Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19505 and ABZR87_RS19510 are separated by 489 nucleotides ABZR87_RS19510 and ABZR87_RS19515 are separated by 566 nucleotides ABZR87_RS19515 and ABZR87_RS19520 are separated by 92 nucleotides
ABZR87_RS19505: ABZR87_RS19505 - collagen-like triple helix repeat-containing protein, at 748,507 to 749,991
_RS19505
ABZR87_RS19510: ABZR87_RS19510 - collagen-like triple helix repeat-containing protein, at 750,481 to 751,605
_RS19510
ABZR87_RS19515: ABZR87_RS19515 - Flp family type IVb pilin, at 752,172 to 752,351
_RS19515
ABZR87_RS19520: ABZR87_RS19520 - prepilin peptidase, at 752,444 to 752,908
_RS19520
Position (kb) 750
751
752 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 749.490 kb on + strand, within ABZR87_RS19505 at 749.490 kb on + strand, within ABZR87_RS19505 at 749.715 kb on + strand, within ABZR87_RS19505 at 749.716 kb on - strand, within ABZR87_RS19505 at 749.716 kb on - strand, within ABZR87_RS19505 at 749.865 kb on + strand at 749.866 kb on - strand at 749.985 kb on + strand at 749.985 kb on + strand at 749.985 kb on + strand at 749.986 kb on - strand at 749.986 kb on - strand at 749.986 kb on - strand at 750.008 kb on + strand at 750.008 kb on + strand at 750.009 kb on - strand at 750.021 kb on + strand at 750.022 kb on - strand at 750.022 kb on - strand at 750.022 kb on - strand at 750.097 kb on - strand at 750.108 kb on - strand at 750.184 kb on + strand at 750.184 kb on + strand at 750.184 kb on + strand at 750.184 kb on + strand at 750.185 kb on - strand at 750.188 kb on + strand at 750.189 kb on - strand at 750.220 kb on + strand at 750.228 kb on + strand at 750.228 kb on + strand at 750.228 kb on + strand at 750.243 kb on + strand at 750.243 kb on + strand at 750.243 kb on + strand at 750.243 kb on + strand at 750.243 kb on + strand at 750.244 kb on - strand at 750.244 kb on - strand at 750.244 kb on - strand at 750.296 kb on + strand at 750.330 kb on + strand at 750.330 kb on + strand at 750.330 kb on + strand at 750.330 kb on + strand at 750.330 kb on + strand at 750.330 kb on + strand at 750.330 kb on + strand at 750.330 kb on + strand at 750.331 kb on - strand at 750.331 kb on - strand at 750.331 kb on - strand at 750.331 kb on - strand at 750.331 kb on - strand at 750.331 kb on - strand at 750.331 kb on - strand at 750.350 kb on + strand at 750.386 kb on + strand at 750.386 kb on + strand at 750.386 kb on + strand at 750.387 kb on - strand at 750.434 kb on - strand at 750.496 kb on + strand at 750.606 kb on + strand, within ABZR87_RS19510 at 750.606 kb on + strand, within ABZR87_RS19510 at 750.607 kb on - strand, within ABZR87_RS19510 at 750.607 kb on - strand, within ABZR87_RS19510 at 750.607 kb on - strand, within ABZR87_RS19510 at 751.026 kb on - strand, within ABZR87_RS19510 at 751.164 kb on + strand, within ABZR87_RS19510 at 751.164 kb on + strand, within ABZR87_RS19510 at 751.164 kb on + strand, within ABZR87_RS19510 at 751.165 kb on - strand, within ABZR87_RS19510 at 751.256 kb on + strand, within ABZR87_RS19510 at 751.257 kb on - strand, within ABZR87_RS19510 at 751.567 kb on - strand at 751.567 kb on - strand at 751.610 kb on + strand at 751.610 kb on + strand at 751.610 kb on + strand at 751.610 kb on + strand at 751.610 kb on + strand at 751.610 kb on + strand at 751.610 kb on + strand at 751.610 kb on + strand at 751.611 kb on - strand at 751.611 kb on - strand at 751.714 kb on + strand at 751.734 kb on + strand at 751.734 kb on + strand at 751.734 kb on + strand at 751.735 kb on - strand at 751.758 kb on + strand at 751.768 kb on - strand at 751.772 kb on + strand at 751.811 kb on + strand at 751.854 kb on - strand at 751.878 kb on + strand at 751.878 kb on + strand at 751.879 kb on - strand at 751.899 kb on + strand at 751.908 kb on + strand at 751.908 kb on + strand at 751.909 kb on - strand at 751.909 kb on - strand at 751.909 kb on - strand at 751.909 kb on - strand at 751.909 kb on - strand at 751.909 kb on - strand at 751.909 kb on - strand at 751.909 kb on - strand at 751.977 kb on + strand at 751.978 kb on - strand at 752.008 kb on + strand at 752.057 kb on + strand at 752.057 kb on + strand at 752.057 kb on + strand at 752.074 kb on + strand at 752.075 kb on - strand at 752.082 kb on - strand at 752.084 kb on + strand at 752.085 kb on - strand at 752.092 kb on - strand at 752.092 kb on - strand at 752.229 kb on + strand, within ABZR87_RS19515 at 752.339 kb on + strand at 752.339 kb on + strand at 752.340 kb on - strand at 752.340 kb on - strand at 752.350 kb on - strand at 752.374 kb on + strand at 752.374 kb on + strand at 752.374 kb on + strand at 752.397 kb on + strand at 752.397 kb on + strand at 752.397 kb on + strand at 752.398 kb on - strand at 752.398 kb on - strand at 752.398 kb on - strand at 752.398 kb on - strand at 752.398 kb on - strand at 752.416 kb on + strand at 752.416 kb on + strand at 752.416 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.420 kb on - strand at 752.420 kb on - strand at 752.420 kb on - strand at 752.420 kb on - strand at 752.420 kb on - strand at 752.420 kb on - strand at 752.420 kb on - strand at 752.522 kb on + strand, within ABZR87_RS19520 at 752.523 kb on - strand, within ABZR87_RS19520 at 752.523 kb on - strand, within ABZR87_RS19520 at 752.582 kb on + strand, within ABZR87_RS19520 at 752.582 kb on + strand, within ABZR87_RS19520 at 752.582 kb on + strand, within ABZR87_RS19520 at 752.582 kb on + strand, within ABZR87_RS19520 at 752.582 kb on + strand, within ABZR87_RS19520 at 752.582 kb on + strand, within ABZR87_RS19520 at 752.583 kb on - strand, within ABZR87_RS19520 at 752.583 kb on - strand, within ABZR87_RS19520 at 752.583 kb on - strand, within ABZR87_RS19520 at 752.583 kb on - strand, within ABZR87_RS19520 at 752.583 kb on - strand, within ABZR87_RS19520 at 752.583 kb on - strand, within ABZR87_RS19520 at 752.583 kb on - strand, within ABZR87_RS19520
