Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18545

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18540 and ABZR87_RS18545 are separated by 7 nucleotidesABZR87_RS18545 and ABZR87_RS18550 are separated by 302 nucleotides ABZR87_RS18540: ABZR87_RS18540 - branched-chain amino acid aminotransferase, at 514,777 to 515,877 _RS18540 ABZR87_RS18545: ABZR87_RS18545 - alpha/beta hydrolase, at 515,885 to 516,697 _RS18545 ABZR87_RS18550: ABZR87_RS18550 - alkane 1-monooxygenase, at 517,000 to 518,163 _RS18550 Position (kb) 515 516 517Strain fitness (log2 ratio) -2 -1 0 1at 514.910 kb on - strand, within ABZR87_RS18540at 514.994 kb on - strand, within ABZR87_RS18540at 514.994 kb on - strand, within ABZR87_RS18540at 515.026 kb on + strand, within ABZR87_RS18540at 515.026 kb on + strand, within ABZR87_RS18540at 515.206 kb on + strand, within ABZR87_RS18540at 515.206 kb on + strand, within ABZR87_RS18540at 515.267 kb on - strand, within ABZR87_RS18540at 515.302 kb on + strand, within ABZR87_RS18540at 515.302 kb on + strand, within ABZR87_RS18540at 515.303 kb on - strand, within ABZR87_RS18540at 515.303 kb on - strand, within ABZR87_RS18540at 515.303 kb on - strand, within ABZR87_RS18540at 515.353 kb on + strand, within ABZR87_RS18540at 515.354 kb on - strand, within ABZR87_RS18540at 515.354 kb on - strand, within ABZR87_RS18540at 515.354 kb on - strand, within ABZR87_RS18540at 515.354 kb on - strand, within ABZR87_RS18540at 515.404 kb on + strand, within ABZR87_RS18540at 515.404 kb on + strand, within ABZR87_RS18540at 515.404 kb on + strand, within ABZR87_RS18540at 515.404 kb on + strand, within ABZR87_RS18540at 515.404 kb on + strand, within ABZR87_RS18540at 515.404 kb on + strand, within ABZR87_RS18540at 515.404 kb on + strand, within ABZR87_RS18540at 515.405 kb on - strand, within ABZR87_RS18540at 515.405 kb on - strand, within ABZR87_RS18540at 515.405 kb on - strand, within ABZR87_RS18540at 515.405 kb on - strand, within ABZR87_RS18540at 515.405 kb on - strand, within ABZR87_RS18540at 515.405 kb on - strand, within ABZR87_RS18540at 515.644 kb on + strand, within ABZR87_RS18540at 515.957 kb on + strandat 515.958 kb on - strandat 515.958 kb on - strandat 515.958 kb on - strandat 516.098 kb on + strand, within ABZR87_RS18545at 516.098 kb on + strand, within ABZR87_RS18545at 516.099 kb on - strand, within ABZR87_RS18545at 516.099 kb on - strand, within ABZR87_RS18545at 516.099 kb on - strand, within ABZR87_RS18545at 516.099 kb on - strand, within ABZR87_RS18545at 516.131 kb on + strand, within ABZR87_RS18545at 516.173 kb on + strand, within ABZR87_RS18545at 516.276 kb on - strand, within ABZR87_RS18545at 516.545 kb on + strand, within ABZR87_RS18545at 516.545 kb on + strand, within ABZR87_RS18545at 516.725 kb on + strandat 516.726 kb on - strandat 516.874 kb on + strandat 516.909 kb on + strandat 516.910 kb on - strandat 516.911 kb on + strandat 516.912 kb on - strandat 516.955 kb on + strandat 516.955 kb on + strandat 516.955 kb on + strandat 517.051 kb on + strandat 517.052 kb on - strandat 517.052 kb on - strandat 517.249 kb on + strand, within ABZR87_RS18550at 517.250 kb on - strand, within ABZR87_RS18550at 517.252 kb on + strand, within ABZR87_RS18550at 517.253 kb on - strand, within ABZR87_RS18550at 517.253 kb on - strand, within ABZR87_RS18550at 517.253 kb on - strand, within ABZR87_RS18550at 517.268 kb on - strand, within ABZR87_RS18550at 517.268 kb on - strand, within ABZR87_RS18550at 517.327 kb on + strand, within ABZR87_RS18550at 517.327 kb on + strand, within ABZR87_RS18550at 517.327 kb on + strand, within ABZR87_RS18550at 517.327 kb on + strand, within ABZR87_RS18550at 517.327 kb on + strand, within ABZR87_RS18550at 517.328 kb on - strand, within ABZR87_RS18550at 517.343 kb on - strand, within ABZR87_RS18550at 517.348 kb on + strand, within ABZR87_RS18550at 517.348 kb on + strand, within ABZR87_RS18550at 517.348 kb on + strand, within ABZR87_RS18550at 517.349 kb on - strand, within ABZR87_RS18550at 517.399 kb on - strand, within ABZR87_RS18550at 517.474 kb on + strand, within ABZR87_RS18550at 517.475 kb on - strand, within ABZR87_RS18550at 517.475 kb on - strand, within ABZR87_RS18550at 517.475 kb on - strand, within ABZR87_RS18550at 517.553 kb on - strand, within ABZR87_RS18550

