Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20270

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20265 and ABZR87_RS20270 are separated by 29 nucleotidesABZR87_RS20270 and ABZR87_RS20275 are separated by 12 nucleotides ABZR87_RS20265: ABZR87_RS20265 - type VI secretion system Vgr family protein, at 932,732 to 935,452 _RS20265 ABZR87_RS20270: ABZR87_RS20270 - hypothetical protein, at 935,482 to 935,865 _RS20270 ABZR87_RS20275: ABZR87_RS20275 - hypothetical protein, at 935,878 to 937,155 _RS20275 Position (kb) 935 936Strain fitness (log2 ratio) -2 -1 0 1 2 3at 934.703 kb on + strand, within ABZR87_RS20265at 934.703 kb on + strand, within ABZR87_RS20265at 934.703 kb on + strand, within ABZR87_RS20265at 934.703 kb on + strand, within ABZR87_RS20265at 934.704 kb on - strand, within ABZR87_RS20265at 934.704 kb on - strand, within ABZR87_RS20265at 934.704 kb on - strand, within ABZR87_RS20265at 934.824 kb on - strand, within ABZR87_RS20265at 934.982 kb on - strand, within ABZR87_RS20265at 935.008 kb on + strand, within ABZR87_RS20265at 935.008 kb on + strand, within ABZR87_RS20265at 935.009 kb on - strand, within ABZR87_RS20265at 935.017 kb on + strand, within ABZR87_RS20265at 935.023 kb on + strand, within ABZR87_RS20265at 935.220 kb on + strandat 935.220 kb on + strandat 935.220 kb on + strandat 935.220 kb on + strandat 935.220 kb on + strandat 935.220 kb on + strandat 935.220 kb on + strandat 935.221 kb on - strandat 935.221 kb on - strandat 935.221 kb on - strandat 935.221 kb on - strandat 935.221 kb on - strandat 935.221 kb on - strandat 935.285 kb on + strandat 935.286 kb on - strandat 935.329 kb on + strandat 935.329 kb on + strandat 935.330 kb on - strandat 935.330 kb on - strandat 935.345 kb on - strandat 935.387 kb on + strandat 935.387 kb on + strandat 935.387 kb on + strandat 935.387 kb on + strandat 935.387 kb on + strandat 935.387 kb on + strandat 935.388 kb on - strandat 935.388 kb on - strandat 935.426 kb on - strandat 935.426 kb on - strandat 935.450 kb on + strandat 935.451 kb on - strandat 935.451 kb on - strandat 935.458 kb on + strandat 935.458 kb on + strandat 935.459 kb on - strandat 935.459 kb on - strandat 935.515 kb on - strandat 935.536 kb on + strand, within ABZR87_RS20270at 935.536 kb on + strand, within ABZR87_RS20270at 935.536 kb on + strand, within ABZR87_RS20270at 935.537 kb on - strand, within ABZR87_RS20270at 935.537 kb on - strand, within ABZR87_RS20270at 935.562 kb on + strand, within ABZR87_RS20270at 935.562 kb on + strand, within ABZR87_RS20270at 935.562 kb on + strand, within ABZR87_RS20270at 935.563 kb on - strand, within ABZR87_RS20270at 935.563 kb on - strand, within ABZR87_RS20270at 935.583 kb on + strand, within ABZR87_RS20270at 935.583 kb on + strand, within ABZR87_RS20270at 935.584 kb on - strand, within ABZR87_RS20270at 935.584 kb on - strand, within ABZR87_RS20270at 935.584 kb on - strand, within