Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19545 and ABZR87_RS19550 overlap by 8 nucleotides ABZR87_RS19550 and ABZR87_RS19555 are separated by 9 nucleotides
ABZR87_RS19545: ABZR87_RS19545 - CpaF family protein, at 757,184 to 758,539
_RS19545
ABZR87_RS19550: ABZR87_RS19550 - type II secretion system F family protein, at 758,532 to 759,458
_RS19550
ABZR87_RS19555: ABZR87_RS19555 - type II secretion system F family protein, at 759,468 to 760,457
_RS19555
Position (kb) 758
759
760 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 757.901 kb on + strand, within ABZR87_RS19545 at 757.902 kb on - strand, within ABZR87_RS19545 at 757.902 kb on - strand, within ABZR87_RS19545 at 758.129 kb on - strand, within ABZR87_RS19545 at 758.372 kb on + strand, within ABZR87_RS19545 at 758.373 kb on - strand, within ABZR87_RS19545 at 758.378 kb on + strand, within ABZR87_RS19545 at 758.379 kb on - strand, within ABZR87_RS19545 at 758.387 kb on + strand, within ABZR87_RS19545 at 758.388 kb on - strand, within ABZR87_RS19545 at 758.388 kb on - strand, within ABZR87_RS19545 at 758.537 kb on + strand at 758.537 kb on + strand at 758.537 kb on + strand at 758.537 kb on + strand at 758.538 kb on - strand at 758.679 kb on + strand, within ABZR87_RS19550 at 758.784 kb on + strand, within ABZR87_RS19550 at 758.785 kb on - strand, within ABZR87_RS19550 at 758.827 kb on + strand, within ABZR87_RS19550 at 758.828 kb on - strand, within ABZR87_RS19550 at 758.874 kb on + strand, within ABZR87_RS19550 at 758.874 kb on + strand, within ABZR87_RS19550 at 758.874 kb on + strand, within ABZR87_RS19550 at 758.875 kb on - strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.456 kb on + strand at 759.457 kb on - strand at 759.457 kb on - strand at 759.804 kb on + strand, within ABZR87_RS19555 at 759.805 kb on - strand, within ABZR87_RS19555 at 759.842 kb on + strand, within ABZR87_RS19555 at 759.842 kb on + strand, within ABZR87_RS19555 at 759.843 kb on - strand, within ABZR87_RS19555 at 759.843 kb on - strand, within ABZR87_RS19555 at 759.940 kb on - strand, within ABZR87_RS19555 at 759.950 kb on + strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 760.181 kb on + strand, within ABZR87_RS19555 at 760.223 kb on + strand, within ABZR87_RS19555 at 760.224 kb on - strand, within ABZR87_RS19555 at 760.224 kb on - strand, within ABZR87_RS19555 at 760.442 kb on + strand at 760.442 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 757,901 + ABZR87_RS19545 0.53 -0.5 757,902 - ABZR87_RS19545 0.53 -1.7 757,902 - ABZR87_RS19545 0.53 -1.8 758,129 - ABZR87_RS19545 0.70 -1.2 758,372 + ABZR87_RS19545 0.88 +0.2 758,373 - ABZR87_RS19545 0.88 -1.1 758,378 + ABZR87_RS19545 0.88 -1.1 758,379 - ABZR87_RS19545 0.88 -0.6 758,387 + ABZR87_RS19545 0.89 +0.9 758,388 - ABZR87_RS19545 0.89 -0.3 758,388 - ABZR87_RS19545 0.89 -0.4 758,537 + -0.2 758,537 + -1.0 758,537 + +2.1 758,537 + +0.9 758,538 - -0.5 758,679 + ABZR87_RS19550 0.16 -0.7 758,784 + ABZR87_RS19550 0.27 -1.8 758,785 - ABZR87_RS19550 0.27 -2.4 758,827 + ABZR87_RS19550 0.32 -0.7 758,828 - ABZR87_RS19550 0.32 -4.0 758,874 + ABZR87_RS19550 0.37 -0.5 758,874 + ABZR87_RS19550 0.37 -0.2 758,874 + ABZR87_RS19550 0.37 +0.1 758,875 - ABZR87_RS19550 0.37 -3.4 759,348 + ABZR87_RS19550 0.88 -1.1 759,348 + ABZR87_RS19550 0.88 -2.2 759,348 + ABZR87_RS19550 0.88 -1.7 759,348 + ABZR87_RS19550 0.88 -1.9 759,348 + ABZR87_RS19550 0.88 -1.2 759,348 + ABZR87_RS19550 0.88 +0.2 759,348 + ABZR87_RS19550 0.88 -1.4 759,349 - ABZR87_RS19550 0.88 -1.2 759,349 - ABZR87_RS19550 0.88 +0.3 759,349 - ABZR87_RS19550 0.88 -3.2 759,349 - ABZR87_RS19550 0.88 -1.4 759,349 - ABZR87_RS19550 0.88 -1.1 759,349 - ABZR87_RS19550 0.88 -1.1 759,349 - ABZR87_RS19550 0.88 +0.9 759,349 - ABZR87_RS19550 0.88 -1.5 759,456 + +1.8 759,457 - -1.5 759,457 - -2.4 759,804 + ABZR87_RS19555 0.34 -0.5 759,805 - ABZR87_RS19555 0.34 +0.3 759,842 + ABZR87_RS19555 0.38 -0.3 759,842 + ABZR87_RS19555 0.38 -0.7 759,843 - ABZR87_RS19555 0.38 -0.9 759,843 - ABZR87_RS19555 0.38 -0.2 759,940 - ABZR87_RS19555 0.48 -0.6 759,950 + ABZR87_RS19555 0.49 -0.3 759,951 - ABZR87_RS19555 0.49 -1.2 759,951 - ABZR87_RS19555 0.49 -0.3 759,951 - ABZR87_RS19555 0.49 -1.7 759,951 - ABZR87_RS19555 0.49 -1.2 759,951 - ABZR87_RS19555 0.49 -1.0 759,951 - ABZR87_RS19555 0.49 -1.0 760,181 + ABZR87_RS19555 0.72 -0.2 760,223 + ABZR87_RS19555 0.76 -0.6 760,224 - ABZR87_RS19555 0.76 -1.4 760,224 - ABZR87_RS19555 0.76 -1.1 760,442 + +0.7 760,442 + +1.6
Or see this region's nucleotide sequence