Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22210

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22195 and ABZR87_RS22200 overlap by 11 nucleotidesABZR87_RS22200 and ABZR87_RS22205 are separated by 68 nucleotidesABZR87_RS22205 and ABZR87_RS22210 overlap by 4 nucleotidesABZR87_RS22210 and ABZR87_RS22215 are separated by 19 nucleotidesABZR87_RS22215 and ABZR87_RS22220 are separated by 33 nucleotides ABZR87_RS22195: ABZR87_RS22195 - flagellar motor switch protein FliM, at 1,344,322 to 1,345,332 _RS22195 ABZR87_RS22200: ABZR87_RS22200 - flagellar motor switch protein FliN, at 1,345,322 to 1,345,789 _RS22200 ABZR87_RS22205: ABZR87_RS22205 - flagellar biosynthetic protein FliO, at 1,345,858 to 1,346,259 _RS22205 ABZR87_RS22210: ABZR87_RS22210 - flagellar type III secretion system pore protein FliP, at 1,346,256 to 1,347,005 _RS22210 ABZR87_RS22215: ABZR87_RS22215 - flagellar biosynthesis protein FliQ, at 1,347,025 to 1,347,294 _RS22215 ABZR87_RS22220: ABZR87_RS22220 - flagellar biosynthetic protein FliR, at 1,347,328 to 1,348,122 _RS22220 Position (kb) 1346 1347 1348Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1345.258 kb on + strandat 1345.259 kb on - strandat 1345.259 kb on - strandat 1345.287 kb on + strandat 1345.288 kb on - strandat 1345.288 kb on - strandat 1345.685 kb on + strand, within ABZR87_RS22200at 1345.768 kb on + strandat 1345.768 kb on + strandat 1345.768 kb on + strandat 1345.774 kb on + strandat 1345.800 kb on + strandat 1345.801 kb on - strandat 1345.801 kb on - strandat 1345.890 kb on - strandat 1345.890 kb on - strandat 1345.890 kb on - strandat 1345.905 kb on - strand, within ABZR87_RS22205at 1345.905 kb on - strand, within ABZR87_RS22205at 1345.905 kb on - strand, within ABZR87_RS22205at 1345.905 kb on - strand, within ABZR87_RS22205at 1345.905 kb on - strand, within ABZR87_RS22205at 1346.267 kb on + strandat 1346.267 kb on + strandat 1346.267 kb on + strandat 1346.267 kb on + strandat 1346.267 kb on + strandat 1346.267 kb on + strandat 1346.268 kb on - strandat 1346.268 kb on - strandat 1346.268 kb on - strandat 1346.268 kb on - strandat 1346.379 kb on + strand, within ABZR87_RS22210at 1346.379 kb on + strand, within ABZR87_RS22210at 1346.379 kb on + strand, within ABZR87_RS22210at 1346.380 kb on - strand, within ABZR87_RS22210at 1346.380 kb on - strand, within ABZR87_RS22210at 1346.592 kb on + strand, within ABZR87_RS22210at 1346.592 kb on + strand, within ABZR87_RS22210at 1346.592 kb on + strand, within ABZR87_RS22210at 1346.593 kb on - strand, within ABZR87_RS22210at 1346.604 kb on + strand, within ABZR87_RS22210at 1346.604 kb on + strand, within ABZR87_RS22210at 1346.604 kb on + strand, within ABZR87_RS22210at 1346.605 kb on - strand, within ABZR87_RS22210at 1347.037 kb on + strandat 1347.038 kb on - strandat 1347.283 kb on + strandat 1347.283 kb on + strandat 1347.284 kb on - strandat 1347.284 kb on - strandat 1347.284 kb on - strandat 1347.373 kb on + strandat 1347.373 kb on + strandat 1347.373 kb on + strandat 1347.373 kb on + strandat 1347.373 kb on + strandat 1347.373 kb on + strandat 1347.374 kb on - strandat 1347.374 kb on - strandat 1347.453 kb on + strand, within ABZR87_RS22220at 1347.453 kb on + strand, within ABZR87_RS22220at 1347.453 kb on + strand, within ABZR87_RS22220at 1347.453 kb on + strand, within ABZR87_RS22220at 1347.454 kb on - strand, within ABZR87_RS22220at 1347.532 kb on + strand, within ABZR87_RS22220at 1347.532 kb on + strand, within ABZR87_RS22220at 1347.532 kb on + strand, within ABZR87_RS22220at 1347.532 kb on + strand, within ABZR87_RS22220at 1347.532 kb on + strand, within ABZR87_RS22220at 1347.532 kb on + strand, within ABZR87_RS22220at 1347.533 kb on - strand, within ABZR87_RS22220at 1347.533 kb on - strand, within ABZR87_RS22220at 1347.533 kb on - strand, within ABZR87_RS22220at 1347.533 kb on - strand, within ABZR87_RS22220

