Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21765 and ABZR87_RS21770 overlap by 26 nucleotides ABZR87_RS21770 and ABZR87_RS21775 are separated by 81 nucleotides
ABZR87_RS21765: ABZR87_RS21765 - family 2A encapsulin nanocompartment cargo protein cysteine desulfurase, at 1,267,825 to 1,269,693
_RS21765
ABZR87_RS21770: ABZR87_RS21770 - family 2A encapsulin nanocompartment shell protein, at 1,269,668 to 1,270,606
_RS21770
ABZR87_RS21775: ABZR87_RS21775 - serine O-acetyltransferase EpsC, at 1,270,688 to 1,271,722
_RS21775
Position (kb)
1269
1270
1271 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1268.834 kb on + strand, within ABZR87_RS21765 at 1268.834 kb on + strand, within ABZR87_RS21765 at 1268.834 kb on + strand, within ABZR87_RS21765 at 1268.906 kb on + strand, within ABZR87_RS21765 at 1268.944 kb on - strand, within ABZR87_RS21765 at 1268.944 kb on - strand, within ABZR87_RS21765 at 1269.076 kb on - strand, within ABZR87_RS21765 at 1269.131 kb on + strand, within ABZR87_RS21765 at 1269.132 kb on - strand, within ABZR87_RS21765 at 1269.132 kb on - strand, within ABZR87_RS21765 at 1269.350 kb on + strand, within ABZR87_RS21765 at 1269.350 kb on + strand, within ABZR87_RS21765 at 1269.350 kb on + strand, within ABZR87_RS21765 at 1269.350 kb on + strand, within ABZR87_RS21765 at 1269.351 kb on - strand, within ABZR87_RS21765 at 1269.351 kb on - strand, within ABZR87_RS21765 at 1269.351 kb on - strand, within ABZR87_RS21765 at 1269.351 kb on - strand, within ABZR87_RS21765 at 1269.351 kb on - strand, within ABZR87_RS21765 at 1269.354 kb on - strand, within ABZR87_RS21765 at 1269.669 kb on + strand at 1269.669 kb on + strand at 1269.670 kb on - strand at 1269.670 kb on - strand at 1269.670 kb on - strand at 1269.670 kb on - strand at 1269.675 kb on + strand at 1269.676 kb on - strand at 1269.676 kb on - strand at 1269.676 kb on - strand at 1269.676 kb on - strand at 1269.676 kb on - strand at 1269.676 kb on - strand at 1269.676 kb on - strand at 1269.676 kb on - strand at 1269.696 kb on + strand at 1269.696 kb on + strand at 1269.696 kb on + strand at 1269.697 kb on - strand at 1269.697 kb on - strand at 1269.762 kb on + strand, within ABZR87_RS21770 at 1269.762 kb on + strand, within ABZR87_RS21770 at 1269.762 kb on + strand, within ABZR87_RS21770 at 1269.762 kb on + strand, within ABZR87_RS21770 at 1269.762 kb on + strand, within ABZR87_RS21770 at 1269.778 kb on - strand, within ABZR87_RS21770 at 1269.858 kb on + strand, within ABZR87_RS21770 at 1270.281 kb on + strand, within ABZR87_RS21770 at 1270.282 kb on - strand, within ABZR87_RS21770 at 1270.282 kb on - strand, within ABZR87_RS21770 at 1270.300 kb on + strand, within ABZR87_RS21770 at 1270.300 kb on + strand, within ABZR87_RS21770 at 1270.301 kb on - strand, within ABZR87_RS21770 at 1270.301 kb on - strand, within ABZR87_RS21770 at 1270.301 kb on - strand, within ABZR87_RS21770 at 1270.301 kb on - strand, within ABZR87_RS21770 at 1270.338 kb on + strand, within ABZR87_RS21770 at 1270.338 kb on + strand, within ABZR87_RS21770 at 1270.339 kb on - strand, within ABZR87_RS21770 at 1270.359 kb on + strand, within ABZR87_RS21770 at 1270.624 kb on - strand at 1270.667 kb on - strand at 1270.667 kb on - strand at 1270.915 kb on - strand, within ABZR87_RS21775 at 1270.915 kb on - strand, within ABZR87_RS21775 at 1270.915 kb on - strand, within ABZR87_RS21775 at 1271.019 kb on + strand, within ABZR87_RS21775 