Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03100

Experiment: Acanthamoeba sp., muxed culture-1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS03095 and ABZR87_RS03100 are separated by 3 nucleotidesABZR87_RS03100 and ABZR87_RS03105 are separated by 202 nucleotides ABZR87_RS03095: ABZR87_RS03095 - ATP-binding protein, at 651,423 to 652,763 _RS03095 ABZR87_RS03100: ABZR87_RS03100 - response regulator transcription factor, at 652,767 to 653,498 _RS03100 ABZR87_RS03105: ABZR87_RS03105 - MipA/OmpV family protein, at 653,701 to 654,498 _RS03105 Position (kb) 652 653 654Strain fitness (log2 ratio) -2 -1 0 1 2at 652.195 kb on + strand, within ABZR87_RS03095at 652.195 kb on + strand, within ABZR87_RS03095at 652.196 kb on - strand, within ABZR87_RS03095at 652.196 kb on - strand, within ABZR87_RS03095at 652.196 kb on - strand, within ABZR87_RS03095at 652.196 kb on - strand, within ABZR87_RS03095at 652.345 kb on + strand, within ABZR87_RS03095at 652.345 kb on + strand, within ABZR87_RS03095at 652.345 kb on + strand, within ABZR87_RS03095at 652.345 kb on + strand, within ABZR87_RS03095at 652.346 kb on - strand, within ABZR87_RS03095at 652.346 kb on - strand, within ABZR87_RS03095at 652.369 kb on + strand, within ABZR87_RS03095at 652.369 kb on + strand, within ABZR87_RS03095at 652.370 kb on - strand, within ABZR87_RS03095at 652.370 kb on - strand, within ABZR87_RS03095at 652.376 kb on + strand, within ABZR87_RS03095at 652.377 kb on - strand, within ABZR87_RS03095at 652.387 kb on + strand, within ABZR87_RS03095at 652.387 kb on + strand, within ABZR87_RS03095at 652.387 kb on + strand, within ABZR87_RS03095at 652.387 kb on + strand, within ABZR87_RS03095at 652.388 kb on - strand, within ABZR87_RS03095at 652.388 kb on - strand, within ABZR87_RS03095at 652.388 kb on - strand, within ABZR87_RS03095at 652.388 kb on - strand, within ABZR87_RS03095at 652.388 kb on - strand, within ABZR87_RS03095at 652.423 kb on + strand, within ABZR87_RS03095at 652.423 kb on + strand, within ABZR87_RS03095at 652.423 kb on + strand, within ABZR87_RS03095at 652.423 kb on + strand, within ABZR87_RS03095at 652.423 kb on + strand, within ABZR87_RS03095at 652.424 kb on - strand, within ABZR87_RS03095at 652.424 kb on - strand, within ABZR87_RS03095at 652.424 kb on - strand, within ABZR87_RS03095at 652.424 kb on - strand, within ABZR87_RS03095at 652.424 kb on - strand, within ABZR87_RS03095at 652.424 kb on - strand, within ABZR87_RS03095at 652.426 kb on + strand, within ABZR87_RS03095at 652.426 kb on + strand, within ABZR87_RS03095at 652.426 kb on + strand, within ABZR87_RS03095at 652.426 kb on + strand, within ABZR87_RS03095at 652.426 kb on + strand, within ABZR87_RS03095at 652.427 kb on - strand, within ABZR87_RS03095at 652.427 kb on - strand, within ABZR87_RS03095at 652.427 kb on - strand, within ABZR87_RS03095at 652.427 kb on - strand, within