Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05345

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05330 and ABZR87_RS05335 are separated by 338 nucleotidesABZR87_RS05335 and ABZR87_RS05340 are separated by 15 nucleotidesABZR87_RS05340 and ABZR87_RS05345 are separated by 4 nucleotidesABZR87_RS05345 and ABZR87_RS05350 are separated by 7 nucleotides ABZR87_RS05330: ABZR87_RS05330 - 30S ribosomal protein S21, at 1,124,885 to 1,125,097 _RS05330 ABZR87_RS05335: ABZR87_RS05335 - hypothetical protein, at 1,125,436 to 1,125,690 _RS05335 ABZR87_RS05340: ABZR87_RS05340 - low molecular weight protein tyrosine phosphatase family protein, at 1,125,706 to 1,126,029 _RS05340 ABZR87_RS05345: ABZR87_RS05345 - NUDIX hydrolase, at 1,126,034 to 1,126,423 _RS05345 ABZR87_RS05350: ABZR87_RS05350 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 1,126,431 to 1,127,876 _RS05350 Position (kb) 1126 1127Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1125.092 kb on + strandat 1125.092 kb on + strandat 1125.092 kb on + strandat 1125.092 kb on + strandat 1125.092 kb on + strandat 1125.093 kb on - strandat 1125.093 kb on - strandat 1125.093 kb on - strandat 1125.093 kb on - strandat 1125.095 kb on + strandat 1125.095 kb on + strandat 1125.095 kb on + strandat 1125.096 kb on - strandat 1125.096 kb on - strandat 1125.244 kb on - strandat 1125.244 kb on - strandat 1125.244 kb on - strandat 1125.252 kb on + strandat 1125.252 kb on + strandat 1125.252 kb on + strandat 1125.252 kb on + strandat 1125.253 kb on - strandat 1125.253 kb on - strandat 1125.346 kb on - strandat 1125.395 kb on + strandat 1125.395 kb on + strandat 1125.395 kb on + strandat 1125.395 kb on + strandat 1125.401 kb on - strandat 1125.441 kb on + strandat 1125.441 kb on + strandat 1125.441 kb on + strandat 1125.441 kb on + strandat 1125.442 kb on - strandat 1125.442 kb on - strandat 1125.442 kb on - strandat 1125.442 kb on - strandat 1125.442 kb on - strandat 1125.444 kb on + strandat 1125.444 kb on + strandat 1125.444 kb on + strandat 1125.445 kb on - strandat 1125.445 kb on - strandat 1125.445 kb on - strandat 1125.445 kb on - strandat 1125.445 kb on - strandat 1125.460 kb on + strandat 1125.460 kb on + strandat 1125.461 kb on - strandat 1125.461 kb on - strandat 1125.461 kb on - strandat 1125.461 kb on - strandat 1125.482 kb on - strand, within ABZR87_RS05335at 1125.538 kb on + strand, within ABZR87_RS05335at 1125.538 kb on + strand, within ABZR87_RS05335at 1125.538 kb on + strand, within ABZR87_RS05335at 1125.538 kb on + strand, within ABZR87_RS05335at 1125.538 kb on + strand, within ABZR87_RS05335at 1125.538 kb on + strand, within ABZR87_RS05335at 1125.538 kb on + strand, within ABZR87_RS05335at 1125.538 kb on + strand, within ABZR87_RS05335at 1125.538 kb on + strand, within ABZR87_RS05335at 