Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18535

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18525 and ABZR87_RS18530 are separated by 19 nucleotidesABZR87_RS18530 and ABZR87_RS18535 are separated by 141 nucleotidesABZR87_RS18535 and ABZR87_RS18540 are separated by 157 nucleotides ABZR87_RS18525: ABZR87_RS18525 - cupin domain-containing protein, at 511,748 to 512,152 _RS18525 ABZR87_RS18530: ABZR87_RS18530 - SDR family oxidoreductase, at 512,172 to 512,924 _RS18530 ABZR87_RS18535: ABZR87_RS18535 - PLP-dependent aminotransferase family protein, at 513,066 to 514,619 _RS18535 ABZR87_RS18540: ABZR87_RS18540 - branched-chain amino acid aminotransferase, at 514,777 to 515,877 _RS18540 Position (kb) 513 514 515Strain fitness (log2 ratio) -2 -1 0 1 2at 512.174 kb on - strandat 512.329 kb on + strand, within ABZR87_RS18530at 512.330 kb on - strand, within ABZR87_RS18530at 512.475 kb on + strand, within ABZR87_RS18530at 512.475 kb on + strand, within ABZR87_RS18530at 512.552 kb on - strand, within ABZR87_RS18530at 512.552 kb on - strand, within ABZR87_RS18530at 512.552 kb on - strand, within ABZR87_RS18530at 512.605 kb on + strand, within ABZR87_RS18530at 512.605 kb on + strand, within ABZR87_RS18530at 512.606 kb on - strand, within ABZR87_RS18530at 512.850 kb on - strandat 512.907 kb on + strandat 512.955 kb on + strandat 512.956 kb on - strandat 512.956 kb on - strandat 512.956 kb on - strandat 512.956 kb on - strandat 512.965 kb on + strandat 512.966 kb on - strandat 512.966 kb on - strandat 513.074 kb on - strandat 513.074 kb on - strandat 513.225 kb on - strand, within ABZR87_RS18535at 513.256 kb on - strand, within ABZR87_RS18535at 513.256 kb on - strand, within ABZR87_RS18535at 513.279 kb on + strand, within ABZR87_RS18535at 513.280 kb on - strand, within ABZR87_RS18535at 513.280 kb on - strand, within ABZR87_RS18535at 513.280 kb on - strand, within ABZR87_RS18535at 513.280 kb on - strand, within ABZR87_RS18535at 513.619 kb on - strand, within ABZR87_RS18535at 513.619 kb on - strand, within ABZR87_RS18535at 513.619 kb on - strand, within ABZR87_RS18535at 513.619 kb on - strand, within ABZR87_RS18535at 513.753 kb on + strand, within ABZR87_RS18535at 513.753 kb on + strand, within ABZR87_RS18535at 513.985 kb on - strand, within ABZR87_RS18535at 514.002 kb on + strand, within ABZR87_RS18535at 514.060 kb on - strand, within ABZR87_RS18535at 514.060 kb on - strand, within ABZR87_RS18535at 514.107 kb on + strand, within ABZR87_RS18535at 514.108 kb on - strand, within ABZR87_RS18535at 514.186 kb on + strand, within ABZR87_RS18535at 514.187 kb on - strand, within ABZR87_RS18535at 514.187 kb on - strand, within ABZR87_RS18535at 514.187 kb on - strand, within ABZR87_RS18535at 514.258 kb on - strand, within ABZR87_RS18535at 514.453 kb on - strand, within ABZR87_RS18535at 514.684 kb on + strandat 514.685 kb on + strandat 514.685 kb on + strandat 514.685 kb on + strandat 514.685 kb on + strandat 514.685 kb on + strandat 514.685 kb on + strandat 514.685 kb on + strandat 514.685 kb on + strandat 514.685 kb on + strandat 514.686 kb on - strandat 514.686 kb on - strandat 514.686 kb on - strandat 514.686 kb on - strandat 514.686 kb on - strandat 514.686 kb on - strandat 514.686 kb on - strandat 514.686 kb on - strandat 514.686 kb on - strandat 514.686 kb on - strandat 514.686 kb on - strandat 514.697 kb on + strandat 514.698 kb on - strandat 514.698 kb on - strandat 514.777 kb on - strandat 514.777 kb on - strandat 514.777 kb on - strandat 514.777 kb on - strandat 514.880 kb on + strandat 514.910 kb on - strand, within ABZR87_RS18540at 514.994 kb on - strand, within ABZR87_RS18540at 514.994 kb on - strand, within ABZR87_RS18540at 515.026 kb on + strand, within ABZR87_RS18540at 515.026 kb on + strand, within ABZR87_RS18540at 515.206 kb on + strand, within ABZR87_RS18540at 515.206 kb on + strand, within ABZR87_RS18540at 515.267 kb on - strand, within ABZR87_RS18540at 515.302 kb on + strand, within ABZR87_RS18540at 515.302 kb on + strand, within ABZR87_RS18540at 515.303 kb on - strand, within ABZR87_RS18540at 515.303 kb on - strand, within ABZR87_RS18540at 515.303 kb on - strand, within ABZR87_RS18540at 515.353 kb on + strand, within ABZR87_RS18540at 515.354 kb on - strand, within ABZR87_RS18540at 515.354 kb on - strand, within ABZR87_RS18540at 515.354 kb on - strand, within ABZR87_RS18540at 515.354 kb on - strand, within ABZR87_RS18540at 515.404 kb on + strand, within ABZR87_RS18540at 515.404 kb on + strand, within ABZR87_RS18540at 515.404 kb on + strand, within ABZR87_RS18540at 515.404 kb on + strand, within ABZR87_RS18540at 515.404 kb on + strand, within ABZR87_RS18540at 515.404 kb on + strand, within ABZR87_RS18540at 515.404 kb on + strand, within ABZR87_RS18540at 515.405 kb on - strand, within ABZR87_RS18540at 515.405 kb on - strand, within ABZR87_RS18540at 515.405 kb on - strand, within ABZR87_RS18540at 515.405 kb on - strand, within ABZR87_RS18540at 515.405 kb on - strand, within ABZR87_RS18540at 515.405 kb on - strand, within ABZR87_RS18540

