Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19125 and ABZR87_RS19130 are separated by 269 nucleotides ABZR87_RS19130 and ABZR87_RS19135 are separated by 292 nucleotides
ABZR87_RS19125: ABZR87_RS19125 - penicillin acylase family protein, at 651,843 to 654,272
_RS19125
ABZR87_RS19130: ABZR87_RS19130 - ATP-binding protein, at 654,542 to 656,437
_RS19130
ABZR87_RS19135: ABZR87_RS19135 - MFS transporter, at 656,730 to 658,028
_RS19135
Position (kb) 654
655
656
657 Strain fitness (log2 ratio) -2
-1
0
1 at 653.797 kb on + strand, within ABZR87_RS19125 at 653.797 kb on + strand, within ABZR87_RS19125 at 653.798 kb on - strand, within ABZR87_RS19125 at 653.857 kb on + strand, within ABZR87_RS19125 at 653.857 kb on + strand, within ABZR87_RS19125 at 653.857 kb on + strand, within ABZR87_RS19125 at 653.858 kb on - strand, within ABZR87_RS19125 at 653.858 kb on - strand, within ABZR87_RS19125 at 653.858 kb on - strand, within ABZR87_RS19125 at 653.911 kb on + strand, within ABZR87_RS19125 at 653.912 kb on - strand, within ABZR87_RS19125 at 653.945 kb on - strand, within ABZR87_RS19125 at 653.980 kb on + strand, within ABZR87_RS19125 at 653.981 kb on - strand, within ABZR87_RS19125 at 654.106 kb on + strand at 654.106 kb on + strand at 654.106 kb on + strand at 654.106 kb on + strand at 654.107 kb on - strand at 654.107 kb on - strand at 654.107 kb on - strand at 654.107 kb on - strand at 654.107 kb on - strand at 654.156 kb on + strand at 654.165 kb on + strand at 654.347 kb on - strand at 654.347 kb on - strand at 654.427 kb on + strand at 654.428 kb on - strand at 654.428 kb on - strand at 654.466 kb on + strand at 654.466 kb on + strand at 654.851 kb on + strand, within ABZR87_RS19130 at 654.873 kb on + strand, within ABZR87_RS19130 at 654.874 kb on - strand, within ABZR87_RS19130 at 655.186 kb on + strand, within ABZR87_RS19130 at 655.187 kb on - strand, within ABZR87_RS19130 at 655.593 kb on + strand, within ABZR87_RS19130 at 655.593 kb on + strand, within ABZR87_RS19130 at 655.848 kb on + strand, within ABZR87_RS19130 at 655.849 kb on - strand, within ABZR87_RS19130 at 655.849 kb on - strand, within ABZR87_RS19130 at 656.289 kb on + strand at 656.290 kb on - strand at 656.328 kb on + strand at 656.329 kb on - strand at 656.364 kb on + strand at 656.364 kb on + strand at 656.364 kb on + strand at 656.365 kb on - strand at 656.365 kb on - strand at 656.365 kb on - strand at 656.994 kb on + strand, within ABZR87_RS19135 at 656.995 kb on - strand, within ABZR87_RS19135 at 657.087 kb on + strand, within ABZR87_RS19135 at 657.172 kb on - strand, within ABZR87_RS19135 at 657.256 kb on + strand, within ABZR87_RS19135 at 657.429 kb on + strand, within ABZR87_RS19135 at 657.429 kb on + strand, within ABZR87_RS19135 at 657.430 kb on - strand, within ABZR87_RS19135 at 657.430 kb on - strand, within ABZR87_RS19135 at 657.430 kb on - strand, within ABZR87_RS19135 at 657.430 kb on - strand, within ABZR87_RS19135
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 653,797 + ABZR87_RS19125 0.80 -1.5 653,797 + ABZR87_RS19125 0.80 -0.3 653,798 - ABZR87_RS19125 0.80 -0.4 653,857 + ABZR87_RS19125 0.83 -0.4 653,857 + ABZR87_RS19125 0.83 -1.0 653,857 + ABZR87_RS19125 0.83 -1.0 653,858 - ABZR87_RS19125 0.83 +0.0 653,858 - ABZR87_RS19125 0.83 +0.5 653,858 - ABZR87_RS19125 0.83 +0.1 653,911 + ABZR87_RS19125 0.85 -1.2 653,912 - ABZR87_RS19125 0.85 +0.9 653,945 - ABZR87_RS19125 0.87 -2.0 653,980 + ABZR87_RS19125 0.88 +0.4 653,981 - ABZR87_RS19125 0.88 +0.3 654,106 + -2.0 654,106 + +0.3 654,106 + +0.0 654,106 + +0.2 654,107 - -1.4 654,107 - +0.0 654,107 - -1.2 654,107 - -0.2 654,107 - -0.1 654,156 + +0.7 654,165 + +0.3 654,347 - +1.1 654,347 - -0.0 654,427 + -0.3 654,428 - +0.3 654,428 - +0.1 654,466 + -1.1 654,466 + -0.1 654,851 + ABZR87_RS19130 0.16 -1.7 654,873 + ABZR87_RS19130 0.17 -0.5 654,874 - ABZR87_RS19130 0.18 -1.4 655,186 + ABZR87_RS19130 0.34 -1.7 655,187 - ABZR87_RS19130 0.34 -1.1 655,593 + ABZR87_RS19130 0.55 -1.4 655,593 + ABZR87_RS19130 0.55 -0.1 655,848 + ABZR87_RS19130 0.69 -1.1 655,849 - ABZR87_RS19130 0.69 -1.1 655,849 - ABZR87_RS19130 0.69 -0.4 656,289 + +0.9 656,290 - -0.1 656,328 + -1.1 656,329 - +0.9 656,364 + -0.3 656,364 + -1.4 656,364 + -1.1 656,365 - -1.3 656,365 - -0.4 656,365 - +1.5 656,994 + ABZR87_RS19135 0.20 -0.9 656,995 - ABZR87_RS19135 0.20 +0.3 657,087 + ABZR87_RS19135 0.27 -0.5 657,172 - ABZR87_RS19135 0.34 -0.4 657,256 + ABZR87_RS19135 0.40 -2.4 657,429 + ABZR87_RS19135 0.54 -0.5 657,429 + ABZR87_RS19135 0.54 -0.8 657,430 - ABZR87_RS19135 0.54 +0.1 657,430 - ABZR87_RS19135 0.54 +0.7 657,430 - ABZR87_RS19135 0.54 +1.3 657,430 - ABZR87_RS19135 0.54 +1.4
Or see this region's nucleotide sequence