Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18835 and ABZR87_RS18840 overlap by 4 nucleotides ABZR87_RS18840 and ABZR87_RS18845 are separated by 15 nucleotides
ABZR87_RS18835: ABZR87_RS18835 - cytochrome d ubiquinol oxidase subunit II, at 578,422 to 579,453
_RS18835
ABZR87_RS18840: ABZR87_RS18840 - cytochrome ubiquinol oxidase subunit I, at 579,450 to 580,838
_RS18840
ABZR87_RS18845: ABZR87_RS18845 - GbsR/MarR family transcriptional regulator, at 580,854 to 581,414
_RS18845
Position (kb) 579
580
581 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 578.465 kb on + strand at 578.466 kb on - strand at 578.466 kb on - strand at 578.471 kb on + strand at 578.471 kb on + strand at 578.472 kb on - strand at 578.472 kb on - strand at 578.472 kb on - strand at 578.481 kb on - strand at 578.600 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.020 kb on + strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.021 kb on - strand, within ABZR87_RS18835 at 579.022 kb on + strand, within ABZR87_RS18835 at 579.023 kb on - strand, within ABZR87_RS18835 at 579.023 kb on - strand, within ABZR87_RS18835 at 579.071 kb on + strand, within ABZR87_RS18835 at 579.071 kb on + strand, within ABZR87_RS18835 at 579.071 kb on + strand, within ABZR87_RS18835 at 579.072 kb on - strand, within ABZR87_RS18835 at 579.072 kb on - strand, within ABZR87_RS18835 at 579.072 kb on - strand, within ABZR87_RS18835 at 579.072 kb on - strand, within ABZR87_RS18835 at 579.072 kb on - strand, within ABZR87_RS18835 at 579.179 kb on + strand, within ABZR87_RS18835 at 579.180 kb on - strand, within ABZR87_RS18835 at 579.180 kb on - strand, within ABZR87_RS18835 at 579.180 kb on - strand, within ABZR87_RS18835 at 579.350 kb on + strand at 579.368 kb on + strand at 579.368 kb on + strand at 579.368 kb on + strand at 579.368 kb on + strand at 579.368 kb on + strand at 579.369 kb on - strand at 579.565 kb on + strand at 579.565 kb on + strand at 579.565 kb on + strand at 579.566 kb on - strand at 579.566 kb on - strand at 579.583 kb on + strand at 579.583 kb on + strand at 579.604 kb on + strand, within ABZR87_RS18840 at 579.604 kb on + strand, within ABZR87_RS18840 at 579.604 kb on + strand, within ABZR87_RS18840 at 579.612 kb on + strand, within ABZR87_RS18840 at 579.612 kb on + strand, within ABZR87_RS18840 at 579.612 kb on + strand, within ABZR87_RS18840 at 579.612 kb on + strand, within ABZR87_RS18840 at 579.613 kb on - strand, within ABZR87_RS18840 at 579.616 kb on + strand, within ABZR87_RS18840 at 579.617 kb on - strand, within ABZR87_RS18840 at 579.688 kb on + strand, within ABZR87_RS18840 at 579.689 kb on - strand, within ABZR87_RS18840 at 579.689 kb on - strand, within ABZR87_RS18840 at 579.724 kb on + strand, within ABZR87_RS18840 at 579.724 kb on + strand, within ABZR87_RS18840 at 579.724 kb on + strand, within ABZR87_RS18840 at 579.724 kb on + strand, within ABZR87_RS18840 at 579.724 kb on + strand, within ABZR87_RS18840 at 579.725 kb on - strand, within ABZR87_RS18840 at 579.725 kb on - strand, within ABZR87_RS18840 at 579.725 kb on - strand, within ABZR87_RS18840 at 579.725 kb on - strand, within ABZR87_RS18840 at 579.961 kb on + strand, within ABZR87_RS18840 at 579.961 kb on + strand, within ABZR87_RS18840 at 580.229 kb on - strand, within