Experiment: MoLS4 with Pantothenic with Casamino acids (vit. assay) 0.05%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DORF28817 and DVU0560 are separated by 172 nucleotides DVU0560 and DVU0561 are separated by 37 nucleotides DVU0561 and DVU0562 are separated by 112 nucleotides DVU0562 and DVU0563 are separated by 20 nucleotides
DORF28817: DORF28817 - no description, at 625,793 to 626,467
DORF28817
DVU0560: DVU0560 - conserved domain protein (TIGR), at 626,640 to 627,134
DVU0560
DVU0561: DVU0561 - glycosyl transferase, group 1 family protein (TIGR), at 627,172 to 628,275
DVU0561
DVU0562: DVU0562 - ISD1, transposase OrfA (TIGR), at 628,388 to 628,654
DVU0562
DVU0563: DVU0563 - ISD1, transposase OrfB (TIGR), at 628,675 to 629,499
DVU0563
Position (kb) 627
628
629 Strain fitness (log2 ratio) -2
-1
0
1 at 626.264 kb on + strand, within DORF28817 at 626.312 kb on + strand, within DORF28817 at 627.814 kb on - strand, within DVU0561 at 627.867 kb on + strand, within DVU0561 at 627.914 kb on - strand, within DVU0561 at 628.011 kb on + strand, within DVU0561 at 628.115 kb on + strand, within DVU0561 at 628.123 kb on - strand, within DVU0561 at 628.170 kb on + strand at 628.193 kb on + strand at 628.305 kb on + strand at 628.334 kb on - strand at 629.048 kb on + strand, within DVU0563
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Pantothenic with Casamino acids (vit. assay) 0.05% remove 626,264 + DORF28817 0.70 -0.3 626,312 + DORF28817 0.77 -0.3 627,814 - DVU0561 0.58 +0.5 627,867 + DVU0561 0.63 -0.0 627,914 - DVU0561 0.67 -0.8 628,011 + DVU0561 0.76 +0.5 628,115 + DVU0561 0.85 -0.7 628,123 - DVU0561 0.86 -2.7 628,170 + -0.1 628,193 + -1.5 628,305 + -0.8 628,334 - +0.7 629,048 + DVU0563 0.45 +0.5
Or see this region's nucleotide sequence