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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514,910 - ABZR87_RS18540 0.12 -1.1
514,994 - ABZR87_RS18540 0.20 -0.1
514,994 - ABZR87_RS18540 0.20 +0.1
515,026 + ABZR87_RS18540 0.23 -1.1
515,026 + ABZR87_RS18540 0.23 -0.7
515,206 + ABZR87_RS18540 0.39 -0.6
515,206 + ABZR87_RS18540 0.39 -1.3
515,267 - ABZR87_RS18540 0.45 -0.2
515,302 + ABZR87_RS18540 0.48 -0.5
515,302 + ABZR87_RS18540 0.48 -1.3
515,303 - ABZR87_RS18540 0.48 +0.3
515,303 - ABZR87_RS18540 0.48 -0.6
515,303 - ABZR87_RS18540 0.48 -0.2
515,353 + ABZR87_RS18540 0.52 -0.4
515,354 - ABZR87_RS18540 0.52 +0.7
515,354 - ABZR87_RS18540 0.52 +1.0
515,354 - ABZR87_RS18540 0.52 -0.2
515,354 - ABZR87_RS18540 0.52 -0.9
515,404 + ABZR87_RS18540 0.57 -1.4
515,404 + ABZR87_RS18540 0.57 -1.5
515,404 + ABZR87_RS18540 0.57 -0.7
515,404 + ABZR87_RS18540 0.57 -0.0
515,404 + ABZR87_RS18540 0.57 -1.3
515,404 + ABZR87_RS18540 0.57 -0.1
515,404 + ABZR87_RS18540 0.57 -0.3
515,405 - ABZR87_RS18540 0.57 -0.6
515,405 - ABZR87_RS18540 0.57 -1.0
515,405 - ABZR87_RS18540 0.57 -0.2
515,405 - ABZR87_RS18540 0.57 -2.4
515,405 - ABZR87_RS18540 0.57 -0.1
515,405 - ABZR87_RS18540 0.57 -1.6
515,644 + ABZR87_RS18540 0.79 -1.2
515,957 + -1.4
515,958 - -1.4
515,958 - -0.7
515,958 - +0.2
516,098 + ABZR87_RS18545 0.26 -1.5
516,098 + ABZR87_RS18545 0.26 +0.4
516,099 - ABZR87_RS18545 0.26 -0.0
516,099 - ABZR87_RS18545 0.26 -0.4
516,099 - ABZR87_RS18545 0.26 -1.0
516,099 - ABZR87_RS18545 0.26 -0.6
516,131 + ABZR87_RS18545 0.30 -0.5
516,173 + ABZR87_RS18545 0.35 +0.5
516,276 - ABZR87_RS18545 0.48 -0.4
516,545 + ABZR87_RS18545 0.81 +1.3
516,545 + ABZR87_RS18545 0.81 +0.5
516,725 + -1.2
516,726 - +0.9
516,874 + -1.0
516,909 + +1.3
516,910 - +0.1
516,911 + +1.1
516,912 - -1.5
516,955 + -0.1
516,955 + +0.0
516,955 + -1.3
517,051 + +0.6
517,052 - +0.8
517,052 - +1.7
517,249 + ABZR87_RS18550 0.21 +0.2
517,250 - ABZR87_RS18550 0.21 +0.7
517,252 + ABZR87_RS18550 0.22 -1.0
517,253 - ABZR87_RS18550 0.22 -0.2
517,253 - ABZR87_RS18550 0.22 -0.1
517,253 - ABZR87_RS18550 0.22 +0.6
517,268 - ABZR87_RS18550 0.23 -1.2
517,268 - ABZR87_RS18550 0.23 -0.2
517,327 + ABZR87_RS18550 0.28 +0.2
517,327 + ABZR87_RS18550 0.28 -0.3
517,327 + ABZR87_RS18550 0.28 +0.3
517,327 + ABZR87_RS18550 0.28 -0.1
517,327 + ABZR87_RS18550 0.28 -0.1
517,328 - ABZR87_RS18550 0.28 +0.4
517,343 - ABZR87_RS18550 0.29 -0.4
517,348 + ABZR87_RS18550 0.30 +0.0
517,348 + ABZR87_RS18550 0.30 -0.0
517,348 + ABZR87_RS18550 0.30 -1.4
517,349 - ABZR87_RS18550 0.30 +1.1
517,399 - ABZR87_RS18550 0.34 -0.8
517,474 + ABZR87_RS18550 0.41 +0.7
517,475 - ABZR87_RS18550 0.41 -1.4
517,475 - ABZR87_RS18550 0.41 +0.1
517,475 - ABZR87_RS18550 0.41 -1.0
517,553 - ABZR87_RS18550 0.48 +0.4

Or see this region's nucleotide sequence