1125.538 kb on + strand, within ABZR87_RS05335at 1125.539 kb on - strand, within ABZR87_RS05335at 1125.539 kb on - strand, within ABZR87_RS05335at 1125.539 kb on - strand, within ABZR87_RS05335at 1125.539 kb on - strand, within ABZR87_RS05335at 1125.539 kb on - strand, within ABZR87_RS05335at 1125.539 kb on - strand, within ABZR87_RS05335at 1125.539 kb on - strand, within ABZR87_RS05335at 1125.539 kb on - strand, within ABZR87_RS05335at 1125.539 kb on - strand, within ABZR87_RS05335at 1125.539 kb on - strand, within ABZR87_RS05335at 1125.539 kb on - strand, within ABZR87_RS05335at 1125.545 kb on + strand, within ABZR87_RS05335at 1125.607 kb on + strand, within ABZR87_RS05335at 1125.607 kb on + strand, within ABZR87_RS05335at 1125.607 kb on + strand, within ABZR87_RS05335at 1125.607 kb on + strand, within ABZR87_RS05335at 1125.608 kb on - strand, within ABZR87_RS05335at 1125.707 kb on + strandat 1125.708 kb on - strandat 1125.708 kb on - strandat 1125.773 kb on + strand, within ABZR87_RS05340at 1125.773 kb on + strand, within ABZR87_RS05340at 1125.773 kb on + strand, within ABZR87_RS05340at 1125.773 kb on + strand, within ABZR87_RS05340at 1125.773 kb on + strand, within ABZR87_RS05340at 1125.773 kb on + strand, within ABZR87_RS05340at 1125.773 kb on + strand, within ABZR87_RS05340at 1125.773 kb on + strand, within ABZR87_RS05340at 1125.774 kb on - strand, within ABZR87_RS05340at 1125.774 kb on - strand, within ABZR87_RS05340at 1125.774 kb on - strand, within ABZR87_RS05340at 1125.777 kb on + strand, within ABZR87_RS05340at 1125.777 kb on + strand, within ABZR87_RS05340at 1125.778 kb on - strand, within ABZR87_RS05340at 1125.787 kb on - strand, within ABZR87_RS05340at 1125.787 kb on - strand, within ABZR87_RS05340at 1125.814 kb on + strand, within ABZR87_RS05340at 1125.910 kb on + strand, within ABZR87_RS05340at 1125.910 kb on + strand, within ABZR87_RS05340at 1125.910 kb on + strand, within ABZR87_RS05340at 1125.910 kb on + strand, within ABZR87_RS05340at 1125.910 kb on + strand, within ABZR87_RS05340at 1125.910 kb on + strand, within ABZR87_RS05340at 1125.910 kb on + strand, within ABZR87_RS05340at 1125.911 kb on - strand, within ABZR87_RS05340at 1125.911 kb on - strand, within ABZR87_RS05340at 1125.911 kb on - strand, within ABZR87_RS05340at 1125.911 kb on - strand, within ABZR87_RS05340at 1125.911 kb on - strand, within ABZR87_RS05340at 1125.990 kb on + strand, within ABZR87_RS05340at 1125.991 kb on - strand, within ABZR87_RS05340at 1125.991 kb on - strand, within ABZR87_RS05340at 1125.994 kb on + strand, within ABZR87_RS05340at 1125.994 kb on + strand, within ABZR87_RS05340at 1126.035 kb on + strandat 1126.035 kb on + strandat 1126.035 kb on + strandat 1126.035 kb on + strandat 1126.036 kb on - strandat 1126.179 kb on + strand, within ABZR87_RS05345at 