Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00620 and ABZR87_RS00625 are separated by 167 nucleotides ABZR87_RS00625 and ABZR87_RS00630 are separated by 67 nucleotides
ABZR87_RS00620: ABZR87_RS00620 - sulfite exporter TauE/SafE family protein, at 128,513 to 129,280
_RS00620
ABZR87_RS00625: ABZR87_RS00625 - hypothetical protein, at 129,448 to 129,897
_RS00625
ABZR87_RS00630: ABZR87_RS00630 - GntP family permease, at 129,965 to 131,365
_RS00630
Position (kb) 129
130 Strain fitness (log2 ratio) -2
-1
0
1 at 128.473 kb on + strand at 128.473 kb on + strand at 128.512 kb on + strand at 128.805 kb on + strand, within ABZR87_RS00620 at 128.806 kb on - strand, within ABZR87_RS00620 at 128.808 kb on + strand, within ABZR87_RS00620 at 128.808 kb on + strand, within ABZR87_RS00620 at 128.809 kb on - strand, within ABZR87_RS00620 at 128.852 kb on + strand, within ABZR87_RS00620 at 128.852 kb on + strand, within ABZR87_RS00620 at 128.853 kb on - strand, within ABZR87_RS00620 at 128.853 kb on - strand, within ABZR87_RS00620 at 128.981 kb on + strand, within ABZR87_RS00620 at 128.982 kb on - strand, within ABZR87_RS00620 at 129.339 kb on + strand at 129.339 kb on + strand at 129.340 kb on - strand at 129.365 kb on + strand at 129.366 kb on - strand at 129.366 kb on - strand at 129.631 kb on + strand, within ABZR87_RS00625 at 129.984 kb on + strand at 129.984 kb on + strand at 129.984 kb on + strand at 129.984 kb on + strand at 129.984 kb on + strand at 129.984 kb on + strand at 129.985 kb on - strand at 129.985 kb on - strand at 129.985 kb on - strand at 129.985 kb on - strand at 129.985 kb on - strand at 129.985 kb on - strand at 129.985 kb on - strand at 130.050 kb on + strand at 130.371 kb on + strand, within ABZR87_RS00630 at 130.372 kb on - strand, within ABZR87_RS00630 at 130.731 kb on + strand, within ABZR87_RS00630 at 130.732 kb on - strand, within ABZR87_RS00630 at 130.776 kb on + strand, within ABZR87_RS00630 at 130.816 kb on + strand, within ABZR87_RS00630 at 130.816 kb on + strand, within ABZR87_RS00630
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 128,473 + -2.1 128,473 + -1.0 128,512 + +1.5 128,805 + ABZR87_RS00620 0.38 -0.1 128,806 - ABZR87_RS00620 0.38 -0.1 128,808 + ABZR87_RS00620 0.38 +0.4 128,808 + ABZR87_RS00620 0.38 -0.1 128,809 - ABZR87_RS00620 0.39 -0.3 128,852 + ABZR87_RS00620 0.44 -0.9 128,852 + ABZR87_RS00620 0.44 +0.0 128,853 - ABZR87_RS00620 0.44 +1.1 128,853 - ABZR87_RS00620 0.44 -0.5 128,981 + ABZR87_RS00620 0.61 -0.0 128,982 - ABZR87_RS00620 0.61 +0.9 129,339 + -0.3 129,339 + +0.1 129,340 - -0.4 129,365 + +0.3 129,366 - -0.5 129,366 - -0.6 129,631 + ABZR87_RS00625 0.41 -1.0 129,984 + -1.4 129,984 + +0.2 129,984 + -0.1 129,984 + +0.2 129,984 + +0.3 129,984 + -0.0 129,985 - -0.6 129,985 - -0.3 129,985 - +0.1 129,985 - +0.8 129,985 - -1.1 129,985 - -0.1 129,985 - +0.5 130,050 + +0.3 130,371 + ABZR87_RS00630 0.29 +0.6 130,372 - ABZR87_RS00630 0.29 -1.9 130,731 + ABZR87_RS00630 0.55 -0.0 130,732 - ABZR87_RS00630 0.55 -0.4 130,776 + ABZR87_RS00630 0.58 +0.8 130,816 + ABZR87_RS00630 0.61 +0.1 130,816 + ABZR87_RS00630 0.61 -0.1
Or see this region's nucleotide sequence