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 749,490 + ABZR87_RS19505 0.66 +0.9 749,490 + ABZR87_RS19505 0.66 -0.2 749,715 + ABZR87_RS19505 0.81 -0.7 749,716 - ABZR87_RS19505 0.81 +0.4 749,716 - ABZR87_RS19505 0.81 -1.5 749,865 + -2.4 749,866 - -0.4 749,985 + -0.2 749,985 + -0.2 749,985 + +1.1 749,986 - -0.7 749,986 - -0.9 749,986 - -1.1 750,008 + -0.5 750,008 + -0.2 750,009 - -0.4 750,021 + -0.6 750,022 - -0.8 750,022 - -0.9 750,022 - -0.4 750,097 - -0.9 750,108 - -1.2 750,184 + +1.0 750,184 + -1.0 750,184 + -0.0 750,184 + +0.1 750,185 - -1.8 750,188 + -2.3 750,189 - -1.1 750,220 + -1.9 750,228 + +0.1 750,228 + -1.2 750,228 + -0.8 750,243 + -1.6 750,243 + -0.6 750,243 + -0.5 750,243 + -1.9 750,243 + -0.9 750,244 - -1.4 750,244 - -2.9 750,244 - -3.2 750,296 + -0.9 750,330 + -0.5 750,330 + -1.4 750,330 + -1.9 750,330 + -0.9 750,330 + -2.9 750,330 + -3.1 750,330 + -0.7 750,330 + -0.3 750,331 - +1.1 750,331 - +0.7 750,331 - -0.1 750,331 - -0.3 750,331 - -0.2 750,331 - -0.9 750,331 - -1.9 750,350 + -1.1 750,386 + -0.6 750,386 + +1.2 750,386 + -1.2 750,387 - -0.9 750,434 - -1.1 750,496 + -0.7 750,606 + ABZR87_RS19510 0.11 -1.2 750,606 + ABZR87_RS19510 0.11 -1.6 750,607 - ABZR87_RS19510 0.11 -0.2 750,607 - ABZR87_RS19510 0.11 +2.1 750,607 - ABZR87_RS19510 0.11 -0.4 751,026 - ABZR87_RS19510 0.48 -0.7 751,164 + ABZR87_RS19510 0.61 -1.9 751,164 + ABZR87_RS19510 0.61 -1.5 751,164 + ABZR87_RS19510 0.61 -1.1 751,165 - ABZR87_RS19510 0.61 -0.2 751,256 + ABZR87_RS19510 0.69 -0.8 751,257 - ABZR87_RS19510 0.69 -0.1 751,567 - -1.6 751,567 - -0.8 751,610 + +0.3 751,610 + -0.5 751,610 + +0.9 751,610 + +1.7 751,610 + +0.7 751,610 + +0.0 751,610 + -1.1 751,610 + -0.5 751,611 - +0.3 751,611 - -0.3 751,714 + +0.8 751,734 + +1.5 751,734 + +1.5 751,734 + +2.1 751,735 - -2.0 751,758 + +0.8 751,768 - -1.7 751,772 + +1.0 751,811 + +2.4 751,854 - -0.4 751,878 + -0.8 751,878 + +0.2 751,879 - -1.2 751,899 + -0.2 751,908 + +1.1 751,908 + -1.5 751,909 - -1.9 751,909 - -2.9 751,909 - -0.7 751,909 - -2.2 751,909 - -0.9 751,909 - -1.9 751,909 - +0.1 751,909 - -2.0 751,977 + -2.3 751,978 - -1.2 752,008 + -0.8 752,057 + -0.0 752,057 + -0.9 752,057 + +0.6 752,074 + -1.1 752,075 - -1.7 752,082 - -1.9 752,084 + -0.1 752,085 - -1.5 752,092 - -0.6 752,092 - -2.3 752,229 + ABZR87_RS19515 0.32 -1.5 752,339 + +0.5 752,339 + -0.8 752,340 - -0.5 752,340 - -0.5 752,350 - -1.4 752,374 + -1.1 752,374 + -1.5 752,374 + -3.4 752,397 + -0.1 752,397 + +1.1 752,397 + -1.1 752,398 - -0.1 752,398 - -2.8 752,398 - -0.1 752,398 - -0.9 752,398 - -0.6 752,416 + -1.2 752,416 + -0.0 752,416 + -0.4 752,419 + -0.8 752,419 + -1.4 752,419 + -1.9 752,419 + -1.2 752,419 + -0.9 752,419 + -0.8 752,419 + -1.0 752,419 + -2.9 752,419 + +0.2 752,419 + -0.1 752,420 - -1.3 752,420 - -2.0 752,420 - -2.1 752,420 - -0.1 752,420 - -0.6 752,420 - -0.3 752,420 - -1.7 752,522 + ABZR87_RS19520 0.17 +0.9 752,523 - ABZR87_RS19520 0.17 -0.7 752,523 - ABZR87_RS19520 0.17 -0.7 752,582 + ABZR87_RS19520 0.30 -1.5 752,582 + ABZR87_RS19520 0.30 -1.4 752,582 + ABZR87_RS19520 0.30 -0.3 752,582 + ABZR87_RS19520 0.30 -1.1 752,582 + ABZR87_RS19520 0.30 -2.1 752,582 + ABZR87_RS19520 0.30 -0.1 752,583 - ABZR87_RS19520 0.30 -1.1 752,583 - ABZR87_RS19520 0.30 +1.6 752,583 - ABZR87_RS19520 0.30 -1.2 752,583 - ABZR87_RS19520 0.30 -0.7 752,583 - ABZR87_RS19520 0.30 -0.7 752,583 - ABZR87_RS19520 0.30 -1.8 752,583 - ABZR87_RS19520 0.30 -0.1
Or see this region's nucleotide sequence