ABZR87_RS03095at 652.427 kb on - strand, within ABZR87_RS03095at 652.427 kb on - strand, within ABZR87_RS03095at 652.427 kb on - strand, within ABZR87_RS03095at 652.606 kb on + strand, within ABZR87_RS03095at 652.606 kb on + strand, within ABZR87_RS03095at 652.606 kb on + strand, within ABZR87_RS03095at 652.606 kb on + strand, within ABZR87_RS03095at 652.606 kb on + strand, within ABZR87_RS03095at 652.614 kb on + strand, within ABZR87_RS03095at 652.614 kb on + strand, within ABZR87_RS03095at 652.615 kb on - strand, within ABZR87_RS03095at 652.627 kb on + strand, within ABZR87_RS03095at 652.627 kb on + strand, within ABZR87_RS03095at 652.738 kb on + strandat 652.738 kb on + strandat 652.738 kb on + strandat 652.739 kb on - strandat 652.739 kb on - strandat 652.798 kb on + strandat 652.799 kb on - strandat 653.188 kb on + strand, within ABZR87_RS03100at 653.189 kb on - strand, within ABZR87_RS03100at 653.189 kb on - strand, within ABZR87_RS03100at 653.189 kb on - strand, within ABZR87_RS03100at 653.227 kb on + strand, within ABZR87_RS03100at 653.227 kb on + strand, within ABZR87_RS03100at 653.227 kb on + strand, within ABZR87_RS03100at 653.227 kb on + strand, within ABZR87_RS03100at 653.227 kb on + strand, within ABZR87_RS03100at 653.227 kb on + strand, within ABZR87_RS03100at 653.227 kb on + strand, within ABZR87_RS03100at 653.228 kb on - strand, within ABZR87_RS03100at 653.228 kb on - strand, within ABZR87_RS03100at 653.410 kb on + strand, within ABZR87_RS03100at 653.410 kb on + strand, within ABZR87_RS03100at 653.410 kb on + strand, within ABZR87_RS03100at 653.411 kb on - strand, within ABZR87_RS03100at 653.411 kb on - strand, within ABZR87_RS03100at 653.411 kb on - strand, within ABZR87_RS03100at 653.411 kb on - strand, within ABZR87_RS03100at 653.411 kb on - strand, within ABZR87_RS03100at 653.411 kb on - strand, within ABZR87_RS03100at 653.422 kb on + strand, within ABZR87_RS03100at 653.422 kb on + strand, within ABZR87_RS03100at 653.422 kb on + strand, within ABZR87_RS03100at 653.547 kb on + strandat 653.547 kb on + strandat 653.548 kb on - strandat 653.548 kb on - strandat 653.698 kb on + strandat 653.698 kb on + strandat 653.698 kb on + strandat 653.698 kb on + strandat 653.698 kb on + strandat 653.698 kb on + strandat 653.698 kb on + strandat 653.698 kb on + strandat 653.699 kb on - strandat 653.699 kb on - strandat 653.699 kb on - strandat 653.699 kb on - strandat 653.699 kb on - strandat 653.699 kb on - strandat 653.699 kb on - strandat 653.737 kb on + strandat 653.737 kb on + strandat 653.738 kb on - strandat 653.738 kb on - strandat 653.738 kb on - strandat 653.782 kb on + strand, within ABZR87_RS03105at 653.782 kb on + strand, within ABZR87_RS03105at 653.782 kb on + strand, within ABZR87_RS03105at 653.782 kb on + strand, within ABZR87_RS03105at 653.783 kb on - strand, within ABZR87_RS03105at 