ABZR87_RS20270at 935.613 kb on + strand, within ABZR87_RS20270at 935.727 kb on + strand, within ABZR87_RS20270at 935.728 kb on - strand, within ABZR87_RS20270at 935.820 kb on + strand, within ABZR87_RS20270at 935.820 kb on + strand, within ABZR87_RS20270at 935.820 kb on + strand, within ABZR87_RS20270at 935.821 kb on - strand, within ABZR87_RS20270at 935.821 kb on - strand, within ABZR87_RS20270at 935.821 kb on - strand, within ABZR87_RS20270at 935.821 kb on - strand, within ABZR87_RS20270at 935.940 kb on + strandat 935.940 kb on + strandat 935.941 kb on - strandat 935.941 kb on - strandat 935.941 kb on - strandat 935.975 kb on - strandat 935.988 kb on - strandat 935.988 kb on - strandat 935.993 kb on + strandat 935.993 kb on + strandat 935.993 kb on + strandat 935.994 kb on - strandat 935.994 kb on - strandat 935.994 kb on - strandat 936.019 kb on - strand, within ABZR87_RS20275at 936.019 kb on - strand, within ABZR87_RS20275at 936.040 kb on + strand, within ABZR87_RS20275at 936.108 kb on + strand, within ABZR87_RS20275at 936.108 kb on + strand, within ABZR87_RS20275at 936.108 kb on + strand, within ABZR87_RS20275at 936.108 kb on + strand, within ABZR87_RS20275at 936.108 kb on + strand, within ABZR87_RS20275at 936.109 kb on - strand, within ABZR87_RS20275at 936.109 kb on - strand, within ABZR87_RS20275at 936.109 kb on - strand, within ABZR87_RS20275at 936.109 kb on - strand, within ABZR87_RS20275at 936.163 kb on + strand, within ABZR87_RS20275at 936.164 kb on - strand, within ABZR87_RS20275at 936.164 kb on - strand, within ABZR87_RS20275at 936.168 kb on + strand, within ABZR87_RS20275at 936.183 kb on - strand, within ABZR87_RS20275at 936.201 kb on + strand, within ABZR87_RS20275at 936.201 kb on + strand, within ABZR87_RS20275at 936.201 kb on + strand, within ABZR87_RS20275at 936.201 kb on + strand, within ABZR87_RS20275at 936.202 kb on - strand, within ABZR87_RS20275at 936.202 kb on - strand, within ABZR87_RS20275at 936.202 kb on - strand, within ABZR87_RS20275at 936.218 kb on - strand, within ABZR87_RS20275at 936.257 kb on + strand, within ABZR87_RS20275at 936.257 kb on + strand, within ABZR87_RS20275at 936.258 kb on - strand, within ABZR87_RS20275at 936.258 kb on - strand, within ABZR87_RS20275at 936.258 kb on - strand, within ABZR87_RS20275at 936.272 kb on - strand, within ABZR87_RS20275at 936.358 kb on + strand, within ABZR87_RS20275at 936.359 kb on - strand, within ABZR87_RS20275at 936.376 kb on - strand, within ABZR87_RS20275at 936.466 kb on - strand, within ABZR87_RS20275at 936.471 kb on + strand, within ABZR87_RS20275at 936.471 kb on + strand, within ABZR87_RS20275at 936.471 kb on + strand, within ABZR87_RS20275at 936.471 kb on + strand, within ABZR87_RS20275at 936.471 kb on + strand, within ABZR87_RS20275at 936.471 kb on + strand, within ABZR87_RS20275at 936.472 kb on - strand, within ABZR87_RS20275at 936.472 kb on - strand, within