ABZR87_RS18840 at 580.367 kb on - strand, within ABZR87_RS18840 at 580.457 kb on + strand, within ABZR87_RS18840 at 580.458 kb on - strand, within ABZR87_RS18840 at 580.544 kb on - strand, within ABZR87_RS18840 at 580.565 kb on + strand, within ABZR87_RS18840 at 580.566 kb on - strand, within ABZR87_RS18840 at 580.566 kb on - strand, within ABZR87_RS18840 at 580.583 kb on + strand, within ABZR87_RS18840 at 580.583 kb on + strand, within ABZR87_RS18840 at 580.583 kb on + strand, within ABZR87_RS18840 at 580.584 kb on - strand, within ABZR87_RS18840 at 580.585 kb on + strand, within ABZR87_RS18840 at 580.586 kb on - strand, within ABZR87_RS18840 at 580.586 kb on - strand, within ABZR87_RS18840 at 580.681 kb on + strand, within ABZR87_RS18840 at 580.682 kb on - strand, within ABZR87_RS18840 at 580.790 kb on + strand at 580.791 kb on - strand at 580.791 kb on - strand at 580.855 kb on + strand at 580.855 kb on + strand at 580.856 kb on - strand at 580.856 kb on - strand at 580.910 kb on + strand, within ABZR87_RS18845 at 580.910 kb on + strand, within ABZR87_RS18845 at 580.910 kb on + strand, within ABZR87_RS18845 at 580.910 kb on + strand, within ABZR87_RS18845 at 580.910 kb on + strand, within ABZR87_RS18845 at 580.910 kb on + strand, within ABZR87_RS18845 at 580.910 kb on + strand, within ABZR87_RS18845 at 580.911 kb on - strand, within ABZR87_RS18845 at 580.911 kb on - strand, within ABZR87_RS18845 at 580.911 kb on - strand, within ABZR87_RS18845 at 580.911 kb on - strand, within ABZR87_RS18845 at 580.911 kb on - strand, within ABZR87_RS18845 at 581.008 kb on + strand, within ABZR87_RS18845 at 581.008 kb on + strand, within ABZR87_RS18845 at 581.008 kb on + strand, within ABZR87_RS18845 at 581.009 kb on - strand, within ABZR87_RS18845 at 581.009 kb on - strand, within ABZR87_RS18845 at 581.009 kb on - strand, within ABZR87_RS18845 at 581.009 kb on - strand, within ABZR87_RS18845 at 581.009 kb on - strand, within ABZR87_RS18845 at 581.323 kb on + strand, within ABZR87_RS18845 at 581.324 kb on - strand, within ABZR87_RS18845 at 581.456 kb on - strand at 581.533 kb on + strand at 581.533 kb on + strand at 581.534 kb on - strand at 581.534 kb on - strand at 581.534 kb on - strand at 581.575 kb on + strand at 581.685 kb on - strand at 581.685 kb on - strand at 581.691 kb on + strand at 581.691 kb on + strand at 581.691 kb on + strand at 581.692 kb on - strand at 581.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 578,465 + -0.6 578,466 - +0.5 578,466 - -1.3 578,471 + -1.7 578,471 + -1.2 578,472 - -1.1 578,472 - -1.3 578,472 - -0.7 578,481 - -2.0 578,600 + ABZR87_RS18835 0.17 -0.6 579,020 + ABZR87_RS18835 0.58 -0.5 579,020 + ABZR87_RS18835 0.58 -0.4 579,020 + ABZR87_RS18835 0.58 -0.2 579,020 + ABZR87_RS18835 0.58 -0.5 579,020 + ABZR87_RS18835 0.58 -1.8 579,020 + ABZR87_RS18835 0.58 -1.0 579,020 + ABZR87_RS18835 0.58 -0.5 579,020 + ABZR87_RS18835 0.58 -2.2 579,020 + ABZR87_RS18835 0.58 -0.6 579,021 - ABZR87_RS18835 0.58 +0.6 579,021 - ABZR87_RS18835 0.58 -0.6 579,021 - ABZR87_RS18835 0.58 +1.7 579,021 - ABZR87_RS18835 0.58 -0.5 579,021 - ABZR87_RS18835 0.58 -1.6 579,021 - ABZR87_RS18835 0.58 +1.6 579,021 - ABZR87_RS18835 0.58 -2.8 579,021 - ABZR87_RS18835 0.58 -2.9 579,021 - ABZR87_RS18835 0.58 -3.4 579,022 + ABZR87_RS18835 0.58 -0.3 579,023 - ABZR87_RS18835 0.58 -1.2 579,023 - ABZR87_RS18835 0.58 -1.1 579,071 + ABZR87_RS18835 0.63 -1.3 579,071 + ABZR87_RS18835 0.63 +0.4 579,071 + ABZR87_RS18835 0.63 -0.7 579,072 - ABZR87_RS18835 0.63 -1.1 579,072 - ABZR87_RS18835 0.63 -1.1 579,072 - ABZR87_RS18835 0.63 -0.7 579,072 - ABZR87_RS18835 0.63 -1.3 579,072 - ABZR87_RS18835 0.63 -2.3 579,179 + ABZR87_RS18835 0.73 +0.6 579,180 - ABZR87_RS18835 0.73 -0.9 579,180 - ABZR87_RS18835 0.73 +0.3 579,180 - ABZR87_RS18835 0.73 +0.1 579,350 + -1.4 579,368 + +0.3 579,368 + +0.5 579,368 + -1.6 579,368 + -1.6 579,368 + -1.6 579,369 - -1.9 579,565 + -0.6 579,565 + -1.9 579,565 + -1.2 579,566 - +0.5 579,566 - -0.1 579,583 + -0.8 579,583 + -0.8 579,604 + ABZR87_RS18840 0.11 -0.9 579,604 + ABZR87_RS18840 0.11 +0.1 579,604 + ABZR87_RS18840 0.11 +0.6 579,612 + ABZR87_RS18840 0.12 -0.6 579,612 + ABZR87_RS18840 0.12 -0.6 579,612 + ABZR87_RS18840 0.12 -2.2 579,612 + ABZR87_RS18840 0.12 -1.2 579,613 - ABZR87_RS18840 0.12 -0.7 579,616 + ABZR87_RS18840 0.12 -0.6 579,617 - ABZR87_RS18840 0.12 +0.2 579,688 + ABZR87_RS18840 0.17 -1.6 579,689 - ABZR87_RS18840 0.17 -1.0 579,689 - ABZR87_RS18840 0.17 -0.2 579,724 + ABZR87_RS18840 0.20 -1.8 579,724 + ABZR87_RS18840 0.20 -1.8 579,724 + ABZR87_RS18840 0.20 -1.8 579,724 + ABZR87_RS18840 0.20 -2.4 579,724 + ABZR87_RS18840 0.20 -1.3 579,725 - ABZR87_RS18840 0.20 +1.2 579,725 - ABZR87_RS18840 0.20 +0.1 579,725 - ABZR87_RS18840 0.20 -0.3 579,725 - ABZR87_RS18840 0.20 +0.1 579,961 + ABZR87_RS18840 0.37 +0.3 579,961 + ABZR87_RS18840 0.37 -0.5 580,229 - ABZR87_RS18840 0.56 -1.4 580,367 - ABZR87_RS18840 0.66 -1.4 580,457 + ABZR87_RS18840 0.72 -0.9 580,458 - ABZR87_RS18840 0.73 -1.7 580,544 - ABZR87_RS18840 0.79 -1.3 580,565 + ABZR87_RS18840 0.80 -2.0 580,566 - ABZR87_RS18840 0.80 -1.4 580,566 - ABZR87_RS18840 0.80 +0.2 580,583 + ABZR87_RS18840 0.82 -0.7 580,583 + ABZR87_RS18840 0.82 -1.7 580,583 + ABZR87_RS18840 0.82 -0.9 580,584 - ABZR87_RS18840 0.82 -0.8 580,585 + ABZR87_RS18840 0.82 -2.3 580,586 - ABZR87_RS18840 0.82 -0.2 580,586 - ABZR87_RS18840 0.82 -1.0 580,681 + ABZR87_RS18840 0.89 -0.5 580,682 - ABZR87_RS18840 0.89 -1.0 580,790 + -0.6 580,791 - -1.2 580,791 - +0.5 580,855 + -1.4 580,855 + +1.3 580,856 - +2.3 580,856 - +0.6 580,910 + ABZR87_RS18845 0.10 +0.8 580,910 + ABZR87_RS18845 0.10 +1.5 580,910 + ABZR87_RS18845 0.10 -0.4 580,910 + ABZR87_RS18845 0.10 +1.7 580,910 + ABZR87_RS18845 0.10 -0.5 580,910 + ABZR87_RS18845 0.10 +0.8 580,910 + ABZR87_RS18845 0.10 +0.9 580,911 - ABZR87_RS18845 0.10 -0.6 580,911 - ABZR87_RS18845 0.10 +0.1 580,911 - ABZR87_RS18845 0.10 +0.1 580,911 - ABZR87_RS18845 0.10 -0.1 580,911 - ABZR87_RS18845 0.10 -0.2 581,008 + ABZR87_RS18845 0.27 -0.5 581,008 + ABZR87_RS18845 0.27 -0.7 581,008 + ABZR87_RS18845 0.27 +0.1 581,009 - ABZR87_RS18845 0.28 +0.6 581,009 - ABZR87_RS18845 0.28 +0.5 581,009 - ABZR87_RS18845 0.28 -0.3 581,009 - ABZR87_RS18845 0.28 -0.8 581,009 - ABZR87_RS18845 0.28 +0.1 581,323 + ABZR87_RS18845 0.84 -0.3 581,324 - ABZR87_RS18845 0.84 -0.1 581,456 - -0.3 581,533 + -0.2 581,533 + -0.4 581,534 - -1.2 581,534 - -0.1 581,534 - +2.2 581,575 + -0.0 581,685 - -0.1 581,685 - -0.1 581,691 + -1.3 581,691 + -0.3 581,691 + -1.3 581,692 - +0.8 581,789 - -0.0
Or see this region's nucleotide sequence