653.783 kb on - strand, within ABZR87_RS03105at 653.783 kb on - strand, within ABZR87_RS03105at 653.783 kb on - strand, within ABZR87_RS03105at 653.800 kb on + strand, within ABZR87_RS03105at 653.801 kb on - strand, within ABZR87_RS03105at 653.801 kb on - strand, within ABZR87_RS03105at 653.854 kb on + strand, within ABZR87_RS03105at 653.854 kb on + strand, within ABZR87_RS03105at 653.854 kb on + strand, within ABZR87_RS03105at 653.854 kb on + strand, within ABZR87_RS03105at 653.854 kb on + strand, within ABZR87_RS03105at 653.936 kb on - strand, within ABZR87_RS03105at 653.936 kb on - strand, within ABZR87_RS03105at 653.983 kb on + strand, within ABZR87_RS03105at 653.983 kb on + strand, within ABZR87_RS03105at 653.984 kb on - strand, within ABZR87_RS03105at 653.984 kb on - strand, within ABZR87_RS03105at 654.013 kb on + strand, within ABZR87_RS03105at 654.253 kb on + strand, within ABZR87_RS03105at 654.253 kb on + strand, within ABZR87_RS03105at 654.253 kb on + strand, within ABZR87_RS03105at 654.253 kb on + strand, within ABZR87_RS03105at 654.253 kb on + strand, within ABZR87_RS03105at 654.253 kb on + strand, within ABZR87_RS03105at 654.253 kb on + strand, within ABZR87_RS03105at 654.253 kb on + strand, within ABZR87_RS03105at 654.253 kb on + strand, within ABZR87_RS03105at 654.253 kb on + strand, within ABZR87_RS03105at 654.254 kb on - strand, within ABZR87_RS03105at 654.254 kb on - strand, within ABZR87_RS03105at 654.254 kb on - strand, within ABZR87_RS03105at 654.265 kb on + strand, within ABZR87_RS03105at 654.265 kb on + strand, within ABZR87_RS03105at 654.266 kb on - strand, within ABZR87_RS03105at 654.266 kb on - strand, within ABZR87_RS03105at 654.266 kb on - strand, within ABZR87_RS03105at 654.266 kb on - strand, within ABZR87_RS03105at 654.313 kb on + strand, within ABZR87_RS03105at 654.314 kb on - strand, within ABZR87_RS03105at 654.366 kb on + strand, within ABZR87_RS03105at 654.366 kb on + strand, within ABZR87_RS03105at 654.366 kb on + strand, within ABZR87_RS03105at 654.366 kb on + strand, within ABZR87_RS03105at 654.366 kb on + strand, within ABZR87_RS03105at 654.367 kb on - strand, within ABZR87_RS03105at 654.367 kb on - strand, within ABZR87_RS03105at 654.367 kb on - strand, within ABZR87_RS03105at 654.367 kb on - strand, within ABZR87_RS03105at 654.367 kb on - strand, within ABZR87_RS03105at 654.367 kb on - strand, within ABZR87_RS03105at 654.367 kb on - strand, within ABZR87_RS03105at 654.463 kb on + strandat 654.463 kb on + strandat 654.463 kb on + strandat 654.463 kb on + strandat 654.463 kb on + strandat 654.463 kb on + strandat 654.464 kb on - strandat 654.464 kb on - strandat 654.464 kb on - strandat 654.464 kb on - strandat 654.464 kb on - strandat 654.464 kb on - strandat 654.487 kb on + strandat 654.488 kb on - strandat 654.488 kb on - strandat 654.488 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
