Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05015

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
1,054,591	+		ABZR87_RS05010	0.22	+1.2
1,054,639	+		ABZR87_RS05010	0.27	+0.1
1,054,639	+		ABZR87_RS05010	0.27	-1.2
1,054,640	-		ABZR87_RS05010	0.27	+1.2
1,054,640	-		ABZR87_RS05010	0.27	+1.2
1,054,640	-		ABZR87_RS05010	0.27	-1.8
1,054,805	+		ABZR87_RS05010	0.41	-0.7
1,054,955	-		ABZR87_RS05010	0.54	+0.1
1,054,963	+		ABZR87_RS05010	0.55	-0.7
1,054,964	-		ABZR87_RS05010	0.55	+0.1
1,055,059	+		ABZR87_RS05010	0.63	+0.1
1,055,059	+		ABZR87_RS05010	0.63	+0.1
1,055,060	-		ABZR87_RS05010	0.63	+1.6
1,055,065	+		ABZR87_RS05010	0.64	+0.9
1,055,065	+		ABZR87_RS05010	0.64	-1.2
1,055,098	+		ABZR87_RS05010	0.67	+0.1
1,055,098	+		ABZR87_RS05010	0.67	+1.6
1,055,099	-		ABZR87_RS05010	0.67	+0.1
1,055,239	+		ABZR87_RS05010	0.79	+0.1
1,055,240	-		ABZR87_RS05010	0.79	-1.0
1,055,461	-				-1.8
1,055,461	-				+0.1
1,055,508	+				+0.5
1,055,508	+				-0.2
1,055,508	+				-0.5
1,055,508	+				-1.9
1,055,509	-				-0.7
1,055,509	-				+0.5
1,055,509	-				-0.3
1,055,968	+		ABZR87_RS05015	0.19	-0.8
1,056,039	+		ABZR87_RS05015	0.22	-1.9
1,056,040	-		ABZR87_RS05015	0.22	+0.1
1,056,040	-		ABZR87_RS05015	0.22	+0.6
1,056,042	+		ABZR87_RS05015	0.22	-1.9
1,056,043	-		ABZR87_RS05015	0.22	-1.4
1,056,222	+		ABZR87_RS05015	0.30	-0.4
1,056,222	+		ABZR87_RS05015	0.30	+1.6
1,056,223	-		ABZR87_RS05015	0.30	-2.2
1,056,258	+		ABZR87_RS05015	0.31	+1.6
1,056,259	-		ABZR87_RS05015	0.31	-1.7
1,056,259	-		ABZR87_RS05015	0.31	-2.4
1,056,259	-		ABZR87_RS05015	0.31	+0.1
1,056,361	-		ABZR87_RS05015	0.35	+0.1
1,056,361	-		ABZR87_RS05015	0.35	+0.7
1,056,502	-		ABZR87_RS05015	0.41	-0.4
1,056,540	+		ABZR87_RS05015	0.43	-1.2
1,056,567	+		ABZR87_RS05015	0.44	+1.6
1,056,568	-		ABZR87_RS05015	0.44	+1.6
1,056,711	+		ABZR87_RS05015	0.50	-1.7
1,056,711	+		ABZR87_RS05015	0.50	+1.1
1,056,711	+		ABZR87_RS05015	0.50	+0.6
1,056,711	+		ABZR87_RS05015	0.50	-0.9
1,056,711	+		ABZR87_RS05015	0.50	-0.9
1,056,712	-		ABZR87_RS05015	0.50	-0.4
1,056,712	-		ABZR87_RS05015	0.50	-0.4
1,056,712	-		ABZR87_RS05015	0.50	+2.6
1,056,712	-		ABZR87_RS05015	0.50	+0.1
1,056,712	-		ABZR87_RS05015	0.50	+0.6
1,056,741	+		ABZR87_RS05015	0.51	+0.1
1,056,741	+		ABZR87_RS05015	0.51	-0.4
1,056,741	+		ABZR87_RS05015	0.51	-1.5
1,056,742	-		ABZR87_RS05015	0.51	-0.7
1,056,742	-		ABZR87_RS05015	0.51	-1.8
1,056,742	-		ABZR87_RS05015	0.51	+0.1
1,056,742	-		ABZR87_RS05015	0.51	-0.7
1,056,742	-		ABZR87_RS05015	0.51	+1.6
1,056,742	-		ABZR87_RS05015	0.51	+1.6
1,056,883	-		ABZR87_RS05015	0.57	+0.6
1,057,207	-		ABZR87_RS05015	0.71	-1.2
1,057,237	-		ABZR87_RS05015	0.72	-1.2
1,057,266	+		ABZR87_RS05015	0.73	-0.4
1,057,267	-		ABZR87_RS05015	0.73	+0.3
1,057,281	+		ABZR87_RS05015	0.74	+1.1
1,057,281	+		ABZR87_RS05015	0.74	-0.9
1,057,281	+		ABZR87_RS05015	0.74	-1.4
1,057,281	+		ABZR87_RS05015	0.74	+1.1
1,057,666	-		ABZR87_RS05015	0.90	-0.9
1,057,675	-				+2.6
1,057,675	-				+0.6
1,057,675	-				-0.8
1,057,773	+				-1.7
1,057,774	-				-0.9
1,057,930	-				-0.5
1,057,956	+				+0.1
1,057,957	-				-0.1
1,057,957	-				+0.4
1,058,205	+		ABZR87_RS05020	0.49	-0.9
1,058,221	-		ABZR87_RS05020	0.52	+2.6
1,058,451	+				+1.6
1,058,452	-				-0.2
1,058,452	-				+0.2
1,058,452	-				-0.0
1,058,452	-				+0.3
1,058,452	-				+0.8