Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22075 and ABZR87_RS22080 overlap by 4 nucleotides ABZR87_RS22080 and ABZR87_RS22085 are separated by 281 nucleotides ABZR87_RS22085 and ABZR87_RS22090 are separated by 37 nucleotides
ABZR87_RS22075: ABZR87_RS22075 - flagellar motor switch protein FliG, at 1,321,311 to 1,322,303
_RS22075
ABZR87_RS22080: ABZR87_RS22080 - flagellar basal-body MS-ring/collar protein FliF, at 1,322,300 to 1,324,135
_RS22080
ABZR87_RS22085: ABZR87_RS22085 - flagellar hook-basal body complex protein FliE, at 1,324,417 to 1,324,758
_RS22085
ABZR87_RS22090: ABZR87_RS22090 - glycosyltransferase family 2 protein, at 1,324,796 to 1,325,905
_RS22090
Position (kb)
1322
1323
1324
1325 Strain fitness (log2 ratio)
-2
-1
0
1 at 1321.318 kb on + strand at 1321.318 kb on + strand at 1321.318 kb on + strand at 1321.319 kb on - strand at 1321.319 kb on - strand at 1321.352 kb on - strand at 1321.870 kb on + strand, within ABZR87_RS22075 at 1321.870 kb on + strand, within ABZR87_RS22075 at 1322.083 kb on + strand, within ABZR87_RS22075 at 1322.083 kb on + strand, within ABZR87_RS22075 at 1322.084 kb on - strand, within ABZR87_RS22075 at 1322.084 kb on - strand, within ABZR87_RS22075 at 1322.084 kb on - strand, within ABZR87_RS22075 at 1322.084 kb on - strand, within ABZR87_RS22075 at 1322.308 kb on + strand at 1322.637 kb on + strand, within ABZR87_RS22080 at 1322.638 kb on - strand, within ABZR87_RS22080 at 1322.638 kb on - strand, within ABZR87_RS22080 at 1322.638 kb on - strand, within ABZR87_RS22080 at 1322.658 kb on + strand, within ABZR87_RS22080 at 1322.659 kb on - strand, within ABZR87_RS22080 at 1322.853 kb on + strand, within ABZR87_RS22080 at 1322.853 kb on + strand, within ABZR87_RS22080 at 1322.853 kb on + strand, within ABZR87_RS22080 at 1322.854 kb on - strand, within ABZR87_RS22080 at 1322.854 kb on - strand, within ABZR87_RS22080 at 1322.885 kb on + strand, within ABZR87_RS22080 at 1322.886 kb on - strand, within ABZR87_RS22080 at 1322.886 kb on - strand, within ABZR87_RS22080 at 1322.934 kb on + strand, within ABZR87_RS22080 at 1322.934 kb on + strand, within ABZR87_RS22080 at 1322.934 kb on + strand, within ABZR87_RS22080 at 1322.934 kb on + strand, within ABZR87_RS22080 at 1322.935 kb on - strand, within ABZR87_RS22080 at 1322.935 kb on - strand, within ABZR87_RS22080 at 1323.166 kb on + strand, within ABZR87_RS22080 at 1323.213 kb on + strand, within ABZR87_RS22080 at 1323.214 kb on - strand, within ABZR87_RS22080 at 1323.261 kb on - strand, within ABZR87_RS22080 at 1323.324 kb on + strand, within ABZR87_RS22080 at 1323.324 kb on + strand, within ABZR87_RS22080 at 1323.324 kb on + strand, within ABZR87_RS22080 at 1323.325 kb on - strand, within ABZR87_RS22080 at 1323.325 kb on - strand, within ABZR87_RS22080 at 1323.325 kb on - strand, within ABZR87_RS22080 at 1323.348 kb on + strand, within ABZR87_RS22080 at 1323.348 kb on + strand, within ABZR87_RS22080 at 1323.348 kb on + strand, within ABZR87_RS22080 at 1323.348 kb on + strand, within ABZR87_RS22080 at 1323.348 kb on + strand, within ABZR87_RS22080 at 1323.349 kb on - strand, within ABZR87_RS22080 at 1323.520 kb on - strand, within ABZR87_RS22080 at 1323.520 kb on - strand, within ABZR87_RS22080 at 1323.666 kb on + strand, within ABZR87_RS22080 at 1323.666 kb on + strand, within ABZR87_RS22080 at 1323.666 kb on + strand, within ABZR87_RS22080 at 1323.667 kb on - strand, within ABZR87_RS22080 at 1323.667 kb on - strand, within ABZR87_RS22080 at 1323.694 kb on + strand, within ABZR87_RS22080 at 1323.695 kb on - strand, within ABZR87_RS22080 at 