Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20225 and ABZR87_RS20230 are separated by 68 nucleotides ABZR87_RS20230 and ABZR87_RS20235 are separated by 105 nucleotides ABZR87_RS20235 and ABZR87_RS20240 overlap by 8 nucleotides ABZR87_RS20240 and ABZR87_RS20245 are separated by 34 nucleotides
ABZR87_RS20225: ABZR87_RS20225 - type VI secretion system baseplate subunit TssE, at 925,680 to 926,153
_RS20225
ABZR87_RS20230: ABZR87_RS20230 - Hcp family type VI secretion system effector, at 926,222 to 926,725
_RS20230
ABZR87_RS20235: ABZR87_RS20235 - type VI secretion system contractile sheath large subunit, at 926,831 to 928,315
_RS20235
ABZR87_RS20240: ABZR87_RS20240 - type VI secretion system contractile sheath small subunit, at 928,308 to 928,820
_RS20240
ABZR87_RS20245: ABZR87_RS20245 - hypothetical protein, at 928,855 to 929,442
_RS20245
Position (kb) 926
927
928
929 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 925.894 kb on + strand, within ABZR87_RS20225 at 925.895 kb on - strand, within ABZR87_RS20225 at 925.895 kb on - strand, within ABZR87_RS20225 at 925.895 kb on - strand, within ABZR87_RS20225 at 925.895 kb on - strand, within ABZR87_RS20225 at 925.948 kb on + strand, within ABZR87_RS20225 at 925.949 kb on - strand, within ABZR87_RS20225 at 925.949 kb on - strand, within ABZR87_RS20225 at 926.153 kb on + strand at 926.153 kb on + strand at 926.153 kb on + strand at 926.153 kb on + strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.161 kb on + strand at 926.161 kb on + strand at 926.310 kb on + strand, within ABZR87_RS20230 at 926.310 kb on + strand, within ABZR87_RS20230 at 926.311 kb on - strand, within ABZR87_RS20230 at 926.332 kb on - strand, within ABZR87_RS20230 at 926.424 kb on + strand, within ABZR87_RS20230 at 926.424 kb on + strand, within ABZR87_RS20230 at 926.508 kb on + strand, within ABZR87_RS20230 at 926.508 kb on + strand, within ABZR87_RS20230 at 926.508 kb on + strand, within ABZR87_RS20230 at 926.509 kb on - strand, within ABZR87_RS20230 at 926.712 kb on + strand at 926.712 kb on + strand at 926.712 kb on + strand at 926.712 kb on + strand at 926.713 kb on - strand at 926.713 kb on - strand at 926.716 kb on + strand at 926.717 kb on - strand at 926.717 kb on - strand at 926.719 kb on - strand at 926.726 kb on - strand at 926.726 kb on - strand at 926.726 kb on - strand at 926.726 kb on - strand at 926.743 kb on + strand at 926.743 kb on + strand at 926.743 kb on + strand at 926.743 kb on + strand at 926.743 kb on + strand at 926.758 kb on + strand at 926.758 kb on + strand at 926.759 kb on - strand at 926.790 kb on + strand at 926.790 kb on + strand at 926.832 kb on + strand at 926.833 kb on - strand at 926.928 kb on + strand at 926.928 kb on + strand at 926.928 kb on + strand at 926.928 kb on + strand at 926.929 kb on - strand at 926.929 kb on - strand at 926.929 kb on - strand at 927.030 kb on + strand, within ABZR87_RS20235 at 927.030 kb on + strand, within ABZR87_RS20235 at 927.031 kb on - strand, within ABZR87_RS20235 at 927.118 kb on - strand, within ABZR87_RS20235 at 927.118 kb on - strand, within ABZR87_RS20235 at 927.147 kb on + strand, within ABZR87_RS20235 at 927.147 kb on + strand, within ABZR87_RS20235 at 927.147 kb on + strand, within ABZR87_RS20235 at 927.148 kb on - strand, within ABZR87_RS20235 at 927.198 kb on + strand, within ABZR87_RS20235 at 927.199 kb on - strand, within ABZR87_RS20235 at 927.199 kb on - strand, within ABZR87_RS20235 at 927.243 kb on + strand, within ABZR87_RS20235 at 927.244 kb on - strand, within ABZR87_RS20235 at 927.495 kb on + strand, within ABZR87_RS20235 at 927.495 kb on + strand, within ABZR87_RS20235 at 927.495 kb on + strand, within ABZR87_RS20235 at 927.496 kb on - strand, within ABZR87_RS20235 at 927.496 kb on - strand, within ABZR87_RS20235 at 927.571 kb on - strand, within ABZR87_RS20235 at 927.612 kb on + strand, within ABZR87_RS20235 at 927.612 kb on + strand, within ABZR87_RS20235 at 927.612 kb on + strand, within ABZR87_RS20235 at 927.612 kb on + strand, within ABZR87_RS20235 at 927.612 kb on + strand, within ABZR87_RS20235 at 927.613 kb on - strand, within ABZR87_RS20235 at 927.655 kb on - strand, within ABZR87_RS20235 at 927.655 kb on - strand, within ABZR87_RS20235 at 927.798 kb on + strand, within ABZR87_RS20235 at 927.798 kb on + strand, within ABZR87_RS20235 at 927.798 kb on + strand, within ABZR87_RS20235 at 927.798 kb on + strand, within ABZR87_RS20235 at 927.798 kb on + strand, within ABZR87_RS20235 at 927.799 kb on - strand, within ABZR87_RS20235 at 927.799 kb on - strand, within ABZR87_RS20235 at 927.799 kb on - strand, within ABZR87_RS20235 at 927.799 kb on - strand, within ABZR87_RS20235 at 927.799 kb on - strand, within ABZR87_RS20235 at 927.799 kb on - strand, within ABZR87_RS20235 at 927.799 kb on - strand, within ABZR87_RS20235 at 927.799 kb on - strand, within ABZR87_RS20235 at 927.799 kb on - strand, within ABZR87_RS20235 at 927.799 kb on - strand, within ABZR87_RS20235 at 927.799 kb on - strand, within ABZR87_RS20235 at 927.828 kb on + strand, within ABZR87_RS20235 at 927.886 kb on - strand, within ABZR87_RS20235 at 927.886 kb on - strand, within ABZR87_RS20235 at 927.886 kb on - strand, within ABZR87_RS20235 at 928.014 kb on + strand, within ABZR87_RS20235 at 928.014 kb on + strand, within ABZR87_RS20235 at 928.015 kb on - strand, within ABZR87_RS20235 at 928.133 kb on + strand, within ABZR87_RS20235 at 928.133 kb on + strand, within ABZR87_RS20235 at 928.134 kb on - strand, within ABZR87_RS20235 at 928.134 kb on - strand, within ABZR87_RS20235 at 928.134 kb on - strand, within ABZR87_RS20235 at 928.753 kb on + strand, within ABZR87_RS20240 at 928.753 kb on + strand, within ABZR87_RS20240 at 928.753 kb on + strand, within ABZR87_RS20240 at 928.753 kb on + strand, within ABZR87_RS20240 at 928.754 kb on - strand, within ABZR87_RS20240 at 928.754 kb on - strand, within ABZR87_RS20240 at 928.754 kb on - strand, within ABZR87_RS20240 at 928.754 kb on - strand, within ABZR87_RS20240 at 928.754 kb on - strand, within ABZR87_RS20240 at 928.754 kb on - strand, within ABZR87_RS20240 at 928.754 kb on - strand, within ABZR87_RS20240 at 928.800 kb on + strand at 928.800 kb on + strand at 928.801 kb on - strand at 929.219 kb on + strand, within ABZR87_RS20245 at 929.220 kb on - strand, within ABZR87_RS20245 at 929.300 kb on + strand, within ABZR87_RS20245 at 929.301 kb on - strand, within ABZR87_RS20245 at 929.301 kb on - strand, within ABZR87_RS20245
