Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04350 and ABZR87_RS04355 are separated by 143 nucleotides ABZR87_RS04355 and ABZR87_RS04360 are separated by 60 nucleotides
ABZR87_RS04350: ABZR87_RS04350 - citrate synthase family protein, at 907,075 to 908,307
_RS04350
ABZR87_RS04355: ABZR87_RS04355 - CoA transferase, at 908,451 to 909,848
_RS04355
ABZR87_RS04360: ABZR87_RS04360 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 909,909 to 910,766
_RS04360
Position (kb) 908
909
910 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 907.766 kb on - strand, within ABZR87_RS04350 at 907.766 kb on - strand, within ABZR87_RS04350 at 907.866 kb on + strand, within ABZR87_RS04350 at 907.867 kb on - strand, within ABZR87_RS04350 at 907.867 kb on - strand, within ABZR87_RS04350 at 907.914 kb on - strand, within ABZR87_RS04350 at 908.039 kb on + strand, within ABZR87_RS04350 at 908.040 kb on - strand, within ABZR87_RS04350 at 908.237 kb on + strand at 908.237 kb on + strand at 908.237 kb on + strand at 908.237 kb on + strand at 908.237 kb on + strand at 908.237 kb on + strand at 908.237 kb on + strand at 908.238 kb on - strand at 908.238 kb on - strand at 908.238 kb on - strand at 908.238 kb on - strand at 908.238 kb on - strand at 908.243 kb on + strand at 908.243 kb on + strand at 908.243 kb on + strand at 908.243 kb on + strand at 908.244 kb on - strand at 908.244 kb on - strand at 908.244 kb on - strand at 908.297 kb on + strand at 908.348 kb on + strand at 908.383 kb on + strand at 908.383 kb on + strand at 908.384 kb on - strand at 908.384 kb on - strand at 908.766 kb on + strand, within ABZR87_RS04355 at 908.767 kb on - strand, within ABZR87_RS04355 at 908.767 kb on - strand, within ABZR87_RS04355 at 908.767 kb on - strand, within ABZR87_RS04355 at 908.767 kb on - strand, within ABZR87_RS04355 at 908.767 kb on - strand, within ABZR87_RS04355 at 908.853 kb on + strand, within ABZR87_RS04355 at 908.853 kb on + strand, within ABZR87_RS04355 at 908.854 kb on - strand, within ABZR87_RS04355 at 908.854 kb on - strand, within ABZR87_RS04355 at 908.854 kb on - strand, within ABZR87_RS04355 at 909.300 kb on - strand, within ABZR87_RS04355 at 909.300 kb on - strand, within ABZR87_RS04355 at 909.300 kb on - strand, within ABZR87_RS04355 at 909.387 kb on + strand, within ABZR87_RS04355 at 909.405 kb on + strand, within ABZR87_RS04355 at 909.405 kb on + strand, within ABZR87_RS04355 at 909.405 kb on + strand, within ABZR87_RS04355 at 909.405 kb on + strand, within ABZR87_RS04355 at 909.406 kb on - strand, within ABZR87_RS04355 at 909.411 kb on + strand, within ABZR87_RS04355 at 909.411 kb on + strand, within ABZR87_RS04355 at 909.703 kb on - strand, within ABZR87_RS04355 at 909.703 kb on - strand, within ABZR87_RS04355 at 