Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20030 and ABZR87_RS20035 are separated by 253 nucleotides ABZR87_RS20035 and ABZR87_RS20040 are separated by 28 nucleotides ABZR87_RS20040 and ABZR87_RS20045 are separated by 30 nucleotides
ABZR87_RS20030: ABZR87_RS20030 - PAS domain-containing sensor histidine kinase, at 871,757 to 873,145
_RS20030
ABZR87_RS20035: ABZR87_RS20035 - helix-turn-helix domain-containing protein, at 873,399 to 874,199
_RS20035
ABZR87_RS20040: ABZR87_RS20040 - BON domain-containing protein, at 874,228 to 874,875
_RS20040
ABZR87_RS20045: ABZR87_RS20045 - TraR/DksA family transcriptional regulator, at 874,906 to 875,268
_RS20045
Position (kb) 873
874
875 Strain fitness (log2 ratio) -2
-1
0
1 at 872.569 kb on + strand, within ABZR87_RS20030 at 872.570 kb on - strand, within ABZR87_RS20030 at 872.570 kb on - strand, within ABZR87_RS20030 at 872.570 kb on - strand, within ABZR87_RS20030 at 872.570 kb on - strand, within ABZR87_RS20030 at 872.677 kb on + strand, within ABZR87_RS20030 at 872.677 kb on + strand, within ABZR87_RS20030 at 872.677 kb on + strand, within ABZR87_RS20030 at 872.678 kb on - strand, within ABZR87_RS20030 at 872.875 kb on + strand, within ABZR87_RS20030 at 872.875 kb on + strand, within ABZR87_RS20030 at 872.876 kb on - strand, within ABZR87_RS20030 at 872.876 kb on - strand, within ABZR87_RS20030 at 872.892 kb on + strand, within ABZR87_RS20030 at 872.892 kb on + strand, within ABZR87_RS20030 at 873.014 kb on + strand at 873.138 kb on + strand at 873.138 kb on + strand at 873.138 kb on + strand at 873.138 kb on + strand at 873.139 kb on - strand at 873.139 kb on - strand at 873.139 kb on - strand at 873.139 kb on - strand at 873.139 kb on - strand at 873.139 kb on - strand at 873.139 kb on - strand at 873.161 kb on + strand at 873.161 kb on + strand at 873.162 kb on - strand at 873.162 kb on - strand at 873.162 kb on - strand at 873.162 kb on - strand at 873.164 kb on + strand at 873.164 kb on + strand at 873.164 kb on + strand at 873.164 kb on + strand at 873.164 kb on + strand at 873.165 kb on - strand at 873.165 kb on - strand at 873.165 kb on - strand at 873.168 kb on + strand at 873.168 kb on + strand at 873.168 kb on + strand at 873.168 kb on + strand at 873.168 kb on + strand at 873.168 kb on + strand at 873.168 kb on + strand at 873.168 kb on + strand at 873.168 kb on + strand at 873.168 kb on + strand at 873.169 kb on - strand at 873.169 kb on - strand at 873.169 kb on - strand at 873.169 kb on - strand at 873.169 kb on - strand at 873.169 kb on - strand at 873.169 kb on - strand at 873.169 kb on - strand at 873.169 kb on - strand at 873.169 kb on - strand at 873.291 kb on + strand at 873.300 kb on + strand at 873.300 kb on + strand at 873.372 kb on - strand at 873.372 kb on - strand at 873.372 kb on - strand at 873.416 kb on - strand at 873.416 kb on - strand at 873.416 kb on - strand at 873.416 kb on - strand at 873.416 kb on - strand at 873.675 kb on + strand, within ABZR87_RS20035 at 873.675 kb on + strand, within ABZR87_RS20035 at 873.676 kb on - strand, within ABZR87_RS20035 at 873.676 kb on - strand, within ABZR87_RS20035 at 874.026 kb on + strand, within ABZR87_RS20035 at 874.026 kb on + strand, within ABZR87_RS20035 at 874.027 kb on - strand, within ABZR87_RS20035 at 874.077 kb on + strand, within ABZR87_RS20035 at 874.078 kb on - strand, within ABZR87_RS20035 at 874.078 kb on - strand, within ABZR87_RS20035 at 874.332 kb on + strand, within ABZR87_RS20040 at 874.333 kb on - strand, within ABZR87_RS20040 at 874.333 kb on - strand, within ABZR87_RS20040 at 874.745 kb on + strand, within ABZR87_RS20040 at 874.745 kb on + strand, within ABZR87_RS20040 at 874.745 kb on + strand, within ABZR87_RS20040 at 874.745 kb on + strand, within