Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22185 and ABZR87_RS22190 are separated by 513 nucleotides ABZR87_RS22190 and ABZR87_RS22195 are separated by 1 nucleotides
ABZR87_RS22185: ABZR87_RS22185 - EAL domain-containing protein, at 1,341,573 to 1,343,309
_RS22185
ABZR87_RS22190: ABZR87_RS22190 - flagellar basal body-associated protein FliL, at 1,343,823 to 1,344,320
_RS22190
ABZR87_RS22195: ABZR87_RS22195 - flagellar motor switch protein FliM, at 1,344,322 to 1,345,332
_RS22195
Position (kb) 1343
1344
1345 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1342.954 kb on + strand, within ABZR87_RS22185 at 1343.017 kb on + strand, within ABZR87_RS22185 at 1343.017 kb on + strand, within ABZR87_RS22185 at 1343.017 kb on + strand, within ABZR87_RS22185 at 1343.017 kb on + strand, within ABZR87_RS22185 at 1343.017 kb on + strand, within ABZR87_RS22185 at 1343.017 kb on + strand, within ABZR87_RS22185 at 1343.017 kb on + strand, within ABZR87_RS22185 at 1343.018 kb on - strand, within ABZR87_RS22185 at 1343.018 kb on - strand, within ABZR87_RS22185 at 1343.018 kb on - strand, within ABZR87_RS22185 at 1343.018 kb on - strand, within ABZR87_RS22185 at 1343.018 kb on - strand, within ABZR87_RS22185 at 1343.018 kb on - strand, within ABZR87_RS22185 at 1343.251 kb on + strand at 1343.251 kb on + strand at 1343.251 kb on + strand at 1343.251 kb on + strand at 1343.252 kb on - strand at 1343.252 kb on - strand at 1343.252 kb on - strand at 1343.252 kb on - strand at 1343.252 kb on - strand at 1343.252 kb on - strand at 1343.252 kb on - strand at 1343.495 kb on + strand at 1343.495 kb on + strand at 1343.495 kb on + strand at 1343.495 kb on + strand at 1343.495 kb on + strand at 1343.495 kb on + strand at 1343.495 kb on + strand at 1343.495 kb on + strand at 1343.496 kb on - strand at 1343.496 kb on - strand at 1343.496 kb on - strand at 1343.496 kb on - strand at 1343.568 kb on + strand at 1343.568 kb on + strand at 1343.568 kb on + strand at 1343.568 kb on + strand at 1343.568 kb on + strand at 1343.569 kb on - strand at 1343.569 kb on - strand at 1343.569 kb on - strand at 1343.569 kb on - strand at 1343.577 kb on - strand at 1343.577 kb on - strand at 1343.577 kb on - strand at 1343.587 kb on + strand at 1343.587 kb on + strand at 1343.588 kb on - strand at 1343.588 kb on - strand at 1343.588 kb on - strand at 1343.588 kb on - strand at 1343.649 kb on - strand at 1343.666 kb on + strand at 1343.666 kb on + strand at 1343.666 kb on + strand at 1343.667 kb on - strand at 1343.667 kb on - strand at 1343.760 kb on + strand at 1343.760 kb on + strand at 1343.760 kb on + strand at 1343.760 kb on + strand at 1343.760 kb on + strand at 1343.761 kb on - strand at 1343.761 kb on - strand at 1343.804 kb on + strand at 1343.804 kb on + strand at 1343.805 kb on - strand at 1344.069 kb on + strand, within ABZR87_RS22190 at 1344.070 kb on - strand, within ABZR87_RS22190 at 1344.132 kb on + strand, within ABZR87_RS22190 at 1344.133 kb on - strand, within ABZR87_RS22190 at 1344.133 kb on - strand, within ABZR87_RS22190 at 1344.133 kb on - strand, within ABZR87_RS22190 at 1344.133 kb on - strand, within ABZR87_RS22190 at 1344.133 kb on - strand, within ABZR87_RS22190 at 1344.134 kb on + strand, within ABZR87_RS22190 at 1344.134 kb on + strand, within ABZR87_RS22190 at 1344.135 kb on - strand, within ABZR87_RS22190 at 1344.428 kb on + strand, within ABZR87_RS22195 at 1344.428 kb on + strand, within ABZR87_RS22195 at 1344.428 kb on + strand, within ABZR87_RS22195 at 1344.428 kb on + strand, within ABZR87_RS22195 at 1344.429 kb on - strand, within ABZR87_RS22195 at 1344.429 kb on - strand, within ABZR87_RS22195 at 1344.429 kb on - strand, within ABZR87_RS22195 at 1344.436 kb on + strand, within ABZR87_RS22195 at 1344.437 kb on - strand, within ABZR87_RS22195 at 1344.437 kb on - strand, within ABZR87_RS22195 at 1344.437 kb on - strand, within ABZR87_RS22195 at 1344.437 kb on - strand, within ABZR87_RS22195 at 1344.589 kb on + strand, within ABZR87_RS22195 at 1344.589 kb on + strand, within ABZR87_RS22195 at 1344.590 kb on - strand, within ABZR87_RS22195 at 1344.762 kb on + strand, within ABZR87_RS22195 at 1344.817 kb on + strand, within ABZR87_RS22195 at 1344.818 kb on - strand, within ABZR87_RS22195 at 1344.818 kb on - strand, within ABZR87_RS22195 at 1344.841 kb on + strand, within ABZR87_RS22195 at 1344.969 kb on + strand, within ABZR87_RS22195 at 1344.969 kb on + strand, within ABZR87_RS22195 at 1344.969 kb on + strand, within ABZR87_RS22195 at 1344.969 kb on + strand, within ABZR87_RS22195 at 1344.969 kb on + strand, within ABZR87_RS22195 at 1344.969 kb on + strand, within ABZR87_RS22195 at 1344.969 kb on + strand, within ABZR87_RS22195 at 1344.970 kb on - strand, within ABZR87_RS22195 at 1344.970 kb on - strand, within ABZR87_RS22195 at 1344.970 kb on - strand, within ABZR87_RS22195 at 1344.970 kb on - strand, within ABZR87_RS22195 at 1344.970 kb on - strand, within ABZR87_RS22195 at 1344.970 kb on - strand, within ABZR87_RS22195 at 1344.970 kb on - strand, within ABZR87_RS22195 at 1344.970 kb on - strand, within ABZR87_RS22195 at 1344.982 kb on + strand, within ABZR87_RS22195 at 1344.982 kb on + strand, within ABZR87_RS22195 at 1345.208 kb on + strand, within ABZR87_RS22195 at 1345.208 kb on + strand, within ABZR87_RS22195 at 1345.209 kb on - strand, within ABZR87_RS22195 at 1345.209 kb on - strand, within ABZR87_RS22195 at 1345.237 kb on + strand at 1345.238 kb on - strand at 1345.258 kb on + strand at 1345.259 kb on - strand at 1345.259 kb on - strand at 1345.287 kb on + strand at 1345.288 kb on - strand at 1345.288 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 1,342,954 + ABZR87_RS22185 0.80 -1.1 1,343,017 + ABZR87_RS22185 0.83 -0.2 1,343,017 + ABZR87_RS22185 0.83 -0.4 1,343,017 + ABZR87_RS22185 0.83 +0.1 1,343,017 + ABZR87_RS22185 0.83 +0.4 1,343,017 + ABZR87_RS22185 0.83 +0.1 1,343,017 + ABZR87_RS22185 0.83 -0.4 1,343,017 + ABZR87_RS22185 0.83 +2.0 1,343,018 - ABZR87_RS22185 0.83 +0.4 1,343,018 - ABZR87_RS22185 0.83 +0.6 1,343,018 - ABZR87_RS22185 0.83 -0.2 1,343,018 - ABZR87_RS22185 0.83 +0.6 1,343,018 - ABZR87_RS22185 0.83 -0.6 1,343,018 - ABZR87_RS22185 