ABZR87_RS20275at 936.499 kb on - strand, within ABZR87_RS20275at 936.499 kb on - strand, within ABZR87_RS20275at 936.499 kb on - strand, within ABZR87_RS20275at 936.536 kb on + strand, within ABZR87_RS20275at 936.536 kb on + strand, within ABZR87_RS20275at 936.536 kb on + strand, within ABZR87_RS20275at 936.536 kb on + strand, within ABZR87_RS20275at 936.536 kb on + strand, within ABZR87_RS20275at 936.536 kb on + strand, within ABZR87_RS20275at 936.536 kb on + strand, within ABZR87_RS20275at 936.537 kb on - strand, within ABZR87_RS20275at 936.537 kb on - strand, within ABZR87_RS20275at 936.537 kb on - strand, within ABZR87_RS20275at 936.537 kb on - strand, within ABZR87_RS20275at 936.537 kb on - strand, within ABZR87_RS20275at 936.537 kb on - strand, within ABZR87_RS20275at 936.538 kb on + strand, within ABZR87_RS20275at 936.538 kb on + strand, within ABZR87_RS20275at 936.538 kb on + strand, within ABZR87_RS20275at 936.539 kb on - strand, within ABZR87_RS20275at 936.539 kb on - strand, within ABZR87_RS20275at 936.539 kb on - strand, within ABZR87_RS20275at 936.539 kb on - strand, within ABZR87_RS20275at 936.539 kb on - strand, within ABZR87_RS20275at 936.584 kb on + strand, within ABZR87_RS20275at 936.584 kb on + strand, within ABZR87_RS20275at 936.584 kb on + strand, within ABZR87_RS20275at 936.585 kb on - strand, within ABZR87_RS20275at 936.585 kb on - strand, within ABZR87_RS20275at 936.585 kb on - strand, within ABZR87_RS20275at 936.690 kb on + strand, within ABZR87_RS20275at 936.691 kb on - strand, within ABZR87_RS20275at 936.710 kb on + strand, within ABZR87_RS20275at 936.749 kb on + strand, within ABZR87_RS20275at 936.749 kb on + strand, within ABZR87_RS20275at 936.750 kb on - strand, within ABZR87_RS20275at 936.754 kb on + strand, within ABZR87_RS20275at 936.754 kb on + strand, within ABZR87_RS20275at 936.754 kb on + strand, within ABZR87_RS20275at 936.754 kb on + strand, within ABZR87_RS20275at 936.755 kb on - strand, within ABZR87_RS20275at 936.755 kb on - strand, within ABZR87_RS20275at 936.762 kb on + strand, within ABZR87_RS20275at 936.763 kb on - strand, within ABZR87_RS20275at 936.808 kb on + strand, within ABZR87_RS20275at 936.808 kb on + strand, within ABZR87_RS20275at 936.836 kb on + strand, within ABZR87_RS20275at 936.837 kb on - strand, within ABZR87_RS20275at 936.837 kb on - strand, within ABZR87_RS20275at 936.837 kb on - strand, within ABZR87_RS20275at 936.864 kb on + strand, within ABZR87_RS20275at 936.864 kb on + strand, within ABZR87_RS20275at 936.864 kb on + strand, within ABZR87_RS20275at 936.864 kb on + strand, within ABZR87_RS20275at 936.864 kb on + strand, within ABZR87_RS20275at 936.865 kb on - strand, within ABZR87_RS20275at 936.865 kb on - strand, within ABZR87_RS20275at 936.865 kb on - strand, within ABZR87_RS20275at 936.865 kb on - strand, within ABZR87_RS20275

