Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21510 and ABZR87_RS21515 are separated by 2 nucleotides ABZR87_RS21515 and ABZR87_RS21520 are separated by 28 nucleotides ABZR87_RS21520 and ABZR87_RS21525 are separated by 45 nucleotides
ABZR87_RS21510: ABZR87_RS21510 - ABC transporter ATP-binding protein, at 1,208,123 to 1,209,760
_RS21510
ABZR87_RS21515: ABZR87_RS21515 - ABC transporter permease, at 1,209,763 to 1,210,677
_RS21515
ABZR87_RS21520: ABZR87_RS21520 - ABC transporter permease, at 1,210,706 to 1,211,662
_RS21520
ABZR87_RS21525: ABZR87_RS21525 - ABC transporter substrate-binding protein, at 1,211,708 to 1,213,327
_RS21525
Position (kb)
1210
1211
1212 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1209.992 kb on + strand, within ABZR87_RS21515 at 1209.992 kb on + strand, within ABZR87_RS21515 at 1209.993 kb on - strand, within ABZR87_RS21515 at 1209.993 kb on - strand, within ABZR87_RS21515 at 1210.064 kb on + strand, within ABZR87_RS21515 at 1210.064 kb on + strand, within ABZR87_RS21515 at 1210.064 kb on + strand, within ABZR87_RS21515 at 1210.065 kb on - strand, within ABZR87_RS21515 at 1210.065 kb on - strand, within ABZR87_RS21515 at 1210.065 kb on - strand, within ABZR87_RS21515 at 1210.103 kb on + strand, within ABZR87_RS21515 at 1210.164 kb on - strand, within ABZR87_RS21515 at 1210.164 kb on - strand, within ABZR87_RS21515 at 1210.164 kb on - strand, within ABZR87_RS21515 at 1210.324 kb on + strand, within ABZR87_RS21515 at 1210.380 kb on - strand, within ABZR87_RS21515 at 1210.380 kb on - strand, within ABZR87_RS21515 at 1210.425 kb on - strand, within ABZR87_RS21515 at 1210.425 kb on - strand, within ABZR87_RS21515 at 1210.653 kb on + strand at 1210.653 kb on + strand at 1210.695 kb on + strand at 1210.696 kb on - strand at 1210.773 kb on + strand at 1210.774 kb on - strand at 1210.829 kb on + strand, within ABZR87_RS21520 at 1210.863 kb on + strand, within ABZR87_RS21520 at 1210.863 kb on + strand, within ABZR87_RS21520 at 1210.906 kb on - strand, within ABZR87_RS21520 at 1211.016 kb on + strand, within ABZR87_RS21520 at 1211.016 kb on + strand, within ABZR87_RS21520 at 1211.017 kb on - strand, within ABZR87_RS21520 at 1211.017 kb on - strand, within ABZR87_RS21520 at 1211.017 kb on - strand, within ABZR87_RS21520 at 1211.151 kb on + strand, within ABZR87_RS21520 at 1211.151 kb on + strand, within ABZR87_RS21520 at 1211.564 kb on + strand, within ABZR87_RS21520 at 1211.565 kb on - strand, within ABZR87_RS21520 at 1211.645 kb on - strand at 1211.695 kb on + strand at 1211.743 kb on - strand at 1211.871 kb on + strand, within ABZR87_RS21525 at 1211.871 kb on + strand, within ABZR87_RS21525 at 1211.871 kb on + strand, within ABZR87_RS21525 at 1211.872 kb on - strand, within ABZR87_RS21525 at 1211.872 kb on - strand, within ABZR87_RS21525 at 1212.153 