1126.179 kb on + strand, within ABZR87_RS05345at 1126.179 kb on + strand, within ABZR87_RS05345at 1126.179 kb on + strand, within ABZR87_RS05345at 1126.179 kb on + strand, within ABZR87_RS05345at 1126.179 kb on + strand, within ABZR87_RS05345at 1126.179 kb on + strand, within ABZR87_RS05345at 1126.179 kb on + strand, within ABZR87_RS05345at 1126.179 kb on + strand, within ABZR87_RS05345at 1126.179 kb on + strand, within ABZR87_RS05345at 1126.179 kb on + strand, within ABZR87_RS05345at 1126.179 kb on + strand, within ABZR87_RS05345at 1126.179 kb on + strand, within ABZR87_RS05345at 1126.179 kb on + strand, within ABZR87_RS05345at 1126.180 kb on - strand, within ABZR87_RS05345at 1126.180 kb on - strand, within ABZR87_RS05345at 1126.180 kb on - strand, within ABZR87_RS05345at 1126.180 kb on - strand, within ABZR87_RS05345at 1126.180 kb on - strand, within ABZR87_RS05345at 1126.180 kb on - strand, within ABZR87_RS05345at 1126.180 kb on - strand, within ABZR87_RS05345at 1126.180 kb on - strand, within ABZR87_RS05345at 1126.180 kb on - strand, within ABZR87_RS05345at 1126.180 kb on - strand, within ABZR87_RS05345at 1126.180 kb on - strand, within ABZR87_RS05345at 1126.189 kb on + strand, within ABZR87_RS05345at 1126.190 kb on - strand, within ABZR87_RS05345at 1126.190 kb on - strand, within ABZR87_RS05345at 1126.190 kb on - strand, within ABZR87_RS05345at 1126.190 kb on - strand, within ABZR87_RS05345at 1126.190 kb on - strand, within ABZR87_RS05345at 1126.224 kb on + strand, within ABZR87_RS05345at 1126.224 kb on + strand, within ABZR87_RS05345at 1126.224 kb on + strand, within ABZR87_RS05345at 1126.224 kb on + strand, within ABZR87_RS05345at 1126.224 kb on + strand, within ABZR87_RS05345at 1126.224 kb on + strand, within ABZR87_RS05345at 1126.224 kb on + strand, within ABZR87_RS05345at 1126.224 kb on + strand, within ABZR87_RS05345at 1126.225 kb on - strand, within ABZR87_RS05345at 1126.225 kb on - strand, within ABZR87_RS05345at 1126.225 kb on - strand, within ABZR87_RS05345at 1126.225 kb on - strand, within ABZR87_RS05345at 1126.225 kb on - strand, within ABZR87_RS05345at 1126.225 kb on - strand, within ABZR87_RS05345at 1126.225 kb on - strand, within ABZR87_RS05345at 1126.225 kb on - strand, within ABZR87_RS05345at 1126.225 kb on - strand, within ABZR87_RS05345at 1126.225 kb on - strand, within ABZR87_RS05345at 1126.225 kb on - strand, within ABZR87_RS05345at 1126.225 kb on - strand, within ABZR87_RS05345at 1126.225 kb on - strand, within ABZR87_RS05345at 1126.358 kb on + strand, within ABZR87_RS05345at 1126.358 kb on + strand, within ABZR87_RS05345at 1126.413 kb on + strandat 1126.442 kb on + strandat 1126.443 kb on - strandat 1126.496 kb on + strandat 1126.643 kb on - strand, within ABZR87_RS05350at 1127.022 kb on - strand, within ABZR87_RS05350

