Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19665 and ABZR87_RS19670 are separated by 76 nucleotides ABZR87_RS19670 and ABZR87_RS19675 are separated by 179 nucleotides ABZR87_RS19675 and ABZR87_RS19680 are separated by 350 nucleotides
ABZR87_RS19665: ABZR87_RS19665 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 786,658 to 788,181
_RS19665
ABZR87_RS19670: ABZR87_RS19670 - cold-shock protein, at 788,258 to 788,464
_RS19670
ABZR87_RS19675: ABZR87_RS19675 - cold-shock protein, at 788,644 to 788,847
_RS19675
ABZR87_RS19680: ABZR87_RS19680 - potassium transporter Kup, at 789,198 to 791,093
_RS19680
Position (kb) 788
789 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 787.690 kb on + strand, within ABZR87_RS19665 at 787.691 kb on - strand, within ABZR87_RS19665 at 787.691 kb on - strand, within ABZR87_RS19665 at 787.691 kb on - strand, within ABZR87_RS19665 at 787.822 kb on + strand, within ABZR87_RS19665 at 787.822 kb on + strand, within ABZR87_RS19665 at 787.822 kb on + strand, within ABZR87_RS19665 at 787.822 kb on + strand, within ABZR87_RS19665 at 787.822 kb on + strand, within ABZR87_RS19665 at 787.823 kb on - strand, within ABZR87_RS19665 at 787.823 kb on - strand, within ABZR87_RS19665 at 787.930 kb on + strand, within ABZR87_RS19665 at 787.930 kb on + strand, within ABZR87_RS19665 at 787.930 kb on + strand, within ABZR87_RS19665 at 788.074 kb on + strand at 788.098 kb on + strand at 788.107 kb on + strand at 788.108 kb on - strand at 788.179 kb on + strand at 788.179 kb on + strand at 788.179 kb on + strand at 788.179 kb on + strand at 788.180 kb on - strand at 788.189 kb on + strand at 788.189 kb on + strand at 788.189 kb on + strand at 788.225 kb on - strand at 788.261 kb on + strand at 788.261 kb on + strand at 788.261 kb on + strand at 788.261 kb on + strand at 788.262 kb on - strand at 788.262 kb on - strand at 788.262 kb on - strand at 788.310 kb on - strand, within ABZR87_RS19670 at 788.380 kb on + strand, within ABZR87_RS19670 at 788.430 kb on + strand, within ABZR87_RS19670 at 788.430 kb on + strand, within ABZR87_RS19670 at 788.430 kb on + strand, within ABZR87_RS19670 at 788.430 kb on + strand, within ABZR87_RS19670 at 788.541 kb on + strand at 788.542 kb on - strand at 788.578 kb on + strand at 788.578 kb on + strand at 788.579 kb on - strand at 788.579 kb on - strand at 788.645 kb on + strand at 788.797 kb on - strand, within ABZR87_RS19675 at 788.841 kb on + strand at 788.841 kb on + strand at 788.841 kb on + strand at 788.842 kb on - strand at 788.873 kb on + strand at 788.893 kb on + strand at 788.893 kb on + strand at 788.894 kb on - strand at 788.946 kb on + strand at 788.946 kb on + strand at 788.946 kb on + strand at 788.946 kb on + strand at 788.946 kb on + strand at 788.946 kb on + strand at 788.947 kb on - strand at 788.947 kb on - strand at 788.947 kb on - strand at 788.947 kb on - strand at 788.947 kb on - strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 789.101 kb on - strand at 789.101 kb on - strand at 789.101 kb on - strand at 789.303 kb on + strand at 789.303 kb on + strand at 789.303 kb on + strand at 789.303 kb on + strand at 789.303 kb on + strand at 789.304 kb on - strand at 789.304 kb on - strand at 789.304 kb on - strand at 789.417 kb on + strand, within ABZR87_RS19680 at 789.417 kb on + strand, within ABZR87_RS19680 at 789.417 kb on + strand, within ABZR87_RS19680 at 789.417 kb on + strand, within ABZR87_RS19680 at 789.417 kb on + strand, within ABZR87_RS19680 at 789.418 kb on - strand, within ABZR87_RS19680 at 789.418 kb on - strand, within ABZR87_RS19680 at 789.418 kb on - strand, within ABZR87_RS19680 at 789.418 kb on - strand, within ABZR87_RS19680 at 789.418 kb on - strand, within ABZR87_RS19680 at 789.562 kb on - strand, within ABZR87_RS19680 at 789.562 kb on - strand, within ABZR87_RS19680 at 789.578 kb on + strand, within ABZR87_RS19680 at 789.578 kb on + strand, within ABZR87_RS19680 at 789.578 kb on + strand, within ABZR87_RS19680 at 789.579 kb on - strand, within ABZR87_RS19680 at 789.579 kb on - strand, within ABZR87_RS19680 at 789.579 kb on - strand, within ABZR87_RS19680 at 789.826 kb on - strand, within ABZR87_RS19680 at 789.826 kb on - strand, within ABZR87_RS19680 at 789.826 kb on - strand, within ABZR87_RS19680 at 789.826 kb on - strand, within ABZR87_RS19680
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 787,690 + ABZR87_RS19665 0.68 -1.3 787,691 - ABZR87_RS19665 0.68 +0.0 787,691 - ABZR87_RS19665 0.68 -0.9 787,691 - ABZR87_RS19665 0.68 -0.2 787,822 + ABZR87_RS19665 0.76 +0.1 787,822 + ABZR87_RS19665 0.76 -0.5 787,822 + ABZR87_RS19665 0.76 -1.0 787,822 + ABZR87_RS19665 0.76 +0.5 787,822 + ABZR87_RS19665 0.76 -0.1 787,823 - ABZR87_RS19665 0.76 +0.0 787,823 - ABZR87_RS19665 0.76 +0.8 787,930 + ABZR87_RS19665 0.83 +0.1 787,930 + ABZR87_RS19665 0.83 +0.9 787,930 + ABZR87_RS19665 0.83 +0.5 788,074 + +0.1 788,098 + +0.2 788,107 + +1.1 788,108 - +0.1 788,179 + +0.5 788,179 + -0.5 788,179 + -0.6 788,179 + -1.5 788,180 - +0.8 788,189 + +0.9 788,189 + -0.6 788,189 + +0.4 788,225 - +1.1 788,261 + +0.5 788,261 + +0.3 788,261 + -0.6 788,261 + +0.1 788,262 - -0.1 788,262 - +2.4 788,262 - -0.6 788,310 - ABZR87_RS19670 0.25 +0.3 788,380 + ABZR87_RS19670 0.59 -1.0 788,430 + ABZR87_RS19670 0.83 -0.4 788,430 + ABZR87_RS19670 0.83 -0.3 788,430 + ABZR87_RS19670 0.83 +0.3 788,430 + ABZR87_RS19670 0.83 -0.3 788,541 + -0.2 788,542 - -1.1 788,578 + -0.1 788,578 + +0.5 788,579 - -0.3 788,579 - -0.5 788,645 + +0.5 788,797 - ABZR87_RS19675 0.75 -1.2 788,841 + -0.5 788,841 + -0.4 788,841 + -0.3 788,842 - +1.1 788,873 + +0.6 788,893 + -0.6 788,893 + +0.1 788,894 - -0.0 788,946 + -1.3 788,946 + -0.2 788,946 + +0.4 788,946 + -0.4 788,946 + -1.0 788,946 + -0.5 788,947 - +0.5 788,947 - -0.7 788,947 - -1.1 788,947 - -0.1 788,947 - -0.3 788,948 + -0.9 788,948 + -1.5 788,948 + -1.3 788,948 + +0.1 788,948 + -0.3 788,948 + -0.2 788,948 + +0.3 788,948 + -0.9 788,949 - -0.9 788,949 - +0.0 788,949 - -0.0 788,949 - +0.0 788,949 - +0.9 788,949 - -0.9 788,949 - +1.8 788,949 - -1.3 788,949 - +0.4 789,101 - +0.0 789,101 - +1.1 789,101 - -0.3 789,303 + -0.7 789,303 + -2.1 789,303 + -0.7 789,303 + +0.0 789,303 + +0.1 789,304 - -1.2 789,304 - +0.5 789,304 - +0.2 789,417 + ABZR87_RS19680 0.12 -1.1 789,417 + ABZR87_RS19680 0.12 -2.0 789,417 + ABZR87_RS19680 0.12 -0.5 789,417 + ABZR87_RS19680 0.12 +1.1 789,417 + ABZR87_RS19680 0.12 +1.0 789,418 - ABZR87_RS19680 0.12 -0.1 789,418 - ABZR87_RS19680 0.12 -2.8 789,418 - ABZR87_RS19680 0.12 -0.1 789,418 - ABZR87_RS19680 0.12 +0.0 789,418 - ABZR87_RS19680 0.12 -0.2 789,562 - ABZR87_RS19680 0.19 -1.9 789,562 - ABZR87_RS19680 0.19 -0.8 789,578 + ABZR87_RS19680 0.20 -2.0 789,578 + ABZR87_RS19680 0.20 -0.3 789,578 + ABZR87_RS19680 0.20 -0.1 789,579 - ABZR87_RS19680 0.20 -0.2 789,579 - ABZR87_RS19680 0.20 -0.3 789,579 - ABZR87_RS19680 0.20 +1.3 789,826 - ABZR87_RS19680 0.33 -0.5 789,826 - ABZR87_RS19680 0.33 -1.5 789,826 - ABZR87_RS19680 0.33 -1.6 789,826 - ABZR87_RS19680 0.33 -0.6
Or see this region's nucleotide sequence