remove
652,195 + ABZR87_RS03095 0.58 +0.1
652,195 + ABZR87_RS03095 0.58 -0.7
652,196 - ABZR87_RS03095 0.58 +0.3
652,196 - ABZR87_RS03095 0.58 -1.2
652,196 - ABZR87_RS03095 0.58 +0.2
652,196 - ABZR87_RS03095 0.58 -0.8
652,345 + ABZR87_RS03095 0.69 -0.3
652,345 + ABZR87_RS03095 0.69 +0.3
652,345 + ABZR87_RS03095 0.69 +1.2
652,345 + ABZR87_RS03095 0.69 +0.0
652,346 - ABZR87_RS03095 0.69 +0.5
652,346 - ABZR87_RS03095 0.69 -0.2
652,369 + ABZR87_RS03095 0.71 -0.9
652,369 + ABZR87_RS03095 0.71 -0.7
652,370 - ABZR87_RS03095 0.71 -0.1
652,370 - ABZR87_RS03095 0.71 +0.3
652,376 + ABZR87_RS03095 0.71 +0.3
652,377 - ABZR87_RS03095 0.71 +0.9
652,387 + ABZR87_RS03095 0.72 -0.5
652,387 + ABZR87_RS03095 0.72 -0.2
652,387 + ABZR87_RS03095 0.72 -1.1
652,387 + ABZR87_RS03095 0.72 -1.0
652,388 - ABZR87_RS03095 0.72 +0.7
652,388 - ABZR87_RS03095 0.72 +0.3
652,388 - ABZR87_RS03095 0.72 -0.9
652,388 - ABZR87_RS03095 0.72 -0.3
652,388 - ABZR87_RS03095 0.72 +1.5
652,423 + ABZR87_RS03095 0.75 +0.1
652,423 + ABZR87_RS03095 0.75 +0.6
652,423 + ABZR87_RS03095 0.75 -0.8
652,423 + ABZR87_RS03095 0.75 -1.7
652,423 + ABZR87_RS03095 0.75 -0.2
652,424 - ABZR87_RS03095 0.75 +0.5
652,424 - ABZR87_RS03095 0.75 -0.1
652,424 - ABZR87_RS03095 0.75 -0.1
652,424 - ABZR87_RS03095 0.75 +1.7
652,424 - ABZR87_RS03095 0.75 -0.2
652,424 - ABZR87_RS03095 0.75 -0.7
652,426 + ABZR87_RS03095 0.75 +0.3
652,426 + ABZR87_RS03095 0.75 -1.2
652,426 + ABZR87_RS03095 0.75 +0.0
652,426 + ABZR87_RS03095 0.75 +0.4
652,426 + ABZR87_RS03095 0.75 -0.0
652,427 - ABZR87_RS03095 0.75 +0.0
652,427 - ABZR87_RS03095 0.75 -0.0
652,427 - ABZR87_RS03095 0.75 +0.5
652,427 - ABZR87_RS03095 0.75 +1.0
652,427 - ABZR87_RS03095 0.75 +0.5
652,427 - ABZR87_RS03095 0.75 +0.2
652,427 - ABZR87_RS03095 0.75 +0.1
652,606 + ABZR87_RS03095 0.88 -0.3
652,606 + ABZR87_RS03095 0.88 +0.1
652,606 + ABZR87_RS03095 0.88 +1.0
652,606 + ABZR87_RS03095 0.88 +1.1
652,606 + ABZR87_RS03095 0.88 -0.0
652,614 + ABZR87_RS03095 0.89 +0.1
652,614 + ABZR87_RS03095 0.89 +0.1
652,615 - ABZR87_RS03095 0.89 +0.0
652,627 + ABZR87_RS03095 0.90 -2.5
652,627 + ABZR87_RS03095 0.90 -1.1
652,738 + -0.2
652,738 + -0.7
652,738 + -0.6
652,739 - -0.2
652,739 - -0.6
652,798 + -0.8
652,799 - +0.5
653,188 + ABZR87_RS03100 0.58 -0.4
653,189 - ABZR87_RS03100 0.58 -0.3
653,189 - ABZR87_RS03100 0.58 +0.3
653,189 - ABZR87_RS03100 0.58 -1.0
653,227 + ABZR87_RS03100 0.63 +0.4
653,227 + ABZR87_RS03100 0.63 +0.1
653,227 + ABZR87_RS03100 0.63 -0.2
653,227 + ABZR87_RS03100 0.63 +0.3
653,227 + ABZR87_RS03100 0.63 +0.8
653,227 + ABZR87_RS03100 0.63 +0.1
653,227 + ABZR87_RS03100 0.63 +0.2
653,228 - ABZR87_RS03100 0.63 -0.3
653,228 - ABZR87_RS03100 0.63 -0.1
653,410 + ABZR87_RS03100 0.88 +0.6
653,410 + ABZR87_RS03100 0.88 -0.7
653,410 + ABZR87_RS03100 0.88 +0.4
653,411 - ABZR87_RS03100 0.88 +0.8
653,411 - ABZR87_RS03100 0.88 -0.3
