Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04365 and ABZR87_RS04370 are separated by 83 nucleotides ABZR87_RS04370 and ABZR87_RS04375 are separated by 102 nucleotides ABZR87_RS04375 and ABZR87_RS04380 are separated by 288 nucleotides
ABZR87_RS04365: ABZR87_RS04365 - polyphosphate kinase 2, at 910,907 to 911,809
_RS04365
ABZR87_RS04370: ABZR87_RS04370 - inorganic phosphate transporter, at 911,893 to 913,479
_RS04370
ABZR87_RS04375: ABZR87_RS04375 - acylphosphatase, at 913,582 to 913,869
_RS04375
ABZR87_RS04380: ABZR87_RS04380 - ABC transporter permease subunit, at 914,158 to 915,942
_RS04380
Position (kb) 911
912
913
914 Strain fitness (log2 ratio) -2
-1
0
1
2 at 911.054 kb on + strand, within ABZR87_RS04365 at 911.054 kb on + strand, within ABZR87_RS04365 at 911.055 kb on - strand, within ABZR87_RS04365 at 911.055 kb on - strand, within ABZR87_RS04365 at 911.055 kb on - strand, within ABZR87_RS04365 at 911.143 kb on - strand, within ABZR87_RS04365 at 911.264 kb on + strand, within ABZR87_RS04365 at 911.265 kb on - strand, within ABZR87_RS04365 at 911.265 kb on - strand, within ABZR87_RS04365 at 911.276 kb on + strand, within ABZR87_RS04365 at 911.276 kb on + strand, within ABZR87_RS04365 at 911.276 kb on + strand, within ABZR87_RS04365 at 911.277 kb on - strand, within ABZR87_RS04365 at 911.280 kb on + strand, within ABZR87_RS04365 at 911.280 kb on + strand, within ABZR87_RS04365 at 911.280 kb on + strand, within ABZR87_RS04365 at 911.281 kb on - strand, within ABZR87_RS04365 at 911.330 kb on + strand, within ABZR87_RS04365 at 911.331 kb on - strand, within ABZR87_RS04365 at 911.381 kb on + strand, within ABZR87_RS04365 at 911.381 kb on + strand, within ABZR87_RS04365 at 911.453 kb on + strand, within ABZR87_RS04365 at 911.454 kb on - strand, within ABZR87_RS04365 at 911.573 kb on + strand, within ABZR87_RS04365 at 911.573 kb on + strand, within ABZR87_RS04365 at 911.573 kb on + strand, within ABZR87_RS04365 at 911.574 kb on - strand, within ABZR87_RS04365 at 911.574 kb on - strand, within ABZR87_RS04365 at 911.574 kb on - strand, within ABZR87_RS04365 at 911.574 kb on - strand, within ABZR87_RS04365 at 911.575 kb on + strand, within ABZR87_RS04365 at 911.576 kb on - strand, within ABZR87_RS04365 at 911.576 kb on - strand, within ABZR87_RS04365 at 911.702 kb on + strand, within ABZR87_RS04365 at 911.702 kb on + strand, within ABZR87_RS04365 at 911.703 kb on - strand, within ABZR87_RS04365 at 911.759 kb on + strand at 911.759 kb on + strand at 911.759 kb on + strand at 911.760 kb on - strand at 911.760 kb on - strand at 911.760 kb on - strand at 911.760 kb on - strand at 911.760 kb on - strand at 911.760 kb on - strand at 911.804 kb on + strand at 911.890 kb on + strand at 911.918 kb on + strand at 911.919 kb on - strand at 911.919 kb on - strand at 911.919 kb on - strand at 911.988 kb on + strand at 911.989 kb on - strand at 911.989 kb on - strand at 912.074 kb on + strand, within ABZR87_RS04370 at 912.074 kb on + strand, within ABZR87_RS04370 at 912.074 kb on + strand, within ABZR87_RS04370 at 912.074 kb on + strand, within ABZR87_RS04370 at 912.074 kb on + strand, within ABZR87_RS04370 at 912.075 kb on - strand, within ABZR87_RS04370 at 912.075 kb on - strand, within ABZR87_RS04370 at 912.075 kb on - strand, within ABZR87_RS04370 at 912.075 kb on - strand, within ABZR87_RS04370 at 912.134 kb on + strand, within ABZR87_RS04370 at 912.134 kb on + strand, within ABZR87_RS04370 at 912.134 kb on + strand, within ABZR87_RS04370 at 912.281 kb on + strand, within ABZR87_RS04370 at 912.281 kb on + strand, within ABZR87_RS04370 at 912.282 kb on - strand, within ABZR87_RS04370 at 912.282 kb on - strand, within ABZR87_RS04370 at 912.282 kb on - strand, within ABZR87_RS04370 at 912.282 kb on - strand, within ABZR87_RS04370 at 912.282 kb on - strand, within ABZR87_RS04370 at 912.282 kb on - strand, within ABZR87_RS04370 at 912.282 kb on - strand, within ABZR87_RS04370 at 912.282 kb on - strand, within ABZR87_RS04370 at 912.365 kb on + strand, within ABZR87_RS04370 at 912.365 kb on + strand, within ABZR87_RS04370 at 912.365 kb on + strand, within ABZR87_RS04370 at 912.365 kb on + strand, within ABZR87_RS04370 at 912.366 kb on - strand, within ABZR87_RS04370 at 912.366 kb on - strand, within ABZR87_RS04370 at 912.366 kb on - strand, within ABZR87_RS04370 at 912.366 kb on - strand, within ABZR87_RS04370 at 912.366 kb on - strand, within ABZR87_RS04370 at 912.506 kb on + strand, within ABZR87_RS04370 at 912.506 kb on + strand, within ABZR87_RS04370 at 912.506 kb on + strand, within ABZR87_RS04370 at 912.506 kb on + strand, within ABZR87_RS04370 at 912.506 kb on + strand, within ABZR87_RS04370 at 912.507 kb on - strand, within ABZR87_RS04370 at 912.507 kb on - strand, within ABZR87_RS04370 at 912.507 kb on - strand, within ABZR87_RS04370 at 912.507 kb on - strand, within ABZR87_RS04370 at 912.507 kb on - strand, within ABZR87_RS04370 at 912.507 kb on - strand, within ABZR87_RS04370 at 912.557 kb on + strand, within ABZR87_RS04370 at 912.557 kb on + strand, within ABZR87_RS04370 at 912.558 kb on - strand, within ABZR87_RS04370 at 912.558 kb on - strand, within ABZR87_RS04370 at 912.558 kb on - strand, within ABZR87_RS04370 at 912.558 kb on - strand, within ABZR87_RS04370 at 912.558 kb on - strand, within ABZR87_RS04370 at 912.797 kb on + strand, within ABZR87_RS04370 at 912.798 kb on - strand, within ABZR87_RS04370 at 912.798 kb on - strand, within ABZR87_RS04370 at 913.019 kb on + strand, within ABZR87_RS04370 at 913.019 kb on + strand, within ABZR87_RS04370 at 913.019 kb on + strand, within ABZR87_RS04370 at 913.019 kb on + strand, within ABZR87_RS04370 at 913.019 kb on + strand, within ABZR87_RS04370 at 913.019 kb on + strand, within ABZR87_RS04370 at 913.020 kb on - strand, within ABZR87_RS04370 at 913.020 kb on - strand, within ABZR87_RS04370 at 913.141 kb on + strand, within ABZR87_RS04370 at 913.142 kb on - strand, within ABZR87_RS04370 at 913.226 kb on + strand, within ABZR87_RS04370 at 913.227 kb on - strand, within ABZR87_RS04370 at 913.227 kb on - strand, within ABZR87_RS04370 at 913.309 kb on + strand, within ABZR87_RS04370 at 913.309 kb on + strand, within ABZR87_RS04370 at 913.310 kb on - strand, within ABZR87_RS04370 at 913.379 kb on + strand at 913.379 kb on + strand at 913.419 kb on + strand at 913.419 kb on + strand at 913.420 kb on - strand at 913.420 kb on - strand at 913.517 kb on - strand at 913.517 kb on - strand at 913.517 kb on - strand at 913.536 kb on + strand at 913.536 kb on + strand at 913.536 kb on + strand at 913.537 kb on - strand at 913.537 kb on - strand at 913.537 kb on - strand at 913.537 kb on - strand at 913.537 kb on - strand at 913.583 kb on + strand at 913.583 kb on + strand at 913.583 kb on + strand at 913.583 kb on + strand at 913.583 kb on + strand at 913.584 kb on - strand at 913.584 kb on - strand at 913.584 kb on - strand at 913.584 kb on - strand at 913.584 kb on - strand at 913.584 kb on - strand at 913.837 kb on + strand, within ABZR87_RS04375 at 913.838 kb on - strand, within ABZR87_RS04375 at 913.838 kb on - strand, within ABZR87_RS04375 at 913.838 kb on - strand, within ABZR87_RS04375 at 913.908 kb on + strand at 913.909 kb on - strand at 913.999 kb on + strand at 914.000 kb on - strand at 914.008 kb on + strand at 914.008 kb on + strand at 914.008 kb on + strand at 914.013 kb on + strand at 914.014 kb on - strand at 914.014 kb on - strand at 914.014 kb on - strand at 914.074 kb on + strand at 914.075 kb on + strand at 914.075 kb on + strand at 914.075 kb on + strand at 914.075 kb on + strand at 914.075 kb on + strand at 914.075 kb on + strand at 914.076 kb on - strand at 914.076 kb on - strand at 914.076 kb on - strand at 914.076 kb on - strand at 914.076 kb on - strand at 914.076 kb on - strand at 914.076 kb on - strand at 914.076 kb on - strand at 914.089 kb on + strand at 914.089 kb on + strand at 914.089 kb on + strand at 914.089 kb on + strand at 914.089 kb on + strand at 914.089 kb on + strand at 914.089 kb on + strand at 914.089 kb on + strand at 914.090 kb on - strand at 914.090 kb on - strand at 914.090 kb on - strand at 914.090 kb on - strand at 914.090 kb on - strand at 914.090 kb on - strand at 914.090 kb on - strand at 914.090 kb on - strand at 914.317 kb on + strand at 914.317 kb on + strand at 914.317 kb on + strand at 914.344 kb on + strand, within ABZR87_RS04380 at 914.396 kb on - strand, within ABZR87_RS04380 at 914.396 kb on - strand, within ABZR87_RS04380 at 914.396 kb on - strand, within ABZR87_RS04380 at 914.396 kb on - strand, within ABZR87_RS04380 at 914.398 kb on + strand, within ABZR87_RS04380 at 914.398 kb on + strand, within ABZR87_RS04380 at 914.398 kb on + strand, within ABZR87_RS04380 at 914.398 kb on + strand, within ABZR87_RS04380 at 914.398 kb on + strand, within ABZR87_RS04380 at 914.399 kb on - strand, within ABZR87_RS04380 at 914.399 kb on - strand, within ABZR87_RS04380 at 914.399 kb on - strand, within ABZR87_RS04380