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 925,894 + ABZR87_RS20225 0.45 -0.2 925,895 - ABZR87_RS20225 0.45 +0.9 925,895 - ABZR87_RS20225 0.45 -0.1 925,895 - ABZR87_RS20225 0.45 -0.1 925,895 - ABZR87_RS20225 0.45 +0.7 925,948 + ABZR87_RS20225 0.57 +0.0 925,949 - ABZR87_RS20225 0.57 -0.6 925,949 - ABZR87_RS20225 0.57 -0.3 926,153 + -1.4 926,153 + -0.8 926,153 + -2.3 926,153 + -1.4 926,154 - -0.1 926,154 - -1.0 926,154 - -0.0 926,154 - -0.3 926,154 - +1.1 926,154 - -0.2 926,161 + +0.3 926,161 + -1.6 926,310 + ABZR87_RS20230 0.17 -1.5 926,310 + ABZR87_RS20230 0.17 -1.3 926,311 - ABZR87_RS20230 0.18 +0.4 926,332 - ABZR87_RS20230 0.22 +0.5 926,424 + ABZR87_RS20230 0.40 +1.0 926,424 + ABZR87_RS20230 0.40 -1.6 926,508 + ABZR87_RS20230 0.57 -1.7 926,508 + ABZR87_RS20230 0.57 -1.7 926,508 + ABZR87_RS20230 0.57 +0.8 926,509 - ABZR87_RS20230 0.57 +0.7 926,712 + -0.9 926,712 + -0.2 926,712 + -1.3 926,712 + -4.0 926,713 - +0.0 926,713 - +1.7 926,716 + -1.4 926,717 - +0.8 926,717 - +0.3 926,719 - -0.7 926,726 - +0.1 926,726 - +0.3 926,726 - -0.5 926,726 - +0.6 926,743 + +0.2 926,743 + -1.8 926,743 + -2.6 926,743 + -2.7 926,743 + -1.4 926,758 + -0.5 926,758 + +0.1 926,759 - +0.5 926,790 + -0.2 926,790 + -2.6 926,832 + -1.0 926,833 - +0.3 926,928 + -1.2 926,928 + -2.2 926,928 + -1.7 926,928 + -1.3 926,929 - -0.0 926,929 - -0.4 926,929 - -0.4 927,030 + ABZR87_RS20235 0.13 +0.2 927,030 + ABZR87_RS20235 0.13 -2.3 927,031 - ABZR87_RS20235 0.13 +0.1 927,118 - ABZR87_RS20235 0.19 +0.2 927,118 - ABZR87_RS20235 0.19 +0.3 927,147 + ABZR87_RS20235 0.21 -1.3 927,147 + ABZR87_RS20235 0.21 -0.7 927,147 + ABZR87_RS20235 0.21 -1.8 927,148 - ABZR87_RS20235 0.21 -0.1 927,198 + ABZR87_RS20235 0.25 -2.1 927,199 - ABZR87_RS20235 0.25 -0.1 927,199 - ABZR87_RS20235 0.25 +0.5 927,243 + ABZR87_RS20235 0.28 +0.2 927,244 - ABZR87_RS20235 0.28 -0.1 927,495 + ABZR87_RS20235 0.45 -0.9 927,495 + ABZR87_RS20235 0.45 -3.4 927,495 + ABZR87_RS20235 0.45 -0.5 927,496 - ABZR87_RS20235 0.45 +0.9 927,496 - ABZR87_RS20235 0.45 +0.8 927,571 - ABZR87_RS20235 0.50 +0.2 927,612 + ABZR87_RS20235 0.53 -0.8 927,612 + ABZR87_RS20235 0.53 -1.8 927,612 + ABZR87_RS20235 0.53 -1.2 927,612 + ABZR87_RS20235 0.53 -1.9 927,612 + ABZR87_RS20235 0.53 -0.7 927,613 - ABZR87_RS20235 0.53 +0.1 927,655 - ABZR87_RS20235 0.55 +0.7 927,655 - ABZR87_RS20235 0.55 -0.9 927,798 + ABZR87_RS20235 0.65 +0.9 927,798 + ABZR87_RS20235 0.65 -0.6 927,798 + ABZR87_RS20235 0.65 -1.8 927,798 + ABZR87_RS20235 0.65 -1.4 927,798 + ABZR87_RS20235 0.65 -2.2 927,799 - ABZR87_RS20235 0.65 +0.6 927,799 - ABZR87_RS20235 0.65 +0.3 927,799 - ABZR87_RS20235 0.65 -0.3 927,799 - ABZR87_RS20235 0.65 +1.1 927,799 - ABZR87_RS20235 0.65 -0.6 927,799 - ABZR87_RS20235 0.65 -0.4 927,799 - ABZR87_RS20235 0.65 -0.6 927,799 - ABZR87_RS20235 0.65 -0.6 927,799 - ABZR87_RS20235 0.65 +0.4 927,799 - ABZR87_RS20235 0.65 -1.1 927,799 - ABZR87_RS20235 0.65 +0.0 927,828 + ABZR87_RS20235 0.67 -0.5 927,886 - ABZR87_RS20235 0.71 -0.4 927,886 - ABZR87_RS20235 0.71 -1.7 927,886 - ABZR87_RS20235 0.71 +1.1 928,014 + ABZR87_RS20235 0.80 -1.3 928,014 + ABZR87_RS20235 0.80 -1.1 928,015 - ABZR87_RS20235 0.80 +0.5 928,133 + ABZR87_RS20235 0.88 -0.8 928,133 + ABZR87_RS20235 0.88 -0.8 928,134 - ABZR87_RS20235 0.88 -0.1 928,134 - ABZR87_RS20235 0.88 -0.0 928,134 - ABZR87_RS20235 0.88 +0.9 928,753 + ABZR87_RS20240 0.87 -1.6 928,753 + ABZR87_RS20240 0.87 +1.3 928,753 + ABZR87_RS20240 0.87 -2.5 928,753 + ABZR87_RS20240 0.87 -0.2 928,754 - ABZR87_RS20240 0.87 +0.2 928,754 - ABZR87_RS20240 0.87 +1.1 928,754 - ABZR87_RS20240 0.87 +0.5 928,754 - ABZR87_RS20240 0.87 -0.4 928,754 - ABZR87_RS20240 0.87 -1.1 928,754 - ABZR87_RS20240 0.87 -0.5 928,754 - ABZR87_RS20240 0.87 +0.6 928,800 + -2.0 928,800 + -0.8 928,801 - -1.7 929,219 + ABZR87_RS20245 0.62 +0.9 929,220 - ABZR87_RS20245 0.62 +0.0 929,300 + ABZR87_RS20245 0.76 -0.9 929,301 - ABZR87_RS20245 0.76 +0.2 929,301 - ABZR87_RS20245 0.76 +0.2
Or see this region's nucleotide sequence