ABZR87_RS20040 at 874.745 kb on + strand, within ABZR87_RS20040 at 874.746 kb on - strand, within ABZR87_RS20040 at 874.746 kb on - strand, within ABZR87_RS20040 at 874.876 kb on - strand at 874.894 kb on - strand at 874.894 kb on - strand at 874.894 kb on - strand at 875.018 kb on + strand, within ABZR87_RS20045 at 875.018 kb on + strand, within ABZR87_RS20045 at 875.018 kb on + strand, within ABZR87_RS20045 at 875.018 kb on + strand, within ABZR87_RS20045 at 875.018 kb on + strand, within ABZR87_RS20045 at 875.019 kb on - strand, within ABZR87_RS20045 at 875.019 kb on - strand, within ABZR87_RS20045 at 875.019 kb on - strand, within ABZR87_RS20045 at 875.034 kb on + strand, within ABZR87_RS20045 at 875.034 kb on + strand, within ABZR87_RS20045 at 875.034 kb on + strand, within ABZR87_RS20045 at 875.035 kb on - strand, within ABZR87_RS20045 at 875.035 kb on - strand, within ABZR87_RS20045 at 875.035 kb on - strand, within ABZR87_RS20045 at 875.035 kb on - strand, within ABZR87_RS20045
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 872,569 + ABZR87_RS20030 0.58 -0.9 872,570 - ABZR87_RS20030 0.59 -0.0 872,570 - ABZR87_RS20030 0.59 -0.3 872,570 - ABZR87_RS20030 0.59 -1.0 872,570 - ABZR87_RS20030 0.59 -0.4 872,677 + ABZR87_RS20030 0.66 -0.3 872,677 + ABZR87_RS20030 0.66 +0.4 872,677 + ABZR87_RS20030 0.66 -0.0 872,678 - ABZR87_RS20030 0.66 -0.8 872,875 + ABZR87_RS20030 0.80 +0.3 872,875 + ABZR87_RS20030 0.80 -0.1 872,876 - ABZR87_RS20030 0.81 -0.2 872,876 - ABZR87_RS20030 0.81 -0.9 872,892 + ABZR87_RS20030 0.82 -1.7 872,892 + ABZR87_RS20030 0.82 +0.1 873,014 + -0.2 873,138 + -1.0 873,138 + +0.2 873,138 + +0.6 873,138 + -0.8 873,139 - +0.4 873,139 - +0.2 873,139 - -0.2 873,139 - -0.3 873,139 - +0.6 873,139 - +0.6 873,139 - +1.4 873,161 + +0.8 873,161 + +0.7 873,162 - -0.4 873,162 - +0.1 873,162 - -2.0 873,162 - +0.7 873,164 + +0.5 873,164 + -2.2 873,164 + +0.8 873,164 + +0.0 873,164 + +0.1 873,165 - -0.2 873,165 - -0.6 873,165 - +0.1 873,168 + +0.7 873,168 + -0.6 873,168 + -0.5 873,168 + +1.2 873,168 + +0.2 873,168 + -0.1 873,168 + -0.1 873,168 + +1.0 873,168 + +1.1 873,168 + +1.5 873,169 - +0.0 873,169 - -0.9 873,169 - +0.3 873,169 - +0.9 873,169 - -0.2 873,169 - +0.1 873,169 - -0.9 873,169 - +0.1 873,169 - +0.1 873,169 - -2.0 873,291 + +0.3 873,300 + -2.2 873,300 + -0.9 873,372 - -0.7 873,372 - -0.1 873,372 - +0.9 873,416 - +1.6 873,416 - -1.4 873,416 - +0.2 873,416 - -0.3 873,416 - -0.3 873,675 + ABZR87_RS20035 0.34 -1.7 873,675 + ABZR87_RS20035 0.34 -1.4 873,676 - ABZR87_RS20035 0.35 -0.4 873,676 - ABZR87_RS20035 0.35 -2.0 874,026 + ABZR87_RS20035 0.78 +0.3 874,026 + ABZR87_RS20035 0.78 +0.1 874,027 - ABZR87_RS20035 0.78 -0.5 874,077 + ABZR87_RS20035 0.85 -1.6 874,078 - ABZR87_RS20035 0.85 -1.0 874,078 - ABZR87_RS20035 0.85 -1.1 874,332 + ABZR87_RS20040 0.16 -0.9 874,333 - ABZR87_RS20040 0.16 -0.4 874,333 - ABZR87_RS20040 0.16 +0.4 874,745 + ABZR87_RS20040 0.80 +0.6 874,745 + ABZR87_RS20040 0.80 -1.2 874,745 + ABZR87_RS20040 0.80 +0.6 874,745 + ABZR87_RS20040 0.80 -0.5 874,745 + ABZR87_RS20040 0.80 -2.3 874,746 - ABZR87_RS20040 0.80 +0.1 874,746 - ABZR87_RS20040 0.80 -0.5 874,876 - +0.8 874,894 - -1.4 874,894 - +0.5 874,894 - -1.6 875,018 + ABZR87_RS20045 0.31 +0.0 875,018 + ABZR87_RS20045 0.31 +0.7 875,018 + ABZR87_RS20045 0.31 +0.1 875,018 + ABZR87_RS20045 0.31 +0.6 875,018 + ABZR87_RS20045 0.31 -0.2 875,019 - ABZR87_RS20045 0.31 +1.0 875,019 - ABZR87_RS20045 0.31 +0.2 875,019 - ABZR87_RS20045 0.31 -0.8 875,034 + ABZR87_RS20045 0.35 -0.4 875,034 + ABZR87_RS20045 0.35 +0.3 875,034 + ABZR87_RS20045 0.35 +0.3 875,035 - ABZR87_RS20045 0.36 -0.4 875,035 - ABZR87_RS20045 0.36 -1.0 875,035 - ABZR87_RS20045 0.36 -0.2 875,035 - ABZR87_RS20045 0.36 -0.2
Or see this region's nucleotide sequence