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 911,054 + ABZR87_RS04365 0.16 -0.1 911,054 + ABZR87_RS04365 0.16 -0.9 911,055 - ABZR87_RS04365 0.16 +0.0 911,055 - ABZR87_RS04365 0.16 +1.2 911,055 - ABZR87_RS04365 0.16 -0.3 911,143 - ABZR87_RS04365 0.26 +0.1 911,264 + ABZR87_RS04365 0.40 -0.7 911,265 - ABZR87_RS04365 0.40 -0.1 911,265 - ABZR87_RS04365 0.40 +0.9 911,276 + ABZR87_RS04365 0.41 +0.4 911,276 + ABZR87_RS04365 0.41 -0.1 911,276 + ABZR87_RS04365 0.41 -0.6 911,277 - ABZR87_RS04365 0.41 -0.1 911,280 + ABZR87_RS04365 0.41 -1.7 911,280 + ABZR87_RS04365 0.41 -0.3 911,280 + ABZR87_RS04365 0.41 -0.2 911,281 - ABZR87_RS04365 0.41 +0.1 911,330 + ABZR87_RS04365 0.47 -0.0 911,331 - ABZR87_RS04365 0.47 +0.8 911,381 + ABZR87_RS04365 0.52 +0.3 911,381 + ABZR87_RS04365 0.52 -0.5 911,453 + ABZR87_RS04365 0.60 +0.1 911,454 - ABZR87_RS04365 0.61 -1.7 911,573 + ABZR87_RS04365 0.74 -0.3 911,573 + ABZR87_RS04365 0.74 -1.1 911,573 + ABZR87_RS04365 0.74 -0.6 911,574 - ABZR87_RS04365 0.74 +0.5 911,574 - ABZR87_RS04365 0.74 -0.7 911,574 - ABZR87_RS04365 0.74 -0.4 911,574 - ABZR87_RS04365 0.74 +0.8 911,575 + ABZR87_RS04365 0.74 -0.8 911,576 - ABZR87_RS04365 0.74 -0.7 911,576 - ABZR87_RS04365 0.74 +0.5 911,702 + ABZR87_RS04365 0.88 -1.0 911,702 + ABZR87_RS04365 0.88 -0.6 911,703 - ABZR87_RS04365 0.88 +1.0 911,759 + -0.1 911,759 + +1.0 911,759 + +0.8 911,760 - +0.1 911,760 - -1.0 911,760 - -1.2 911,760 - -1.0 911,760 - +0.0 911,760 - +0.8 911,804 + +0.6 911,890 + +0.1 911,918 + -0.3 911,919 - -0.9 911,919 - +1.6 911,919 - +0.0 911,988 + -0.6 911,989 - +0.2 911,989 - -0.1 912,074 + ABZR87_RS04370 0.11 -0.2 912,074 + ABZR87_RS04370 0.11 -0.8 912,074 + ABZR87_RS04370 0.11 -1.8 912,074 + ABZR87_RS04370 0.11 -0.8 912,074 + ABZR87_RS04370 0.11 +0.2 912,075 - ABZR87_RS04370 0.11 -1.8 912,075 - ABZR87_RS04370 0.11 +0.6 912,075 - ABZR87_RS04370 0.11 +0.1 912,075 - ABZR87_RS04370 0.11 +0.3 912,134 + ABZR87_RS04370 0.15 -0.0 912,134 + ABZR87_RS04370 0.15 +0.5 912,134 + ABZR87_RS04370 0.15 -0.7 912,281 + ABZR87_RS04370 0.24 +0.5 912,281 + ABZR87_RS04370 0.24 -0.1 912,282 - ABZR87_RS04370 0.25 -0.3 912,282 - ABZR87_RS04370 0.25 -1.0 912,282 - ABZR87_RS04370 0.25 +0.4 912,282 - ABZR87_RS04370 0.25 -0.4 912,282 - ABZR87_RS04370 0.25 +1.0 912,282 - ABZR87_RS04370 0.25 -0.9 912,282 - ABZR87_RS04370 0.25 -0.7 912,282 - ABZR87_RS04370 0.25 -0.2 912,365 + ABZR87_RS04370 0.30 +0.0 912,365 + ABZR87_RS04370 0.30 +0.4 912,365 + ABZR87_RS04370 0.30 -1.5 912,365 + ABZR87_RS04370 0.30 -0.6 912,366 - ABZR87_RS04370 0.30 -1.1 912,366 - ABZR87_RS04370 0.30 -0.0 912,366 - ABZR87_RS04370 0.30 +0.2 912,366 - ABZR87_RS04370 0.30 +0.5 912,366 - ABZR87_RS04370 0.30 -0.7 912,506 + ABZR87_RS04370 0.39 -0.2 912,506 + ABZR87_RS04370 0.39 -0.0 912,506 + ABZR87_RS04370 