Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18550

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18545 and ABZR87_RS18550 are separated by 302 nucleotidesABZR87_RS18550 and ABZR87_RS18555 are separated by 100 nucleotides ABZR87_RS18545: ABZR87_RS18545 - alpha/beta hydrolase, at 515,885 to 516,697 _RS18545 ABZR87_RS18550: ABZR87_RS18550 - alkane 1-monooxygenase, at 517,000 to 518,163 _RS18550 ABZR87_RS18555: ABZR87_RS18555 - AraC family transcriptional regulator, at 518,264 to 519,163 _RS18555 Position (kb) 516 517 518 519Strain fitness (log2 ratio) -3 -2 -1 0 1at 516.098 kb on + strand, within ABZR87_RS18545at 516.098 kb on + strand, within ABZR87_RS18545at 516.099 kb on - strand, within ABZR87_RS18545at 516.099 kb on - strand, within ABZR87_RS18545at 516.099 kb on - strand, within ABZR87_RS18545at 516.099 kb on - strand, within ABZR87_RS18545at 516.131 kb on + strand, within ABZR87_RS18545at 516.173 kb on + strand, within ABZR87_RS18545at 516.276 kb on - strand, within ABZR87_RS18545at 516.545 kb on + strand, within ABZR87_RS18545at 516.545 kb on + strand, within ABZR87_RS18545at 516.725 kb on + strandat 516.726 kb on - strandat 516.874 kb on + strandat 516.909 kb on + strandat 516.910 kb on - strandat 516.911 kb on + strandat 516.912 kb on - strandat 516.955 kb on + strandat 516.955 kb on + strandat 516.955 kb on + strandat 517.051 kb on + strandat 517.052 kb on - strandat 517.052 kb on - strandat 517.249 kb on + strand, within ABZR87_RS18550at 517.250 kb on - strand, within ABZR87_RS18550at 517.252 kb on + strand, within ABZR87_RS18550at 517.253 kb on - strand, within ABZR87_RS18550at 517.253 kb on - strand, within ABZR87_RS18550at 517.253 kb on - strand, within ABZR87_RS18550at 517.268 kb on - strand, within ABZR87_RS18550at 517.268 kb on - strand, within ABZR87_RS18550at 517.327 kb on + strand, within ABZR87_RS18550at 517.327 kb on + strand, within ABZR87_RS18550at 517.327 kb on + strand, within ABZR87_RS18550at 517.327 kb on + strand, within ABZR87_RS18550at 517.327 kb on + strand, within ABZR87_RS18550at 517.328 kb on - strand, within ABZR87_RS18550at 517.343 kb on - strand, within ABZR87_RS18550at 517.348 kb on + strand, within ABZR87_RS18550at 517.348 kb on + strand, within ABZR87_RS18550at 517.348 kb on + strand, within ABZR87_RS18550at 517.349 kb on - strand, within ABZR87_RS18550at 517.399 kb on - strand, within ABZR87_RS18550at 517.474 kb on + strand, within ABZR87_RS18550at 517.475 kb on - strand, within ABZR87_RS18550at 517.475 kb on - strand, within ABZR87_RS18550at 517.475 kb on - strand, within ABZR87_RS18550at 517.553 kb on - strand, within ABZR87_RS18550at 517.771 kb on + strand, within ABZR87_RS18550at 517.772 kb on - strand, within ABZR87_RS18550at 517.772 kb on - strand, within ABZR87_RS18550at 517.772 kb on - strand, within ABZR87_RS18550at 517.772 kb on - strand, within ABZR87_RS18550at 517.801 kb on + strand, within ABZR87_RS18550at 517.801 kb on + strand, within ABZR87_RS18550at 517.802 kb on - strand, within ABZR87_RS18550at 517.802 kb on - strand, within ABZR87_RS18550at 517.802 kb on - strand, within ABZR87_RS18550at 517.802 kb on - strand, within ABZR87_RS18550at 517.812 kb on + strand, within ABZR87_RS18550at 517.814 kb on - strand, within ABZR87_RS18550at 517.912 kb on + strand, within ABZR87_RS18550at 517.912 kb on + strand, within ABZR87_RS18550at 518.009 kb on - strand, within ABZR87_RS18550at 518.032 kb on + strand, within ABZR87_RS18550at 518.032 kb on + strand, within ABZR87_RS18550at 518.032 kb on + strand, within ABZR87_RS18550at 518.032 kb on + strand, within ABZR87_RS18550at 518.033 kb on - strand, within ABZR87_RS18550at 518.033 kb on - strand, within ABZR87_RS18550at 518.083 kb on + strandat 518.083 