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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1,125,092 + +1.7
1,125,092 + +0.0
1,125,092 + -0.1
1,125,092 + -0.2
1,125,092 + -1.6
1,125,093 - -0.3
1,125,093 - -0.1
1,125,093 - -0.3
1,125,093 - +0.1
1,125,095 + -1.6
1,125,095 + -1.3
1,125,095 + -1.2
1,125,096 - +0.5
1,125,096 - +0.3
1,125,244 - +0.2
1,125,244 - +1.2
1,125,244 - -2.1
1,125,252 + +0.2
1,125,252 + -1.1
1,125,252 + -1.7
1,125,252 + -0.4
1,125,253 - -0.6
1,125,253 - -0.9
1,125,346 - +1.1
1,125,395 + -0.6
1,125,395 + -1.0
1,125,395 + -0.4
1,125,395 + +0.0
1,125,401 - +0.6
1,125,441 + -0.8
1,125,441 + -0.3
1,125,441 + +2.7
1,125,441 + -0.2
1,125,442 - -0.5
1,125,442 - -0.5
1,125,442 - -0.4
1,125,442 - +1.8
1,125,442 - -0.6
1,125,444 + +0.1
1,125,444 + +1.7
1,125,444 + +0.7
1,125,445 - -0.6
1,125,445 - -0.6
1,125,445 - +1.2
1,125,445 - -0.1
1,125,445 - -0.3
1,125,460 + -0.6
1,125,460 + -0.3
1,125,461 - +0.5
1,125,461 - -3.1
1,125,461 - -0.7
1,125,461 - +0.8
1,125,482 - ABZR87_RS05335 0.18 +1.2
1,125,538 + ABZR87_RS05335 0.40 +0.1
1,125,538 + ABZR87_RS05335 0.40 +0.4
1,125,538 + ABZR87_RS05335 0.40 -1.1
1,125,538 + ABZR87_RS05335 0.40 -0.7
1,125,538 + ABZR87_RS05335 0.40 -1.3
1,125,538 + ABZR87_RS05335 0.40 -0.8
1,125,538 + ABZR87_RS05335 0.40 -0.5
1,125,538 + ABZR87_RS05335 0.40 +0.2
1,125,538 + ABZR87_RS05335 0.40 +0.6
1,125,538 + ABZR87_RS05335 0.40 +0.3
1,125,539 - ABZR87_RS05335 0.40 +0.6
1,125,539 - ABZR87_RS05335 0.40 +0.3
1,125,539 - ABZR87_RS05335 0.40 +0.3
1,125,539 - ABZR87_RS05335 0.40 -0.6
1,125,539 - ABZR87_RS05335 0.40 -0.3
1,125,539 - ABZR87_RS05335 0.40 +0.4
1,125,539 - ABZR87_RS05335 0.40 +0.6
1,125,539 - ABZR87_RS05335 0.40 -0.8
1,125,539 - ABZR87_RS05335 0.40 -0.5
1,125,539 - ABZR87_RS05335 0.40 -0.5
1,125,539 - ABZR87_RS05335 0.40 -0.6
1,125,545 + ABZR87_RS05335 0.43 +1.2
1,125,607 + ABZR87_RS05335 0.67 -0.1
1,125,607 + ABZR87_RS05335 0.67 +0.3
1,125,607 + ABZR87_RS05335 0.67 -0.3
1,125,607 + ABZR87_RS05335 0.67 -1.4
1,125,608 - ABZR87_RS05335 0.67 -0.2
1,125,707 + +0.0
1,125,708 - -0.4
1,125,708 - +0.5
1,125,773 + ABZR87_RS05340 0.21 +0.4
1,125,773 + ABZR87_RS05340 0.21 -0.4
1,125,773 + ABZR87_RS05340 0.21 +0.1
1,125,773 + ABZR87_RS05340 0.21 -0.3
1,125,773 + ABZR87_RS05340 0.21 +0.2
1,125,773 + ABZR87_RS05340 0.21 -0.7
1,125,773 + ABZR87_RS05340 0.21 -0.1
1,125,773 + ABZR87_RS05340 0.21 +0.1
1,125,774 - ABZR87_RS05340 0.21 +0.7
1,125,774 - ABZR87_RS05340 0.21 +0.2
1,125,774 - ABZR87_RS05340 0.21 -0.4
1,125,777 + ABZR87_RS05340 0.22 -0.5
1,125,777 + ABZR87_RS05340 0.22 -0.2
1,125,778 - ABZR87_RS05340 0.22 +0.7
1,125,787 - ABZR87_RS05340 0.25 -0.5
1,125,787 - ABZR87_RS05340 0.25 +0.3
1,125,814 + ABZR87_RS05340 0.33 -1.0
1,125,910 + ABZR87_RS05340 0.63 +1.7
1,125,910 + ABZR87_RS05340 0.63 +0.1
1,125,910 + ABZR87_RS05340 0.63 +0.1