1323.897 kb on + strand, within ABZR87_RS22080 at 1323.897 kb on + strand, within ABZR87_RS22080 at 1323.898 kb on - strand, within ABZR87_RS22080 at 1323.898 kb on - strand, within ABZR87_RS22080 at 1323.898 kb on - strand, within ABZR87_RS22080 at 1323.910 kb on - strand, within ABZR87_RS22080 at 1324.081 kb on + strand at 1324.082 kb on - strand at 1324.155 kb on + strand at 1324.155 kb on + strand at 1324.155 kb on + strand at 1324.316 kb on + strand at 1324.391 kb on + strand at 1324.391 kb on + strand at 1324.391 kb on + strand at 1324.392 kb on - strand at 1324.422 kb on + strand at 1324.423 kb on - strand at 1324.425 kb on + strand at 1324.425 kb on + strand at 1324.425 kb on + strand at 1324.426 kb on - strand at 1324.426 kb on - strand at 1324.426 kb on - strand at 1324.426 kb on - strand at 1324.729 kb on + strand at 1324.730 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 1,321,318 + -0.6 1,321,318 + -0.5 1,321,318 + -0.6 1,321,319 - -0.5 1,321,319 - -1.0 1,321,352 - +0.0 1,321,870 + ABZR87_RS22075 0.56 -0.7 1,321,870 + ABZR87_RS22075 0.56 -0.1 1,322,083 + ABZR87_RS22075 0.78 -0.2 1,322,083 + ABZR87_RS22075 0.78 +0.3 1,322,084 - ABZR87_RS22075 0.78 -0.4 1,322,084 - ABZR87_RS22075 0.78 -0.1 1,322,084 - ABZR87_RS22075 0.78 -1.2 1,322,084 - ABZR87_RS22075 0.78 -1.4 1,322,308 + -1.5 1,322,637 + ABZR87_RS22080 0.18 -1.2 1,322,638 - ABZR87_RS22080 0.18 -0.7 1,322,638 - ABZR87_RS22080 0.18 -0.8 1,322,638 - ABZR87_RS22080 0.18 +0.2 1,322,658 + ABZR87_RS22080 0.19 -1.0 1,322,659 - ABZR87_RS22080 0.20 -0.7 1,322,853 + ABZR87_RS22080 0.30 -1.3 1,322,853 + ABZR87_RS22080 0.30 -0.8 1,322,853 + ABZR87_RS22080 0.30 -2.5 1,322,854 - ABZR87_RS22080 0.30 -0.8 1,322,854 - ABZR87_RS22080 0.30 -1.1 1,322,885 + ABZR87_RS22080 0.32 -1.3 1,322,886 - ABZR87_RS22080 0.32 -1.4 1,322,886 - ABZR87_RS22080 0.32 -0.9 1,322,934 + ABZR87_RS22080 0.35 -0.7 1,322,934 + ABZR87_RS22080 0.35 -0.3 1,322,934 + ABZR87_RS22080 0.35 -1.7 1,322,934 + ABZR87_RS22080 0.35 -0.8 1,322,935 - ABZR87_RS22080 0.35 -0.5 1,322,935 - ABZR87_RS22080 0.35 -0.8 1,323,166 + ABZR87_RS22080 0.47 -0.7 1,323,213 + ABZR87_RS22080 0.50 -1.8 1,323,214 - ABZR87_RS22080 0.50 -0.6 1,323,261 - ABZR87_RS22080 0.52 -0.3 1,323,324 + ABZR87_RS22080 0.56 -0.7 1,323,324 + ABZR87_RS22080 0.56 -1.0 1,323,324 + ABZR87_RS22080 0.56 -0.6 1,323,325 - ABZR87_RS22080 0.56 +1.2 1,323,325 - ABZR87_RS22080 0.56 -2.7 1,323,325 - ABZR87_RS22080 0.56 -0.6 1,323,348 + ABZR87_RS22080 0.57 -1.9 1,323,348 + ABZR87_RS22080 0.57 +0.4 1,323,348 + ABZR87_RS22080 0.57 -0.2 1,323,348 + ABZR87_RS22080 0.57 -1.2 1,323,348 + ABZR87_RS22080 0.57 -0.1 1,323,349 - ABZR87_RS22080 0.57 -0.6 1,323,520 - ABZR87_RS22080 0.66 -0.6 1,323,520 - ABZR87_RS22080 0.66 -0.9 1,323,666 + ABZR87_RS22080 0.74 -0.7 1,323,666 + ABZR87_RS22080 0.74 +1.5 1,323,666 + ABZR87_RS22080 0.74 -1.7 1,323,667 - ABZR87_RS22080 0.74 -0.5 1,323,667 - ABZR87_RS22080 0.74 -0.6 1,323,694 + ABZR87_RS22080 0.76 -1.9 1,323,695 - ABZR87_RS22080 0.76 +0.2 1,323,897 + ABZR87_RS22080 0.87 -2.0 1,323,897 + ABZR87_RS22080 0.87 -1.4 1,323,898 - ABZR87_RS22080 0.87 -1.8 1,323,898 - ABZR87_RS22080 0.87 -0.5 1,323,898 - ABZR87_RS22080 0.87 +0.1 1,323,910 - ABZR87_RS22080 0.88 -1.0 1,324,081 + -0.9 1,324,082 - -1.4 1,324,155 + -0.4 1,324,155 + -1.3 1,324,155 + -1.5 1,324,316 + -1.5 1,324,391 + -0.5 1,324,391 + -0.3 1,324,391 + -0.0 1,324,392 - +0.1 1,324,422 + +0.3 1,324,423 - -1.8 1,324,425 + -0.9 1,324,425 + -0.4 1,324,425 + -1.2 1,324,426 - -0.2 1,324,426 - -1.1 1,324,426 - -1.5 1,324,426 - -0.3 1,324,729 + -0.6 1,324,730 - -1.9
Or see this region's nucleotide sequence