kb on + strandat 518.084 kb on - strandat 518.084 kb on - strandat 518.084 kb on - strandat 518.146 kb on + strandat 518.147 kb on - strandat 518.382 kb on - strand, within ABZR87_RS18555at 518.451 kb on + strand, within ABZR87_RS18555at 518.583 kb on + strand, within ABZR87_RS18555at 518.583 kb on + strand, within ABZR87_RS18555at 518.717 kb on + strand, within ABZR87_RS18555at 518.718 kb on - strand, within ABZR87_RS18555at 518.718 kb on - strand, within ABZR87_RS18555at 518.841 kb on - strand, within ABZR87_RS18555at 518.960 kb on + strand, within ABZR87_RS18555at 518.960 kb on + strand, within ABZR87_RS18555at 518.961 kb on - strand, within ABZR87_RS18555at 518.961 kb on - strand, within ABZR87_RS18555at 518.961 kb on - strand, within ABZR87_RS18555at 519.161 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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516,098 + ABZR87_RS18545 0.26 -1.5
516,098 + ABZR87_RS18545 0.26 +0.4
516,099 - ABZR87_RS18545 0.26 -0.0
516,099 - ABZR87_RS18545 0.26 -0.4
516,099 - ABZR87_RS18545 0.26 -1.0
516,099 - ABZR87_RS18545 0.26 -0.6
516,131 + ABZR87_RS18545 0.30 -0.5
516,173 + ABZR87_RS18545 0.35 +0.5
516,276 - ABZR87_RS18545 0.48 -0.4
516,545 + ABZR87_RS18545 0.81 +1.3
516,545 + ABZR87_RS18545 0.81 +0.5
516,725 + -1.2
516,726 - +0.9
516,874 + -1.0
516,909 + +1.3
516,910 - +0.1
516,911 + +1.1
516,912 - -1.5
516,955 + -0.1
516,955 + +0.0
516,955 + -1.3
517,051 + +0.6
517,052 - +0.8
517,052 - +1.7
517,249 + ABZR87_RS18550 0.21 +0.2
517,250 - ABZR87_RS18550 0.21 +0.7
517,252 + ABZR87_RS18550 0.22 -1.0
517,253 - ABZR87_RS18550 0.22 -0.2
517,253 - ABZR87_RS18550 0.22 -0.1
517,253 - ABZR87_RS18550 0.22 +0.6
517,268 - ABZR87_RS18550 0.23 -1.2
517,268 - ABZR87_RS18550 0.23 -0.2
517,327 + ABZR87_RS18550 0.28 +0.2
517,327 + ABZR87_RS18550 0.28 -0.3
517,327 + ABZR87_RS18550 0.28 +0.3
517,327 + ABZR87_RS18550 0.28 -0.1
517,327 + ABZR87_RS18550 0.28 -0.1
517,328 - ABZR87_RS18550 0.28 +0.4
517,343 - ABZR87_RS18550 0.29 -0.4
517,348 + ABZR87_RS18550 0.30 +0.0
517,348 + ABZR87_RS18550 0.30 -0.0
517,348 + ABZR87_RS18550 0.30 -1.4
517,349 - ABZR87_RS18550 0.30 +1.1
517,399 - ABZR87_RS18550 0.34 -0.8
517,474 + ABZR87_RS18550 0.41 +0.7
517,475 - ABZR87_RS18550 0.41 -1.4
517,475 - ABZR87_RS18550 0.41 +0.1
517,475 - ABZR87_RS18550 0.41 -1.0
517,553 - ABZR87_RS18550 0.48 +0.4
517,771 + ABZR87_RS18550 0.66 -1.8
517,772 - ABZR87_RS18550 0.66 -0.4
517,772 - ABZR87_RS18550 0.66 +0.1
517,772 - ABZR87_RS18550 0.66 +0.3
517,772 - ABZR87_RS18550 0.66 +0.3
517,801 + ABZR87_RS18550 0.69 -2.0
517,801 + ABZR87_RS18550 0.69 +1.2
517,802 - ABZR87_RS18550 0.69 -1.0
517,802 - ABZR87_RS18550 0.69 +0.1
517,802 - ABZR87_RS18550 0.69 +0.1
517,802 - ABZR87_RS18550 0.69 +1.1
517,812 + ABZR87_RS18550 0.70 +0.0
517,814 - ABZR87_RS18550 0.70 -1.9
517,912 + ABZR87_RS18550 0.78 +0.4
517,912 + ABZR87_RS18550 0.78 -0.8
518,009 - ABZR87_RS18550 0.87 -0.2
518,032 + ABZR87_RS18550 0.89 -0.8
518,032 + ABZR87_RS18550 0.89 -1.1
518,032 + ABZR87_RS18550 0.89 -0.8
518,032 + ABZR87_RS18550 0.89 +0.0
518,033 - ABZR87_RS18550 0.89 -0.7
518,033 - ABZR87_RS18550 0.89 -0.2
518,083 + -1.4
518,083 + -0.9
518,084 - -1.0
518,084 - -0.1
518,084 - -0.7
518,146 + +0.8
518,147 - +1.3
518,382 - ABZR87_RS18555 0.13 -0.8
518,451 + ABZR87_RS18555 0.21 -2.9
518,583 + ABZR87_RS18555 0.35 +0.0
518,583 + ABZR87_RS18555 0.35 -0.3
518,717 + ABZR87_RS18555 0.50 -0.2
518,718 - ABZR87_RS18555 0.50 -1.2
518,718 - ABZR87_RS18555 0.50 -0.4
518,841 - ABZR87_RS18555 0.64 +0.2
518,960 + ABZR87_RS18555 0.77 -0.1
518,960 + ABZR87_RS18555 0.77 -0.8
518,961 - ABZR87_RS18555 0.77 +0.3
518,961 - ABZR87_RS18555 0.77 -1.2
518,961 - ABZR87_RS18555 0.77 +0.7
519,161 + +0.2

Or see this region's nucleotide sequence