0.83 -0.1 1,343,251 + +0.4 1,343,251 + +0.1 1,343,251 + +0.1 1,343,251 + -0.1 1,343,252 - +0.8 1,343,252 - +1.1 1,343,252 - +0.3 1,343,252 - -0.4 1,343,252 - +1.0 1,343,252 - +0.3 1,343,252 - -0.2 1,343,495 + -2.8 1,343,495 + +1.1 1,343,495 + -0.8 1,343,495 + +1.1 1,343,495 + +0.3 1,343,495 + +0.4 1,343,495 + -2.2 1,343,495 + +0.3 1,343,496 - +0.5 1,343,496 - +0.4 1,343,496 - -0.3 1,343,496 - +0.1 1,343,568 + +0.9 1,343,568 + -0.1 1,343,568 + -0.6 1,343,568 + +1.1 1,343,568 + -0.5 1,343,569 - +1.3 1,343,569 - +1.3 1,343,569 - -3.1 1,343,569 - -0.0 1,343,577 - +1.0 1,343,577 - +0.9 1,343,577 - -0.2 1,343,587 + -0.5 1,343,587 + -0.1 1,343,588 - -0.0 1,343,588 - +0.5 1,343,588 - +0.2 1,343,588 - +0.3 1,343,649 - +0.2 1,343,666 + +0.8 1,343,666 + +0.1 1,343,666 + +0.2 1,343,667 - -0.1 1,343,667 - -2.1 1,343,760 + +0.1 1,343,760 + -1.5 1,343,760 + -0.4 1,343,760 + +0.5 1,343,760 + +0.3 1,343,761 - -3.3 1,343,761 - +1.0 1,343,804 + -1.2 1,343,804 + +0.4 1,343,805 - -0.6 1,344,069 + ABZR87_RS22190 0.49 -2.4 1,344,070 - ABZR87_RS22190 0.50 -0.1 1,344,132 + ABZR87_RS22190 0.62 +0.3 1,344,133 - ABZR87_RS22190 0.62 -1.1 1,344,133 - ABZR87_RS22190 0.62 -0.4 1,344,133 - ABZR87_RS22190 0.62 +0.1 1,344,133 - ABZR87_RS22190 0.62 -2.0 1,344,133 - ABZR87_RS22190 0.62 -0.4 1,344,134 + ABZR87_RS22190 0.62 +2.0 1,344,134 + ABZR87_RS22190 0.62 -1.0 1,344,135 - ABZR87_RS22190 0.63 -1.9 1,344,428 + ABZR87_RS22195 0.10 -0.2 1,344,428 + ABZR87_RS22195 0.10 -0.2 1,344,428 + ABZR87_RS22195 0.10 -0.2 1,344,428 + ABZR87_RS22195 0.10 -2.7 1,344,429 - ABZR87_RS22195 0.11 -1.4 1,344,429 - ABZR87_RS22195 0.11 -0.5 1,344,429 - ABZR87_RS22195 0.11 -0.9 1,344,436 + ABZR87_RS22195 0.11 +0.4 1,344,437 - ABZR87_RS22195 0.11 +1.6 1,344,437 - ABZR87_RS22195 0.11 -1.6 1,344,437 - ABZR87_RS22195 0.11 -1.1 1,344,437 - ABZR87_RS22195 0.11 -3.5 1,344,589 + ABZR87_RS22195 0.26 -0.6 1,344,589 + ABZR87_RS22195 0.26 -2.1 1,344,590 - ABZR87_RS22195 0.27 -1.0 1,344,762 + ABZR87_RS22195 0.44 +2.6 1,344,817 + ABZR87_RS22195 0.49 -1.2 1,344,818 - ABZR87_RS22195 0.49 -1.0 1,344,818 - ABZR87_RS22195 0.49 -0.1 1,344,841 + ABZR87_RS22195 0.51 -2.0 1,344,969 + ABZR87_RS22195 0.64 +0.4 1,344,969 + ABZR87_RS22195 0.64 -1.0 1,344,969 + ABZR87_RS22195 0.64 -0.4 1,344,969 + ABZR87_RS22195 0.64 -0.3 1,344,969 + ABZR87_RS22195 0.64 -1.6 1,344,969 + ABZR87_RS22195 0.64 -0.9 1,344,969 + ABZR87_RS22195 0.64 -0.6 1,344,970 - ABZR87_RS22195 0.64 -0.9 1,344,970 - ABZR87_RS22195 0.64 -1.3 1,344,970 - ABZR87_RS22195 0.64 -1.7 1,344,970 - ABZR87_RS22195 0.64 +1.3 1,344,970 - ABZR87_RS22195 0.64 -0.2 1,344,970 - ABZR87_RS22195 0.64 +0.6 1,344,970 - ABZR87_RS22195 0.64 -1.4 1,344,970 - ABZR87_RS22195 0.64 +1.0 1,344,982 + ABZR87_RS22195 0.65 -2.1 1,344,982 + ABZR87_RS22195 0.65 -0.0 1,345,208 + ABZR87_RS22195 0.88 -1.3 1,345,208 + ABZR87_RS22195 0.88 -0.7 1,345,209 - ABZR87_RS22195 0.88 -0.6 1,345,209 - ABZR87_RS22195 0.88 +0.3 1,345,237 + -0.9 1,345,238 - +0.1 1,345,258 + -0.4 1,345,259 - -1.4 1,345,259 - -0.6 1,345,287 + -0.0 1,345,288 - -1.0 1,345,288 - -1.9
Or see this region's nucleotide sequence