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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512,174 - +0.1
512,329 + ABZR87_RS18530 0.21 +0.1
512,330 - ABZR87_RS18530 0.21 +0.1
512,475 + ABZR87_RS18530 0.40 +0.9
512,475 + ABZR87_RS18530 0.40 -0.7
512,552 - ABZR87_RS18530 0.50 -0.5
512,552 - ABZR87_RS18530 0.50 +0.5
512,552 - ABZR87_RS18530 0.50 -1.1
512,605 + ABZR87_RS18530 0.58 +0.6
512,605 + ABZR87_RS18530 0.58 +0.5
512,606 - ABZR87_RS18530 0.58 -0.8
512,850 - -0.1
512,907 + -0.9
512,955 + -0.7
512,956 - +0.9
512,956 - +0.5
512,956 - -1.8
512,956 - -0.0
512,965 + +0.4
512,966 - -0.7
512,966 - -0.2
513,074 - -0.0
513,074 - +1.9
513,225 - ABZR87_RS18535 0.10 -1.1
513,256 - ABZR87_RS18535 0.12 -1.5
513,256 - ABZR87_RS18535 0.12 +0.1
513,279 + ABZR87_RS18535 0.14 +0.0
513,280 - ABZR87_RS18535 0.14 -0.2
513,280 - ABZR87_RS18535 0.14 -0.6
513,280 - ABZR87_RS18535 0.14 -0.7
513,280 - ABZR87_RS18535 0.14 +0.5
513,619 - ABZR87_RS18535 0.36 +1.5
513,619 - ABZR87_RS18535 0.36 +1.0
513,619 - ABZR87_RS18535 0.36 +0.2
513,619 - ABZR87_RS18535 0.36 -0.3
513,753 + ABZR87_RS18535 0.44 -0.9
513,753 + ABZR87_RS18535 0.44 +0.8
513,985 - ABZR87_RS18535 0.59 -0.1
514,002 + ABZR87_RS18535 0.60 +0.2
514,060 - ABZR87_RS18535 0.64 -0.1
514,060 - ABZR87_RS18535 0.64 -0.5
514,107 + ABZR87_RS18535 0.67 +0.4
514,108 - ABZR87_RS18535 0.67 +0.9
514,186 + ABZR87_RS18535 0.72 -0.8
514,187 - ABZR87_RS18535 0.72 -1.1
514,187 - ABZR87_RS18535 0.72 +2.1
514,187 - ABZR87_RS18535 0.72 +0.0
514,258 - ABZR87_RS18535 0.77 +0.3
514,453 - ABZR87_RS18535 0.89 -1.1
514,684 + -1.1
514,685 + +0.9
514,685 + +0.2
514,685 + -1.2
514,685 + -1.1
514,685 + +0.1
514,685 + +0.5
514,685 + -1.1
514,685 + +0.1
514,685 + -0.2
514,686 - +0.6
514,686 - +0.8
514,686 - +0.2
514,686 - -0.8
514,686 - -0.3
514,686 - -0.4
514,686 - -0.7
514,686 - -1.5
514,686 - -1.5
514,686 - -0.4
514,686 - -2.7
514,697 + +0.3
514,698 - +0.3
514,698 - -1.9
514,777 - +0.0
514,777 - -1.7
514,777 - +1.7
514,777 - -0.1
514,880 + -2.4
514,910 - ABZR87_RS18540 0.12 -1.1
514,994 - ABZR87_RS18540 0.20 -0.1
514,994 - ABZR87_RS18540 0.20 +0.1
515,026 + ABZR87_RS18540 0.23 -1.1
515,026 + ABZR87_RS18540 0.23 -0.7
515,206 + ABZR87_RS18540 0.39 -0.6
515,206 + ABZR87_RS18540 0.39 -1.3
515,267 - ABZR87_RS18540 0.45 -0.2
515,302 + ABZR87_RS18540 0.48 -0.5
515,302 + ABZR87_RS18540 0.48 -1.3
515,303 - ABZR87_RS18540 0.48 +0.3
515,303 - ABZR87_RS18540 0.48 -0.6
515,303 - ABZR87_RS18540 0.48 -0.2
515,353 + ABZR87_RS18540 0.52 -0.4
515,354 - ABZR87_RS18540 0.52 +0.7
515,354 - ABZR87_RS18540 0.52 +1.0
515,354 - ABZR87_RS18540 0.52 -0.2
515,354 - ABZR87_RS18540 0.52 -0.9
515,404 + ABZR87_RS18540 0.57 -1.4
515,404 + ABZR87_RS18540 0.57 -1.5
515,404 + ABZR87_RS18540 0.57 -0.7
515,404 + ABZR87_RS18540 0.57 -0.0
515,404 + ABZR87_RS18540 0.57 -1.3
515,404 + ABZR87_RS18540 0.57 -0.1
515,404 + ABZR87_RS18540 0.57 -0.3
515,405 - ABZR87_RS18540 0.57 -0.6
515,405 - ABZR87_RS18540 0.57 -1.0
515,405 - ABZR87_RS18540 0.57 -0.2
515,405 - ABZR87_RS18540 0.57 -2.4
515,405 - ABZR87_RS18540 0.57 -0.1
515,405 - ABZR87_RS18540 0.57 -1.6

Or see this region's nucleotide sequence