653,411 - ABZR87_RS03100 0.88 +0.4
653,411 - ABZR87_RS03100 0.88 +1.2
653,411 - ABZR87_RS03100 0.88 +0.1
653,411 - ABZR87_RS03100 0.88 -2.1
653,422 + ABZR87_RS03100 0.89 -1.1
653,422 + ABZR87_RS03100 0.89 +0.8
653,422 + ABZR87_RS03100 0.89 +0.6
653,547 + -1.7
653,547 + -0.0
653,548 - -0.9
653,548 - +0.1
653,698 + -0.3
653,698 + -0.1
653,698 + -0.4
653,698 + -0.1
653,698 + +0.6
653,698 + +1.0
653,698 + +0.2
653,698 + +0.5
653,699 - +0.4
653,699 - +0.8
653,699 - +0.0
653,699 - -0.0
653,699 - +0.2
653,699 - -1.3
653,699 - -0.5
653,737 + +0.0
653,737 + +0.2
653,738 - -0.2
653,738 - +0.2
653,738 - +0.2
653,782 + ABZR87_RS03105 0.10 -0.6
653,782 + ABZR87_RS03105 0.10 +0.3
653,782 + ABZR87_RS03105 0.10 +0.1
653,782 + ABZR87_RS03105 0.10 +0.4
653,783 - ABZR87_RS03105 0.10 +0.7
653,783 - ABZR87_RS03105 0.10 +0.1
653,783 - ABZR87_RS03105 0.10 -0.3
653,783 - ABZR87_RS03105 0.10 +0.1
653,800 + ABZR87_RS03105 0.12 +0.4
653,801 - ABZR87_RS03105 0.13 -0.3
653,801 - ABZR87_RS03105 0.13 -1.4
653,854 + ABZR87_RS03105 0.19 -0.1
653,854 + ABZR87_RS03105 0.19 +0.2
653,854 + ABZR87_RS03105 0.19 -0.0
653,854 + ABZR87_RS03105 0.19 +1.0
653,854 + ABZR87_RS03105 0.19 +0.1
653,936 - ABZR87_RS03105 0.29 -0.6
653,936 - ABZR87_RS03105 0.29 -0.1
653,983 + ABZR87_RS03105 0.35 +0.0
653,983 + ABZR87_RS03105 0.35 -2.2
653,984 - ABZR87_RS03105 0.35 +0.1
653,984 - ABZR87_RS03105 0.35 +1.4
654,013 + ABZR87_RS03105 0.39 -1.9
654,253 + ABZR87_RS03105 0.69 -0.3
654,253 + ABZR87_RS03105 0.69 -0.2
654,253 + ABZR87_RS03105 0.69 +0.3
654,253 + ABZR87_RS03105 0.69 -0.8
654,253 + ABZR87_RS03105 0.69 -0.3
654,253 + ABZR87_RS03105 0.69 +0.5
654,253 + ABZR87_RS03105 0.69 +0.8
654,253 + ABZR87_RS03105 0.69 -2.5
654,253 + ABZR87_RS03105 0.69 -0.3
654,253 + ABZR87_RS03105 0.69 -0.5
654,254 - ABZR87_RS03105 0.69 -0.7
654,254 - ABZR87_RS03105 0.69 -0.7
654,254 - ABZR87_RS03105 0.69 +0.6
654,265 + ABZR87_RS03105 0.71 +0.5
654,265 + ABZR87_RS03105 0.71 +0.4
654,266 - ABZR87_RS03105 0.71 -0.5
654,266 - ABZR87_RS03105 0.71 +0.3
654,266 - ABZR87_RS03105 0.71 -1.9
654,266 - ABZR87_RS03105 0.71 +0.1
654,313 + ABZR87_RS03105 0.77 +0.2
654,314 - ABZR87_RS03105 0.77 -0.1
654,366 + ABZR87_RS03105 0.83 +2.3
654,366 + ABZR87_RS03105 0.83 +0.9
654,366 + ABZR87_RS03105 0.83 -1.0
654,366 + ABZR87_RS03105 0.83 -0.1
654,366 + ABZR87_RS03105 0.83 -0.3
654,367 - ABZR87_RS03105 0.83 +1.7
654,367 - ABZR87_RS03105 0.83 +1.4
654,367 - ABZR87_RS03105 0.83 -1.1
654,367 - ABZR87_RS03105 0.83 -0.1
654,367 - ABZR87_RS03105 0.83 +0.6
654,367 - ABZR87_RS03105 0.83 -0.8
654,367 - ABZR87_RS03105 0.83 -1.1
654,463 + -0.1
654,463 + +1.2
654,463 + -0.5
654,463 + -0.1
654,463 + +0.3
654,463 + -0.1
654,464 - -0.9
654,464 - +0.3
654,464 - +0.0
654,464 - -1.8
654,464 - -0.2
654,464 - +0.1
654,487 + +0.3
654,488 - -0.7
654,488 - +1.4
654,488 - -0.4

Or see this region's nucleotide sequence