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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934,703 + ABZR87_RS20265 0.72 +0.5
934,703 + ABZR87_RS20265 0.72 -1.4
934,703 + ABZR87_RS20265 0.72 +0.3
934,703 + ABZR87_RS20265 0.72 +0.6
934,704 - ABZR87_RS20265 0.72 +0.1
934,704 - ABZR87_RS20265 0.72 -1.5
934,704 - ABZR87_RS20265 0.72 -0.6
934,824 - ABZR87_RS20265 0.77 +1.3
934,982 - ABZR87_RS20265 0.83 -0.5
935,008 + ABZR87_RS20265 0.84 +1.8
935,008 + ABZR87_RS20265 0.84 +0.6
935,009 - ABZR87_RS20265 0.84 +0.0
935,017 + ABZR87_RS20265 0.84 -0.5
935,023 + ABZR87_RS20265 0.84 +0.5
935,220 + +0.9
935,220 + -0.6
935,220 + -1.5
935,220 + +0.5
935,220 + +0.8
935,220 + -0.2
935,220 + -1.1
935,221 - +0.4
935,221 - -0.1
935,221 - -0.8
935,221 - -0.1
935,221 - -0.6
935,221 - -1.7
935,285 + +0.0
935,286 - -0.3
935,329 + +0.0
935,329 + +0.0
935,330 - -0.6
935,330 - -1.0
935,345 - -0.3
935,387 + -0.2
935,387 + -0.0
935,387 + +0.1
935,387 + -0.2
935,387 + +0.6
935,387 + +0.9
935,388 - -0.4
935,388 - -1.5
935,426 - -2.3
935,426 - -0.8
935,450 + -0.0
935,451 - -0.4
935,451 - -2.2
935,458 + -0.9
935,458 + -0.5
935,459 - +0.3
935,459 - -1.8
935,515 - +2.6
935,536 + ABZR87_RS20270 0.14 +0.1
935,536 + ABZR87_RS20270 0.14 -0.8
935,536 + ABZR87_RS20270 0.14 +1.1
935,537 - ABZR87_RS20270 0.14 -1.8
935,537 - ABZR87_RS20270 0.14 -1.5
935,562 + ABZR87_RS20270 0.21 +0.0
935,562 + ABZR87_RS20270 0.21 -0.8
935,562 + ABZR87_RS20270 0.21 +0.5
935,563 - ABZR87_RS20270 0.21 -1.3
935,563 - ABZR87_RS20270 0.21 -1.2
935,583 + ABZR87_RS20270 0.26 +0.2
935,583 + ABZR87_RS20270 0.26 +1.5
935,584 - ABZR87_RS20270 0.27 +0.1
935,584 - ABZR87_RS20270 0.27 -0.8
935,584 - ABZR87_RS20270 0.27 -0.4
935,613 + ABZR87_RS20270 0.34 -0.2
935,727 + ABZR87_RS20270 0.64 +0.1
935,728 - ABZR87_RS20270 0.64 -2.0
935,820 + ABZR87_RS20270 0.88 +0.7
935,820 + ABZR87_RS20270 0.88 -1.6
935,820 + ABZR87_RS20270 0.88 -0.0
935,821 - ABZR87_RS20270 0.88 -0.3
935,821 - ABZR87_RS20270 0.88 -1.1
935,821 - ABZR87_RS20270 0.88 +0.1
935,821 - ABZR87_RS20270 0.88 -0.6
935,940 + +0.7
935,940 + -0.3
935,941 - -0.4
935,941 - -0.7
935,941 - -0.5
935,975 - -0.1
935,988 - -1.0
935,988 - -1.6
935,993 + -1.1
935,993 + +0.2
935,993 + +0.1
935,994 - -0.4
935,994 - -0.2
935,994 - -1.7
936,019 - ABZR87_RS20275 0.11 -0.4
936,019 - ABZR87_RS20275 0.11 -1.2
936,040 + ABZR87_RS20275 0.13 -0.2
936,108 + ABZR87_RS20275 0.18 +0.6
936,108 + ABZR87_RS20275 0.18 +0.7
936,108 + ABZR87_RS20275 0.18 -1.7
936,108 + ABZR87_RS20275 0.18 -1.5
936,108 + ABZR87_RS20275 0.18 -1.8
936,109 - ABZR87_RS20275 0.18 -1.3
936,109 - ABZR87_RS20275 0.18 -0.5
936,109 - ABZR87_RS20275 0.18 -1.4
936,109 - ABZR87_RS20275 0.18 -0.4
936,163 + ABZR87_RS20275 0.22 -0.4
936,164 - ABZR87_RS20275 0.22 -0.2
936,164 - ABZR87_RS20275 0.22 -0.3
936,168 + ABZR87_RS20275 0.23 +0.6
936,183 - ABZR87_RS20275 0.24 -0.7
936,201 + ABZR87_RS20275 0.25 +0.0
936,201 + ABZR87_RS20275 0.25 +0.7
936,201 + ABZR87_RS20275 0.25 -2.7