at 1271.020 kb on - strand, within ABZR87_RS21775 at 1271.020 kb on - strand, within ABZR87_RS21775 at 1271.023 kb on + strand, within ABZR87_RS21775 at 1271.023 kb on + strand, within ABZR87_RS21775 at 1271.023 kb on + strand, within ABZR87_RS21775 at 1271.024 kb on - strand, within ABZR87_RS21775 at 1271.024 kb on - strand, within ABZR87_RS21775 at 1271.236 kb on - strand, within ABZR87_RS21775 at 1271.284 kb on - strand, within ABZR87_RS21775 at 1271.284 kb on - strand, within ABZR87_RS21775 at 1271.464 kb on + strand, within ABZR87_RS21775 at 1271.475 kb on + strand, within ABZR87_RS21775 at 1271.475 kb on + strand, within ABZR87_RS21775 at 1271.476 kb on - strand, within ABZR87_RS21775 at 1271.476 kb on - strand, within ABZR87_RS21775
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 1,268,834 + ABZR87_RS21765 0.54 +0.1 1,268,834 + ABZR87_RS21765 0.54 +0.8 1,268,834 + ABZR87_RS21765 0.54 -0.3 1,268,906 + ABZR87_RS21765 0.58 -2.6 1,268,944 - ABZR87_RS21765 0.60 -1.9 1,268,944 - ABZR87_RS21765 0.60 +0.0 1,269,076 - ABZR87_RS21765 0.67 +0.6 1,269,131 + ABZR87_RS21765 0.70 -0.1 1,269,132 - ABZR87_RS21765 0.70 -0.0 1,269,132 - ABZR87_RS21765 0.70 -0.5 1,269,350 + ABZR87_RS21765 0.82 -1.6 1,269,350 + ABZR87_RS21765 0.82 +0.3 1,269,350 + ABZR87_RS21765 0.82 +0.1 1,269,350 + ABZR87_RS21765 0.82 +0.0 1,269,351 - ABZR87_RS21765 0.82 +0.7 1,269,351 - ABZR87_RS21765 0.82 -1.5 1,269,351 - ABZR87_RS21765 0.82 +1.8 1,269,351 - ABZR87_RS21765 0.82 -0.3 1,269,351 - ABZR87_RS21765 0.82 +0.7 1,269,354 - ABZR87_RS21765 0.82 -0.3 1,269,669 + +0.2 1,269,669 + +0.0 1,269,670 - -0.1 1,269,670 - -0.8 1,269,670 - +0.0 1,269,670 - -0.0 1,269,675 + -0.3 1,269,676 - -2.0 1,269,676 - +1.0 1,269,676 - -2.2 1,269,676 - -0.6 1,269,676 - -0.5 1,269,676 - -1.0 1,269,676 - +0.3 1,269,676 - +0.4 1,269,696 + +1.0 1,269,696 + -0.3 1,269,696 + -0.1 1,269,697 - -0.6 1,269,697 - +1.0 1,269,762 + ABZR87_RS21770 0.10 +0.1 1,269,762 + ABZR87_RS21770 0.10 +1.0 1,269,762 + ABZR87_RS21770 0.10 +0.1 1,269,762 + ABZR87_RS21770 0.10 -1.0 1,269,762 + ABZR87_RS21770 0.10 +0.9 1,269,778 - ABZR87_RS21770 0.12 +1.8 1,269,858 + ABZR87_RS21770 0.20 +0.1 1,270,281 + ABZR87_RS21770 0.65 -1.4 1,270,282 - ABZR87_RS21770 0.65 -0.1 1,270,282 - ABZR87_RS21770 0.65 +0.5 1,270,300 + ABZR87_RS21770 0.67 -0.4 1,270,300 + ABZR87_RS21770 0.67 +0.6 1,270,301 - ABZR87_RS21770 0.67 +0.1 1,270,301 - ABZR87_RS21770 0.67 +0.5 1,270,301 - ABZR87_RS21770 0.67 -0.1 1,270,301 - ABZR87_RS21770 0.67 +0.8 1,270,338 + ABZR87_RS21770 0.71 +0.0 1,270,338 + ABZR87_RS21770 0.71 +0.6 1,270,339 - ABZR87_RS21770 0.71 +0.9 1,270,359 + ABZR87_RS21770 0.74 +0.8 1,270,624 - +0.2 1,270,667 - -0.3 1,270,667 - -0.5 1,270,915 - ABZR87_RS21775 0.22 +0.4 1,270,915 - ABZR87_RS21775 0.22 +2.0 1,270,915 - ABZR87_RS21775 0.22 -2.2 1,271,019 + ABZR87_RS21775 0.32 +0.5 1,271,020 - ABZR87_RS21775 0.32 -1.2 1,271,020 - ABZR87_RS21775 0.32 +0.6 1,271,023 + ABZR87_RS21775 0.32 +0.1 1,271,023 + ABZR87_RS21775 0.32 -0.0 1,271,023 + ABZR87_RS21775 0.32 +0.3 1,271,024 - ABZR87_RS21775 0.32 -0.3 1,271,024 - ABZR87_RS21775 0.32 +1.2 1,271,236 - ABZR87_RS21775 0.53 +0.4 1,271,284 - ABZR87_RS21775 0.58 -0.9 1,271,284 - ABZR87_RS21775 0.58 +1.2 1,271,464 + ABZR87_RS21775 0.75 -0.1 1,271,475 + ABZR87_RS21775 0.76 +0.1 1,271,475 + ABZR87_RS21775 0.76 -1.5 1,271,476 - ABZR87_RS21775 0.76 +1.0 1,271,476 - ABZR87_RS21775 0.76 -0.9
Or see this region's nucleotide sequence