0.39 +0.1 912,506 + ABZR87_RS04370 0.39 -0.2 912,506 + ABZR87_RS04370 0.39 -0.2 912,507 - ABZR87_RS04370 0.39 +0.0 912,507 - ABZR87_RS04370 0.39 -0.8 912,507 - ABZR87_RS04370 0.39 +0.0 912,507 - ABZR87_RS04370 0.39 -0.4 912,507 - ABZR87_RS04370 0.39 -0.3 912,507 - ABZR87_RS04370 0.39 +0.0 912,557 + ABZR87_RS04370 0.42 +0.1 912,557 + ABZR87_RS04370 0.42 -1.3 912,558 - ABZR87_RS04370 0.42 +1.4 912,558 - ABZR87_RS04370 0.42 +0.1 912,558 - ABZR87_RS04370 0.42 -0.1 912,558 - ABZR87_RS04370 0.42 -0.6 912,558 - ABZR87_RS04370 0.42 -0.3 912,797 + ABZR87_RS04370 0.57 +0.6 912,798 - ABZR87_RS04370 0.57 -0.2 912,798 - ABZR87_RS04370 0.57 -0.3 913,019 + ABZR87_RS04370 0.71 -0.1 913,019 + ABZR87_RS04370 0.71 -0.2 913,019 + ABZR87_RS04370 0.71 -1.5 913,019 + ABZR87_RS04370 0.71 -2.1 913,019 + ABZR87_RS04370 0.71 +0.1 913,019 + ABZR87_RS04370 0.71 +0.2 913,020 - ABZR87_RS04370 0.71 -0.7 913,020 - ABZR87_RS04370 0.71 +1.0 913,141 + ABZR87_RS04370 0.79 -0.7 913,142 - ABZR87_RS04370 0.79 +0.5 913,226 + ABZR87_RS04370 0.84 +0.2 913,227 - ABZR87_RS04370 0.84 -0.4 913,227 - ABZR87_RS04370 0.84 -0.7 913,309 + ABZR87_RS04370 0.89 -0.4 913,309 + ABZR87_RS04370 0.89 -0.2 913,310 - ABZR87_RS04370 0.89 -0.4 913,379 + -1.6 913,379 + +1.9 913,419 + +0.2 913,419 + +0.4 913,420 - +0.8 913,420 - -0.7 913,517 - +2.1 913,517 - -0.5 913,517 - -0.4 913,536 + -2.0 913,536 + +0.3 913,536 + +0.0 913,537 - +0.3 913,537 - +0.2 913,537 - +0.6 913,537 - +0.3 913,537 - -1.0 913,583 + -0.3 913,583 + -0.4 913,583 + +0.3 913,583 + +1.2 913,583 + -0.9 913,584 - -0.3 913,584 - -1.1 913,584 - -1.6 913,584 - -0.1 913,584 - +0.2 913,584 - -0.6 913,837 + ABZR87_RS04375 0.89 -1.0 913,838 - ABZR87_RS04375 0.89 -1.1 913,838 - ABZR87_RS04375 0.89 +0.1 913,838 - ABZR87_RS04375 0.89 -0.2 913,908 + -0.4 913,909 - -0.7 913,999 + -1.7 914,000 - -0.2 914,008 + +0.1 914,008 + +0.9 914,008 + -1.0 914,013 + -1.4 914,014 - -1.2 914,014 - -0.0 914,014 - -1.0 914,074 + -0.9 914,075 + +0.4 914,075 + -1.0 914,075 + +0.3 914,075 + -1.7 914,075 + +0.6 914,075 + -0.1 914,076 - -0.3 914,076 - -0.7 914,076 - -0.8 914,076 - -1.0 914,076 - +0.0 914,076 - +0.4 914,076 - +0.5 914,076 - +0.9 914,089 + +0.5 914,089 + +0.4 914,089 + +1.0 914,089 + -0.3 914,089 + -1.6 914,089 + +1.3 914,089 + -0.6 914,089 + +0.5 914,090 - -0.5 914,090 - +0.5 914,090 - +1.1 914,090 - +0.0 914,090 - -0.5 914,090 - -0.0 914,090 - +1.9 914,090 - +0.8 914,317 + -0.1 914,317 + +0.6 914,317 + -0.7 914,344 + ABZR87_RS04380 0.10 +0.6 914,396 - ABZR87_RS04380 0.13 +0.4 914,396 - ABZR87_RS04380 0.13 -0.8 914,396 - ABZR87_RS04380 0.13 -0.3 914,396 - ABZR87_RS04380 0.13 +0.3 914,398 + ABZR87_RS04380 0.13 -0.0 914,398 + ABZR87_RS04380 0.13 -0.2 914,398 + ABZR87_RS04380 0.13 -0.3 914,398 + ABZR87_RS04380 0.13 +1.0 914,398 + ABZR87_RS04380 0.13 +0.2 914,399 - ABZR87_RS04380 0.14 -0.1 914,399 - ABZR87_RS04380 0.14 +0.7 914,399 - ABZR87_RS04380 0.14 +0.5
Or see this region's nucleotide sequence