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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1,345,258 + -0.4
1,345,259 - -1.4
1,345,259 - -0.6
1,345,287 + -0.0
1,345,288 - -1.0
1,345,288 - -1.9
1,345,685 + ABZR87_RS22200 0.78 -1.9
1,345,768 + +0.1
1,345,768 + -0.5
1,345,768 + +1.0
1,345,774 + +3.0
1,345,800 + -0.2
1,345,801 - -0.9
1,345,801 - -1.0
1,345,890 - +1.0
1,345,890 - -0.7
1,345,890 - +0.2
1,345,905 - ABZR87_RS22205 0.12 -0.7
1,345,905 - ABZR87_RS22205 0.12 +0.4
1,345,905 - ABZR87_RS22205 0.12 -0.2
1,345,905 - ABZR87_RS22205 0.12 -0.9
1,345,905 - ABZR87_RS22205 0.12 -0.4
1,346,267 + +0.1
1,346,267 + -0.0
1,346,267 + -0.6
1,346,267 + -2.9
1,346,267 + -0.8
1,346,267 + -0.6
1,346,268 - -0.7
1,346,268 - -0.9
1,346,268 - -1.8
1,346,268 - -1.2
1,346,379 + ABZR87_RS22210 0.16 +0.0
1,346,379 + ABZR87_RS22210 0.16 -1.1
1,346,379 + ABZR87_RS22210 0.16 -0.8
1,346,380 - ABZR87_RS22210 0.17 -0.2
1,346,380 - ABZR87_RS22210 0.17 -2.0
1,346,592 + ABZR87_RS22210 0.45 -1.3
1,346,592 + ABZR87_RS22210 0.45 -0.7
1,346,592 + ABZR87_RS22210 0.45 -0.5
1,346,593 - ABZR87_RS22210 0.45 +0.1
1,346,604 + ABZR87_RS22210 0.46 -1.0
1,346,604 + ABZR87_RS22210 0.46 -1.8
1,346,604 + ABZR87_RS22210 0.46 -0.8
1,346,605 - ABZR87_RS22210 0.47 +0.4
1,347,037 + +0.4
1,347,038 - +2.0
1,347,283 + -0.2
1,347,283 + -0.3
1,347,284 - -1.1
1,347,284 - +0.2
1,347,284 - +0.4
1,347,373 + -1.4
1,347,373 + -0.0
1,347,373 + -0.2
1,347,373 + -0.7
1,347,373 + -1.7
1,347,373 + -0.5
1,347,374 - -2.2
1,347,374 - +0.7
1,347,453 + ABZR87_RS22220 0.16 -0.4
1,347,453 + ABZR87_RS22220 0.16 -2.2
1,347,453 + ABZR87_RS22220 0.16 -0.5
1,347,453 + ABZR87_RS22220 0.16 -2.4
1,347,454 - ABZR87_RS22220 0.16 -0.7
1,347,532 + ABZR87_RS22220 0.26 -1.4
1,347,532 + ABZR87_RS22220 0.26 -0.5
1,347,532 + ABZR87_RS22220 0.26 -0.9
1,347,532 + ABZR87_RS22220 0.26 -2.4
1,347,532 + ABZR87_RS22220 0.26 -0.4
1,347,532 + ABZR87_RS22220 0.26 +0.1
1,347,533 - ABZR87_RS22220 0.26 -2.5
1,347,533 - ABZR87_RS22220 0.26 -0.6
1,347,533 - ABZR87_RS22220 0.26 -0.0
1,347,533 - ABZR87_RS22220 0.26 +0.2

Or see this region's nucleotide sequence