909.703 kb on - strand, within ABZR87_RS04355 at 909.720 kb on + strand at 909.721 kb on - strand at 909.846 kb on + strand at 909.846 kb on + strand at 909.847 kb on - strand at 909.847 kb on - strand at 909.847 kb on - strand at 909.847 kb on - strand at 909.847 kb on - strand at 909.859 kb on + strand at 909.885 kb on - strand at 909.885 kb on - strand at 909.885 kb on - strand at 909.918 kb on + strand at 909.918 kb on + strand at 909.918 kb on + strand at 909.990 kb on + strand at 909.991 kb on - strand at 910.020 kb on + strand, within ABZR87_RS04360 at 910.020 kb on + strand, within ABZR87_RS04360 at 910.020 kb on + strand, within ABZR87_RS04360 at 910.021 kb on - strand, within ABZR87_RS04360 at 910.021 kb on - strand, within ABZR87_RS04360 at 910.021 kb on - strand, within ABZR87_RS04360 at 910.050 kb on + strand, within ABZR87_RS04360 at 910.050 kb on + strand, within ABZR87_RS04360 at 910.161 kb on + strand, within ABZR87_RS04360 at 910.161 kb on + strand, within ABZR87_RS04360 at 910.210 kb on - strand, within ABZR87_RS04360 at 910.342 kb on - strand, within ABZR87_RS04360 at 910.342 kb on - strand, within ABZR87_RS04360 at 910.441 kb on - strand, within ABZR87_RS04360 at 910.441 kb on - strand, within ABZR87_RS04360 at 910.497 kb on + strand, within ABZR87_RS04360 at 910.497 kb on + strand, within ABZR87_RS04360 at 910.497 kb on + strand, within ABZR87_RS04360 at 910.497 kb on + strand, within ABZR87_RS04360 at 910.497 kb on + strand, within ABZR87_RS04360 at 910.497 kb on + strand, within ABZR87_RS04360 at 910.497 kb on + strand, within ABZR87_RS04360 at 910.497 kb on + strand, within ABZR87_RS04360 at 910.498 kb on - strand, within ABZR87_RS04360 at 910.498 kb on - strand, within ABZR87_RS04360 at 910.498 kb on - strand, within ABZR87_RS04360 at 910.498 kb on - strand, within ABZR87_RS04360 at 910.498 kb on - strand, within ABZR87_RS04360 at 910.498 kb on - strand, within ABZR87_RS04360 at 910.498 kb on - strand, within ABZR87_RS04360 at 910.819 kb on + strand at 910.819 kb on + strand at 910.819 kb on + strand at 910.819 kb on + strand at 910.820 kb on - strand at 910.820 kb on - strand at 910.820 kb on - strand at 910.820 kb on - strand at 910.823 kb on + strand at 910.824 kb on - strand at 910.824 kb on - strand at 910.833 kb on + strand at 910.834 kb on - strand at 910.834 kb on - strand at 910.834 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 907,766 - ABZR87_RS04350 0.56 +0.1 907,766 - ABZR87_RS04350 0.56 -0.3 907,866 + ABZR87_RS04350 0.64 -0.7 907,867 - ABZR87_RS04350 0.64 -1.0 907,867 - ABZR87_RS04350 0.64 +0.6 907,914 - ABZR87_RS04350 0.68 -0.7 908,039 + ABZR87_RS04350 0.78 +0.0 908,040 - ABZR87_RS04350 0.78 -0.3 908,237 + +0.0 908,237 + +0.1 908,237 + -0.5 908,237 + -1.7 908,237 + +0.5 908,237 + +1.2 908,237 + +0.6 908,238 - -0.2 908,238 - -1.2 908,238 - -0.1 908,238 - +2.2 908,238 - +0.5 908,243 + +0.0 908,243 + -0.4 908,243 + +0.0 908,243 + +0.5 908,244 - -0.2 908,244 - +1.4 908,244 - -3.0 908,297 + -0.6 908,348 + -0.5 908,383 + -0.2 908,383 + -0.1 908,384 - +1.1 908,384 - +0.4 908,766 + ABZR87_RS04355 0.23 +0.5 908,767 - ABZR87_RS04355 0.23 +0.9 908,767 - ABZR87_RS04355 0.23 -0.2 908,767 - ABZR87_RS04355 0.23 +1.0 908,767 - ABZR87_RS04355 0.23 +0.2 908,767 - ABZR87_RS04355 0.23 -0.5 908,853 + ABZR87_RS04355 0.29 -0.5 908,853 + ABZR87_RS04355 0.29 -0.3 908,854 - ABZR87_RS04355 0.29 -0.1 908,854 - ABZR87_RS04355 0.29 -0.4 908,854 - ABZR87_RS04355 0.29 +0.6 909,300 - ABZR87_RS04355 0.61 +1.1 909,300 - ABZR87_RS04355 0.61 +0.3 909,300 - ABZR87_RS04355 0.61 -0.9 909,387 + ABZR87_RS04355 0.67 +0.3 909,405 + ABZR87_RS04355 0.68 +0.3 909,405 + ABZR87_RS04355 0.68 -0.7 909,405 + ABZR87_RS04355 0.68 +0.5 909,405 + ABZR87_RS04355 0.68 -1.1 909,406 - ABZR87_RS04355 0.68 +0.4 909,411 + ABZR87_RS04355 0.69 +0.0 909,411 + ABZR87_RS04355 0.69 +0.6 909,703 - ABZR87_RS04355 0.90 -0.5 909,703 - ABZR87_RS04355 0.90 -0.5 909,703 - ABZR87_RS04355 0.90 -0.5 909,720 + -0.3 909,721 - -0.1 909,846 + +0.5 909,846 + +0.5 909,847 - -0.2 909,847 - -1.0 909,847 - -0.6 909,847 - +0.1 909,847 - -0.3 909,859 + -0.4 909,885 - -0.4 909,885 - -0.1 909,885 - -0.7 909,918 + +0.2 909,918 + +0.4 909,918 + -0.2 909,990 + -1.0 909,991 - +0.3 910,020 + ABZR87_RS04360 0.13 +0.6 910,020 + ABZR87_RS04360 0.13 +0.4 910,020 + ABZR87_RS04360 0.13 +0.2 910,021 - ABZR87_RS04360 0.13 -1.4 910,021 - ABZR87_RS04360 0.13 -0.4 910,021 - ABZR87_RS04360 0.13 -0.2 910,050 + ABZR87_RS04360 0.16 +0.2 910,050 + ABZR87_RS04360 0.16 -0.6 910,161 + ABZR87_RS04360 0.29 +0.9 910,161 + ABZR87_RS04360 0.29 -0.2 910,210 - ABZR87_RS04360 0.35 -0.4 910,342 - ABZR87_RS04360 0.50 -0.2 910,342 - ABZR87_RS04360 0.50 -0.2 910,441 - ABZR87_RS04360 0.62 +0.2 910,441 - ABZR87_RS04360 0.62 +0.3 910,497 + ABZR87_RS04360 0.69 -0.6 910,497 + ABZR87_RS04360 0.69 -0.7 910,497 + ABZR87_RS04360 0.69 -0.1 910,497 + ABZR87_RS04360 0.69 +0.4 910,497 + ABZR87_RS04360 0.69 -2.2 910,497 + ABZR87_RS04360 0.69 -1.2 910,497 + ABZR87_RS04360 0.69 -0.7 910,497 + ABZR87_RS04360 0.69 -0.4 910,498 - ABZR87_RS04360 0.69 -0.1 910,498 - ABZR87_RS04360 0.69 -0.5 910,498 - ABZR87_RS04360 0.69 -1.0 910,498 - ABZR87_RS04360 0.69 +1.6 910,498 - ABZR87_RS04360 0.69 -1.6 910,498 - ABZR87_RS04360 0.69 +0.4 910,498 - ABZR87_RS04360 0.69 -1.3 910,819 + -0.9 910,819 + +0.0 910,819 + -0.2 910,819 + +0.4 910,820 - -1.4 910,820 - +0.7 910,820 - -0.5 910,820 - +1.1 910,823 + +2.7 910,824 - -1.3 910,824 - -1.3 910,833 + -0.1 910,834 - +0.4 910,834 - -0.3 910,834 - +0.1
Or see this region's nucleotide sequence