Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22740 and ABZR87_RS22745 are separated by 16 nucleotides ABZR87_RS22745 and ABZR87_RS22750 are separated by 46 nucleotides ABZR87_RS22750 and ABZR87_RS22755 overlap by 20 nucleotides
ABZR87_RS22740: ABZR87_RS22740 - MFS transporter, at 1,460,657 to 1,462,018
_RS22740
ABZR87_RS22745: ABZR87_RS22745 - MBL fold metallo-hydrolase, at 1,462,035 to 1,462,928
_RS22745
ABZR87_RS22750: ABZR87_RS22750 - response regulator transcription factor, at 1,462,975 to 1,463,961
_RS22750
ABZR87_RS22755: ABZR87_RS22755 - ATP-binding protein, at 1,463,942 to 1,467,340
_RS22755
Position (kb) 1462
1463
1464 Strain fitness (log2 ratio) -1
0
1
2 at 1461.975 kb on - strand at 1461.975 kb on - strand at 1461.975 kb on - strand at 1461.975 kb on - strand at 1461.975 kb on - strand at 1462.383 kb on + strand, within ABZR87_RS22745 at 1462.383 kb on + strand, within ABZR87_RS22745 at 1462.383 kb on + strand, within ABZR87_RS22745 at 1462.383 kb on + strand, within ABZR87_RS22745 at 1462.384 kb on - strand, within ABZR87_RS22745 at 1462.384 kb on - strand, within ABZR87_RS22745 at 1462.384 kb on - strand, within ABZR87_RS22745 at 1462.384 kb on - strand, within ABZR87_RS22745 at 1462.384 kb on - strand, within ABZR87_RS22745 at 1462.384 kb on - strand, within ABZR87_RS22745 at 1462.384 kb on - strand, within ABZR87_RS22745 at 1462.476 kb on + strand, within ABZR87_RS22745 at 1462.476 kb on + strand, within ABZR87_RS22745 at 1462.476 kb on + strand, within ABZR87_RS22745 at 1462.476 kb on + strand, within ABZR87_RS22745 at 1462.476 kb on + strand, within ABZR87_RS22745 at 1462.476 kb on + strand, within ABZR87_RS22745 at 1462.476 kb on + strand, within ABZR87_RS22745 at 1462.477 kb on - strand, within ABZR87_RS22745 at 1462.477 kb on - strand, within ABZR87_RS22745 at 1462.477 kb on - strand, within ABZR87_RS22745 at 1462.477 kb on - strand, within ABZR87_RS22745 at 1462.662 kb on - strand, within ABZR87_RS22745 at 1462.662 kb on - strand, within ABZR87_RS22745 at 1462.662 kb on - strand, within ABZR87_RS22745 at 1462.737 kb on + strand, within ABZR87_RS22745 at 1462.737 kb on + strand, within ABZR87_RS22745 at 1462.737 kb on + strand, within ABZR87_RS22745 at 1462.908 kb on + strand at 1462.908 kb on + strand at 1462.932 kb on + strand at 1463.351 kb on - strand, within ABZR87_RS22750 at 1463.848 kb on - strand, within ABZR87_RS22750 at 1463.986 kb on + strand at 1464.103 kb on - strand at 1464.276 kb on + strand at 1464.276 kb on + strand at 1464.277 kb on - strand at 1464.277 kb on - strand at 1464.529 kb on + strand, within ABZR87_RS22755 at 1464.656 kb on - strand, within ABZR87_RS22755 at 1464.656 kb on - strand, within ABZR87_RS22755 at 1464.664 kb on + strand, within ABZR87_RS22755 at 1464.665 kb on - strand, within ABZR87_RS22755 at 1464.870 kb on + strand, within ABZR87_RS22755 at 1464.871 kb on - strand, within ABZR87_RS22755
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 1,461,975 - -1.1 1,461,975 - -0.4 1,461,975 - +0.6 1,461,975 - -1.2 1,461,975 - +1.3 1,462,383 + ABZR87_RS22745 0.39 +0.4 1,462,383 + ABZR87_RS22745 0.39 -1.3 1,462,383 + ABZR87_RS22745 0.39 +0.0 1,462,383 + ABZR87_RS22745 0.39 -0.5 1,462,384 - ABZR87_RS22745 0.39 +0.3 1,462,384 - ABZR87_RS22745 0.39 +0.2 1,462,384 - ABZR87_RS22745 0.39 -1.3 1,462,384 - ABZR87_RS22745 0.39 -0.6 1,462,384 - ABZR87_RS22745 0.39 +1.2 1,462,384 - ABZR87_RS22745 0.39 -0.9 1,462,384 - ABZR87_RS22745 0.39 +1.2 1,462,476 + ABZR87_RS22745 0.49 -0.8 1,462,476 + ABZR87_RS22745 0.49 -0.8 1,462,476 + ABZR87_RS22745 0.49 +0.7 1,462,476 + ABZR87_RS22745 0.49 +0.0 1,462,476 + ABZR87_RS22745 0.49 -0.5 1,462,476 + ABZR87_RS22745 0.49 +0.7 1,462,476 + ABZR87_RS22745 0.49 +0.2 1,462,477 - ABZR87_RS22745 0.49 -0.2 1,462,477 - ABZR87_RS22745 0.49 +2.0 1,462,477 - ABZR87_RS22745 0.49 +0.8 1,462,477 - ABZR87_RS22745 0.49 +0.4 1,462,662 - ABZR87_RS22745 0.70 +0.3 1,462,662 - ABZR87_RS22745 0.70 +0.0 1,462,662 - ABZR87_RS22745 0.70 -0.5 1,462,737 + ABZR87_RS22745 0.79 -0.3 1,462,737 + ABZR87_RS22745 0.79 +1.6 1,462,737 + ABZR87_RS22745 0.79 -0.6 1,462,908 + -0.6 1,462,908 + +0.9 1,462,932 + -0.3 1,463,351 - ABZR87_RS22750 0.38 +0.5 1,463,848 - ABZR87_RS22750 0.88 +0.3 1,463,986 + +0.2 1,464,103 - -0.6 1,464,276 + -0.0 1,464,276 + +0.9 1,464,277 - -0.7 1,464,277 - +0.8 1,464,529 + ABZR87_RS22755 0.17 -0.2 1,464,656 - ABZR87_RS22755 0.21 +1.0 1,464,656 - ABZR87_RS22755 0.21 -0.3 1,464,664 + ABZR87_RS22755 0.21 -0.8 1,464,665 - ABZR87_RS22755 0.21 -1.0 1,464,870 + ABZR87_RS22755 0.27 +0.3 1,464,871 - ABZR87_RS22755 0.27 +0.1
Or see this region's nucleotide sequence