Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19130

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19125 and ABZR87_RS19130 are separated by 269 nucleotidesABZR87_RS19130 and ABZR87_RS19135 are separated by 292 nucleotides ABZR87_RS19125: ABZR87_RS19125 - penicillin acylase family protein, at 651,843 to 654,272 _RS19125 ABZR87_RS19130: ABZR87_RS19130 - ATP-binding protein, at 654,542 to 656,437 _RS19130 ABZR87_RS19135: ABZR87_RS19135 - MFS transporter, at 656,730 to 658,028 _RS19135 Position (kb) 654 655 656 657Strain fitness (log2 ratio) -2 -1 0 1at 653.797 kb on + strand, within ABZR87_RS19125at 653.797 kb on + strand, within ABZR87_RS19125at 653.798 kb on - strand, within ABZR87_RS19125at 653.857 kb on + strand, within ABZR87_RS19125at 653.857 kb on + strand, within ABZR87_RS19125at 653.857 kb on + strand, within ABZR87_RS19125at 653.858 kb on - strand, within ABZR87_RS19125at 653.858 kb on - strand, within ABZR87_RS19125at 653.858 kb on - strand, within ABZR87_RS19125at 653.911 kb on + strand, within ABZR87_RS19125at 653.912 kb on - strand, within ABZR87_RS19125at 653.945 kb on - strand, within ABZR87_RS19125at 653.980 kb on + strand, within ABZR87_RS19125at 653.981 kb on - strand, within ABZR87_RS19125at 654.106 kb on + strandat 654.106 kb on + strandat 654.106 kb on + strandat 654.106 kb on + strandat 654.107 kb on - strandat 654.107 kb on - strandat 654.107 kb on - strandat 654.107 kb on - strandat 654.107 kb on - strandat 654.156 kb on + strandat 654.165 kb on + strandat 654.347 kb on - strandat 654.347 kb on - strandat 654.427 kb on + strandat 654.428 kb on - strandat 654.428 kb on - strandat 654.466 kb on + strandat 654.466 kb on + strandat 654.851 kb on + strand, within ABZR87_RS19130at 654.873 kb on + strand, within ABZR87_RS19130at 654.874 kb on - strand, within ABZR87_RS19130at 655.186 kb on + strand, within ABZR87_RS19130at 655.187 kb on - strand, within ABZR87_RS19130at 655.593 kb on + strand, within ABZR87_RS19130at 655.593 kb on + strand, within ABZR87_RS19130at 655.848 kb on + strand, within ABZR87_RS19130at 655.849 kb on - strand, within ABZR87_RS19130at 655.849 kb on - strand, within ABZR87_RS19130at 656.289 kb on + strandat 656.290 kb on - strandat 656.328 kb on + strandat 656.329 kb on - strandat 656.364 kb on + strandat 656.364 kb on + strandat 656.364 kb on + strandat 656.365 kb on - strandat 656.365 kb on - strandat 656.365 kb on - strandat 656.994 kb on + strand, within ABZR87_RS19135at 656.995 kb on - strand, within ABZR87_RS19135at 657.087 kb on + strand, within ABZR87_RS19135at 657.172 kb on - strand, within ABZR87_RS19135at 657.256 kb on + strand, within ABZR87_RS19135at 657.429 kb on + strand, within ABZR87_RS19135at 657.429 kb on + strand, within ABZR87_RS19135at 657.430 kb on - strand, within ABZR87_RS19135at 657.430 kb on - strand, within ABZR87_RS19135at 657.430 kb on - strand, within ABZR87_RS19135at 657.430 kb on - strand, within ABZR87_RS19135

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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653,797 + ABZR87_RS19125 0.80 -1.5
653,797 + ABZR87_RS19125 0.80 -0.3
653,798 - ABZR87_RS19125 0.80 -0.4
653,857 + ABZR87_RS19125 0.83 -0.4
653,857 + ABZR87_RS19125 0.83 -1.0
653,857 + ABZR87_RS19125 0.83 -1.0
653,858 - ABZR87_RS19125 0.83 +0.0
653,858 - ABZR87_RS19125 0.83 +0.5
653,858 - ABZR87_RS19125 0.83 +0.1
653,911 + ABZR87_RS19125 0.85 -1.2
653,912 - ABZR87_RS19125 0.85 +0.9
653,945 - ABZR87_RS19125 0.87 -2.0
653,980 + ABZR87_RS19125 0.88 +0.4
653,981 - ABZR87_RS19125 0.88 +0.3
654,106 + -2.0
654,106 + +0.3
654,106 + +0.0
654,106 + +0.2
654,107 - -1.4
654,107 - +0.0
654,107 - -1.2
654,107 - -0.2
654,107 - -0.1
654,156 + +0.7
654,165 + +0.3
654,347 - +1.1
654,347 - -0.0
654,427 + -0.3
654,428 - +0.3
654,428 - +0.1
654,466 + -1.1
654,466 + -0.1
654,851 + ABZR87_RS19130 0.16 -1.7
654,873 + ABZR87_RS19130 0.17 -0.5
654,874 - ABZR87_RS19130 0.18 -1.4
655,186 + ABZR87_RS19130 0.34 -1.7
655,187 - ABZR87_RS19130 0.34 -1.1
655,593 + ABZR87_RS19130 0.55 -1.4
655,593 + ABZR87_RS19130 0.55 -0.1
655,848 + ABZR87_RS19130 0.69 -1.1
655,849 - ABZR87_RS19130 0.69 -1.1
655,849 - ABZR87_RS19130 0.69 -0.4
656,289 + +0.9
656,290 - -0.1
656,328 + -1.1
656,329 - +0.9
656,364 + -0.3
656,364 + -1.4
656,364 + -1.1
656,365 - -1.3
656,365 - -0.4
656,365 - +1.5
656,994 + ABZR87_RS19135 0.20 -0.9
656,995 - ABZR87_RS19135 0.20 +0.3
657,087 + ABZR87_RS19135 0.27 -0.5
657,172 - ABZR87_RS19135 0.34 -0.4
657,256 + ABZR87_RS19135 0.40 -2.4
657,429 + ABZR87_RS19135 0.54 -0.5
657,429 + ABZR87_RS19135 0.54 -0.8
657,430 - ABZR87_RS19135 0.54 +0.1
657,430 - ABZR87_RS19135 0.54 +0.7
657,430 - ABZR87_RS19135 0.54 +1.3
657,430 - ABZR87_RS19135 0.54 +1.4

Or see this region's nucleotide sequence