936,201 + ABZR87_RS20275 0.25 +0.7
936,202 - ABZR87_RS20275 0.25 +1.4
936,202 - ABZR87_RS20275 0.25 -0.7
936,202 - ABZR87_RS20275 0.25 -1.0
936,218 - ABZR87_RS20275 0.27 -1.1
936,257 + ABZR87_RS20275 0.30 -0.4
936,257 + ABZR87_RS20275 0.30 -0.2
936,258 - ABZR87_RS20275 0.30 -0.3
936,258 - ABZR87_RS20275 0.30 +1.1
936,258 - ABZR87_RS20275 0.30 -2.1
936,272 - ABZR87_RS20275 0.31 -1.2
936,358 + ABZR87_RS20275 0.38 +0.2
936,359 - ABZR87_RS20275 0.38 -1.2
936,376 - ABZR87_RS20275 0.39 +0.2
936,466 - ABZR87_RS20275 0.46 -0.4
936,471 + ABZR87_RS20275 0.46 -0.3
936,471 + ABZR87_RS20275 0.46 -0.9
936,471 + ABZR87_RS20275 0.46 +0.1
936,471 + ABZR87_RS20275 0.46 -0.6
936,471 + ABZR87_RS20275 0.46 -0.2
936,471 + ABZR87_RS20275 0.46 -1.5
936,472 - ABZR87_RS20275 0.46 -0.6
936,472 - ABZR87_RS20275 0.46 -1.7
936,499 - ABZR87_RS20275 0.49 -1.3
936,499 - ABZR87_RS20275 0.49 -0.3
936,499 - ABZR87_RS20275 0.49 -0.3
936,536 + ABZR87_RS20275 0.51 -0.1
936,536 + ABZR87_RS20275 0.51 +0.4
936,536 + ABZR87_RS20275 0.51 +0.1
936,536 + ABZR87_RS20275 0.51 -1.0
936,536 + ABZR87_RS20275 0.51 -0.8
936,536 + ABZR87_RS20275 0.51 -0.3
936,536 + ABZR87_RS20275 0.51 +0.8
936,537 - ABZR87_RS20275 0.52 -0.5
936,537 - ABZR87_RS20275 0.52 +0.4
936,537 - ABZR87_RS20275 0.52 -0.4
936,537 - ABZR87_RS20275 0.52 -0.6
936,537 - ABZR87_RS20275 0.52 +0.1
936,537 - ABZR87_RS20275 0.52 +0.5
936,538 + ABZR87_RS20275 0.52 +0.3
936,538 + ABZR87_RS20275 0.52 +1.4
936,538 + ABZR87_RS20275 0.52 -0.1
936,539 - ABZR87_RS20275 0.52 -0.2
936,539 - ABZR87_RS20275 0.52 +0.1
936,539 - ABZR87_RS20275 0.52 -1.8
936,539 - ABZR87_RS20275 0.52 -0.7
936,539 - ABZR87_RS20275 0.52 -0.7
936,584 + ABZR87_RS20275 0.55 +1.4
936,584 + ABZR87_RS20275 0.55 +0.8
936,584 + ABZR87_RS20275 0.55 -0.3
936,585 - ABZR87_RS20275 0.55 +0.6
936,585 - ABZR87_RS20275 0.55 -1.0
936,585 - ABZR87_RS20275 0.55 -1.3
936,690 + ABZR87_RS20275 0.64 -1.4
936,691 - ABZR87_RS20275 0.64 +0.4
936,710 + ABZR87_RS20275 0.65 +0.5
936,749 + ABZR87_RS20275 0.68 -0.5
936,749 + ABZR87_RS20275 0.68 +0.1
936,750 - ABZR87_RS20275 0.68 -1.1
936,754 + ABZR87_RS20275 0.69 +1.1
936,754 + ABZR87_RS20275 0.69 +0.2
936,754 + ABZR87_RS20275 0.69 -1.1
936,754 + ABZR87_RS20275 0.69 +1.4
936,755 - ABZR87_RS20275 0.69 -0.5
936,755 - ABZR87_RS20275 0.69 -1.2
936,762 + ABZR87_RS20275 0.69 -0.3
936,763 - ABZR87_RS20275 0.69 +1.3
936,808 + ABZR87_RS20275 0.73 +0.2
936,808 + ABZR87_RS20275 0.73 +0.4
936,836 + ABZR87_RS20275 0.75 -0.2
936,837 - ABZR87_RS20275 0.75 -0.1
936,837 - ABZR87_RS20275 0.75 -0.3
936,837 - ABZR87_RS20275 0.75 -2.7
936,864 + ABZR87_RS20275 0.77 +0.5
936,864 + ABZR87_RS20275 0.77 +0.2
936,864 + ABZR87_RS20275 0.77 +0.3
936,864 + ABZR87_RS20275 0.77 +2.8
936,864 + ABZR87_RS20275 0.77 -0.2
936,865 - ABZR87_RS20275 0.77 -0.2
936,865 - ABZR87_RS20275 0.77 +0.4
936,865 - ABZR87_RS20275 0.77 -0.7
936,865 - ABZR87_RS20275 0.77 -1.0

Or see this region's nucleotide sequence