,272,010	+				-0.1
1,272,011	-				-2.6
1,272,011	-				+0.2
1,272,011	-				+1.4
1,272,169	+		ABZR87_RS05950	0.21	-0.1
1,272,170	-		ABZR87_RS05950	0.21	+0.0
1,272,190	+		ABZR87_RS05950	0.24	-0.3
1,272,190	+		ABZR87_RS05950	0.24	-0.1
1,272,190	+		ABZR87_RS05950	0.24	-0.3
1,272,190	+		ABZR87_RS05950	0.24	-0.6
1,272,191	-		ABZR87_RS05950	0.24	-0.4
1,272,191	-		ABZR87_RS05950	0.24	+0.1
1,272,191	-		ABZR87_RS05950	0.24	+0.1
1,272,191	-		ABZR87_RS05950	0.24	+0.2
1,272,191	-		ABZR87_RS05950	0.24	-0.3
1,272,338	-		ABZR87_RS05950	0.42	+0.4
1,272,338	-		ABZR87_RS05950	0.42	-0.1
1,272,338	-		ABZR87_RS05950	0.42	+0.1
1,272,418	+		ABZR87_RS05950	0.52	-0.1
1,272,418	+		ABZR87_RS05950	0.52	-0.5
1,272,418	+		ABZR87_RS05950	0.52	+0.2
1,272,418	+		ABZR87_RS05950	0.52	-0.3
1,272,418	+		ABZR87_RS05950	0.52	-0.1
1,272,418	+		ABZR87_RS05950	0.52	-0.1
1,272,418	+		ABZR87_RS05950	0.52	+0.9
1,272,419	-		ABZR87_RS05950	0.52	-0.0
1,272,419	-		ABZR87_RS05950	0.52	-1.8
1,272,419	-		ABZR87_RS05950	0.52	+0.6
1,272,484	+		ABZR87_RS05950	0.60	-0.2
1,272,485	-		ABZR87_RS05950	0.60	-0.1
1,272,485	-		ABZR87_RS05950	0.60	-0.9
1,272,485	-		ABZR87_RS05950	0.60	-0.2
1,272,490	+		ABZR87_RS05950	0.61	-0.0
1,272,490	+		ABZR87_RS05950	0.61	+0.6
1,272,490	+		ABZR87_RS05950	0.61	+0.7
1,272,490	+		ABZR87_RS05950	0.61	-1.1
1,272,490	-		ABZR87_RS05950	0.61	+0.2
1,272,491	-		ABZR87_RS05950	0.61	+0.8
1,272,491	-		ABZR87_RS05950	0.61	-0.3
1,272,491	-		ABZR87_RS05950	0.61	-0.6
1,272,491	-		ABZR87_RS05950	0.61	+0.2
1,272,491	-		ABZR87_RS05950	0.61	+0.6
1,272,491	-		ABZR87_RS05950	0.61	+1.1
1,272,491	-		ABZR87_RS05950	0.61	+0.5
1,272,652	+		ABZR87_RS05950	0.81	-0.4
1,272,652	+		ABZR87_RS05950	0.81	+0.0
1,272,653	-		ABZR87_RS05950	0.81	+0.1
1,272,798	+				-0.7
1,272,798	+				+0.9
1,272,799	-				+0.2
1,272,799	-				+0.4
1,272,875	+				+0.9
1,272,875	+				+0.2
1,272,878	+				-0.5
1,272,878	+				+0.3
1,272,878	+				-0.2
1,272,878	+				-0.4
1,272,879	-				+0.8
1,272,879	-				+0.1
1,273,171	+		ABZR87_RS05955	0.29	-0.2
1,273,172	-		ABZR87_RS05955	0.29	+0.1
1,273,387	+		ABZR87_RS05955	0.49	-1.6
1,273,410	-		ABZR87_RS05955	0.51	+0.1
1,273,410	-		ABZR87_RS05955	0.51	-0.9
1,273,451	+		ABZR87_RS05955	0.55	-0.5
1,273,452	-		ABZR87_RS05955	0.55	+0.2
1,273,730	-		ABZR87_RS05955	0.81	-0.3
1,273,760	-		ABZR87_RS05955	0.84	-0.6
1,274,043	+				+0.1
1,274,123	+				+0.1
1,274,199	+		ABZR87_RS05960	0.14	+0.2
1,274,199	+		ABZR87_RS05960	0.14	+0.5
1,274,199	+		ABZR87_RS05960	0.14	+0.6
1,274,199	+		ABZR87_RS05960	0.14	+0.0
1,274,199	+		ABZR87_RS05960	0.14	+1.1
1,274,199	+		ABZR87_RS05960	0.14	+0.3
1,274,200	-		ABZR87_RS05960	0.14	-0.6
1,274,200	-		ABZR87_RS05960	0.14	-0.7
1,274,200	-		ABZR87_RS05960	0.14	+0.1
1,274,200	-		ABZR87_RS05960	0.14	-2.2
1,274,238	+		ABZR87_RS05960	0.16	-0.1
1,274,376	+		ABZR87_RS05960	0.23	+0.5
1,274,377	-		ABZR87_RS05960	0.23	+0.5
1,274,377	-		ABZR87_RS05960	0.23	+0.8
1,274,898	+		ABZR87_RS05960	0.52	-1.7
1,274,898	+		ABZR87_RS05960	0.52	-2.2
1,274,899	-		ABZR87_RS05960	0.53	+0.8