kb on + strand, within ABZR87_RS21525 at 1212.154 kb on - strand, within ABZR87_RS21525 at 1212.154 kb on - strand, within ABZR87_RS21525 at 1212.154 kb on - strand, within ABZR87_RS21525 at 1212.264 kb on + strand, within ABZR87_RS21525 at 1212.264 kb on + strand, within ABZR87_RS21525 at 1212.264 kb on + strand, within ABZR87_RS21525 at 1212.265 kb on - strand, within ABZR87_RS21525 at 1212.265 kb on - strand, within ABZR87_RS21525 at 1212.312 kb on + strand, within ABZR87_RS21525 at 1212.313 kb on - strand, within ABZR87_RS21525 at 1212.378 kb on + strand, within ABZR87_RS21525 at 1212.426 kb on + strand, within ABZR87_RS21525 at 1212.619 kb on + strand, within ABZR87_RS21525
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 1,209,992 + ABZR87_RS21515 0.25 -1.0 1,209,992 + ABZR87_RS21515 0.25 +0.4 1,209,993 - ABZR87_RS21515 0.25 -0.1 1,209,993 - ABZR87_RS21515 0.25 +0.6 1,210,064 + ABZR87_RS21515 0.33 -1.2 1,210,064 + ABZR87_RS21515 0.33 +0.1 1,210,064 + ABZR87_RS21515 0.33 -0.5 1,210,065 - ABZR87_RS21515 0.33 +1.1 1,210,065 - ABZR87_RS21515 0.33 -0.6 1,210,065 - ABZR87_RS21515 0.33 +0.2 1,210,103 + ABZR87_RS21515 0.37 -1.9 1,210,164 - ABZR87_RS21515 0.44 +0.2 1,210,164 - ABZR87_RS21515 0.44 +0.5 1,210,164 - ABZR87_RS21515 0.44 +0.1 1,210,324 + ABZR87_RS21515 0.61 +0.5 1,210,380 - ABZR87_RS21515 0.67 -0.8 1,210,380 - ABZR87_RS21515 0.67 +0.1 1,210,425 - ABZR87_RS21515 0.72 +0.2 1,210,425 - ABZR87_RS21515 0.72 -0.8 1,210,653 + -0.1 1,210,653 + -0.0 1,210,695 + -0.3 1,210,696 - +0.2 1,210,773 + +0.2 1,210,774 - +0.4 1,210,829 + ABZR87_RS21520 0.13 -2.4 1,210,863 + ABZR87_RS21520 0.16 +2.8 1,210,863 + ABZR87_RS21520 0.16 -0.4 1,210,906 - ABZR87_RS21520 0.21 -1.1 1,211,016 + ABZR87_RS21520 0.32 -1.8 1,211,016 + ABZR87_RS21520 0.32 -0.5 1,211,017 - ABZR87_RS21520 0.32 -1.6 1,211,017 - ABZR87_RS21520 0.32 +1.5 1,211,017 - ABZR87_RS21520 0.32 -0.5 1,211,151 + ABZR87_RS21520 0.46 -0.2 1,211,151 + ABZR87_RS21520 0.46 -1.7 1,211,564 + ABZR87_RS21520 0.90 +0.5 1,211,565 - ABZR87_RS21520 0.90 -0.1 1,211,645 - -1.2 1,211,695 + -0.0 1,211,743 - -0.9 1,211,871 + ABZR87_RS21525 0.10 -0.7 1,211,871 + ABZR87_RS21525 0.10 -0.1 1,211,871 + ABZR87_RS21525 0.10 -0.0 1,211,872 - ABZR87_RS21525 0.10 -1.2 1,211,872 - ABZR87_RS21525 0.10 +0.7 1,212,153 + ABZR87_RS21525 0.27 +0.7 1,212,154 - ABZR87_RS21525 0.28 -0.3 1,212,154 - ABZR87_RS21525 0.28 -0.0 1,212,154 - ABZR87_RS21525 0.28 -0.4 1,212,264 + ABZR87_RS21525 0.34 +0.6 1,212,264 + ABZR87_RS21525 0.34 +0.8 1,212,264 + ABZR87_RS21525 0.34 +1.0 1,212,265 - ABZR87_RS21525 0.34 +0.9 1,212,265 - ABZR87_RS21525 0.34 -0.6 1,212,312 + ABZR87_RS21525 0.37 +1.0 1,212,313 - ABZR87_RS21525 0.37 +0.5 1,212,378 + ABZR87_RS21525 0.41 -0.1 1,212,426 + ABZR87_RS21525 0.44 -0.2 1,212,619 + ABZR87_RS21525 0.56 -0.0
Or see this region's nucleotide sequence