1,125,910 + ABZR87_RS05340 0.63 -0.9
1,125,910 + ABZR87_RS05340 0.63 -0.7
1,125,910 + ABZR87_RS05340 0.63 +1.0
1,125,910 + ABZR87_RS05340 0.63 -1.3
1,125,911 - ABZR87_RS05340 0.63 -0.6
1,125,911 - ABZR87_RS05340 0.63 +0.9
1,125,911 - ABZR87_RS05340 0.63 -0.0
1,125,911 - ABZR87_RS05340 0.63 +1.3
1,125,911 - ABZR87_RS05340 0.63 +1.0
1,125,990 + ABZR87_RS05340 0.88 +1.5
1,125,991 - ABZR87_RS05340 0.88 -0.9
1,125,991 - ABZR87_RS05340 0.88 -0.9
1,125,994 + ABZR87_RS05340 0.89 +0.3
1,125,994 + ABZR87_RS05340 0.89 +0.3
1,126,035 + -0.0
1,126,035 + -1.1
1,126,035 + -1.0
1,126,035 + -0.6
1,126,036 - +0.2
1,126,179 + ABZR87_RS05345 0.37 +0.5
1,126,179 + ABZR87_RS05345 0.37 +0.1
1,126,179 + ABZR87_RS05345 0.37 -0.3
1,126,179 + ABZR87_RS05345 0.37 +0.4
1,126,179 + ABZR87_RS05345 0.37 -0.8
1,126,179 + ABZR87_RS05345 0.37 -1.1
1,126,179 + ABZR87_RS05345 0.37 +0.6
1,126,179 + ABZR87_RS05345 0.37 -0.2
1,126,179 + ABZR87_RS05345 0.37 +0.7
1,126,179 + ABZR87_RS05345 0.37 +0.3
1,126,179 + ABZR87_RS05345 0.37 -0.2
1,126,179 + ABZR87_RS05345 0.37 -0.4
1,126,179 + ABZR87_RS05345 0.37 +0.2
1,126,179 + ABZR87_RS05345 0.37 +0.5
1,126,180 - ABZR87_RS05345 0.37 -0.4
1,126,180 - ABZR87_RS05345 0.37 -0.9
1,126,180 - ABZR87_RS05345 0.37 -0.1
1,126,180 - ABZR87_RS05345 0.37 +0.4
1,126,180 - ABZR87_RS05345 0.37 +0.2
1,126,180 - ABZR87_RS05345 0.37 -2.0
1,126,180 - ABZR87_RS05345 0.37 -0.8
1,126,180 - ABZR87_RS05345 0.37 +0.1
1,126,180 - ABZR87_RS05345 0.37 -0.6
1,126,180 - ABZR87_RS05345 0.37 +0.1
1,126,180 - ABZR87_RS05345 0.37 +0.1
1,126,189 + ABZR87_RS05345 0.40 +0.5
1,126,190 - ABZR87_RS05345 0.40 +0.0
1,126,190 - ABZR87_RS05345 0.40 +0.8
1,126,190 - ABZR87_RS05345 0.40 -0.0
1,126,190 - ABZR87_RS05345 0.40 -1.3
1,126,190 - ABZR87_RS05345 0.40 -0.2
1,126,224 + ABZR87_RS05345 0.49 -0.1
1,126,224 + ABZR87_RS05345 0.49 +0.8
1,126,224 + ABZR87_RS05345 0.49 -1.0
1,126,224 + ABZR87_RS05345 0.49 -0.6
1,126,224 + ABZR87_RS05345 0.49 -0.5
1,126,224 + ABZR87_RS05345 0.49 +0.9
1,126,224 + ABZR87_RS05345 0.49 -0.1
1,126,224 + ABZR87_RS05345 0.49 +0.8
1,126,225 - ABZR87_RS05345 0.49 -0.0
1,126,225 - ABZR87_RS05345 0.49 -0.2
1,126,225 - ABZR87_RS05345 0.49 -0.6
1,126,225 - ABZR87_RS05345 0.49 +0.4
1,126,225 - ABZR87_RS05345 0.49 +0.2
1,126,225 - ABZR87_RS05345 0.49 +0.9
1,126,225 - ABZR87_RS05345 0.49 -0.3
1,126,225 - ABZR87_RS05345 0.49 -0.2
1,126,225 - ABZR87_RS05345 0.49 -0.8
1,126,225 - ABZR87_RS05345 0.49 -0.9
1,126,225 - ABZR87_RS05345 0.49 -0.4
1,126,225 - ABZR87_RS05345 0.49 -0.9
1,126,225 - ABZR87_RS05345 0.49 +0.4
1,126,358 + ABZR87_RS05345 0.83 -1.3
1,126,358 + ABZR87_RS05345 0.83 -0.9
1,126,413 + +0.4
1,126,442 + -1.1
1,126,443 - -0.3
1,126,496 + -1.9
1,126,643 - ABZR87_RS05350 0.15 -0.8
1,127,022 - ABZR87_RS05350 0.41 -3.6

Or see this region's nucleotide sequence