Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18380 and ABZR87_RS18385 are separated by 13 nucleotides ABZR87_RS18385 and ABZR87_RS18390 are separated by 1 nucleotides ABZR87_RS18390 and ABZR87_RS18395 are separated by 78 nucleotides ABZR87_RS18395 and ABZR87_RS18400 are separated by 60 nucleotides ABZR87_RS18400 and ABZR87_RS18405 are separated by 49 nucleotides ABZR87_RS18405 and ABZR87_RS18410 are separated by 81 nucleotides
ABZR87_RS18380: ABZR87_RS18380 - hypothetical protein, at 490,019 to 492,145
_RS18380
ABZR87_RS18385: ABZR87_RS18385 - hypothetical protein, at 492,159 to 492,440
_RS18385
ABZR87_RS18390: ABZR87_RS18390 - hypothetical protein, at 492,442 to 492,768
_RS18390
ABZR87_RS18395: ABZR87_RS18395 - lysophospholipid acyltransferase family protein, at 492,847 to 493,725
_RS18395
ABZR87_RS18400: ABZR87_RS18400 - hypothetical protein, at 493,786 to 494,007
_RS18400
ABZR87_RS18405: ABZR87_RS18405 - hypothetical protein, at 494,057 to 494,311
_RS18405
ABZR87_RS18410: ABZR87_RS18410 - hypothetical protein, at 494,393 to 494,626
_RS18410
Position (kb) 492
493
494 Strain fitness (log2 ratio) -2
-1
0
1
2 at 491.904 kb on + strand, within ABZR87_RS18380 at 491.904 kb on + strand, within ABZR87_RS18380 at 491.904 kb on + strand, within ABZR87_RS18380 at 491.904 kb on + strand, within ABZR87_RS18380 at 491.904 kb on + strand, within ABZR87_RS18380 at 491.905 kb on - strand, within ABZR87_RS18380 at 491.905 kb on - strand, within ABZR87_RS18380 at 491.905 kb on - strand, within ABZR87_RS18380 at 492.165 kb on + strand at 492.166 kb on - strand at 492.262 kb on + strand, within ABZR87_RS18385 at 492.262 kb on + strand, within ABZR87_RS18385 at 492.262 kb on + strand, within ABZR87_RS18385 at 492.262 kb on + strand, within ABZR87_RS18385 at 492.263 kb on - strand, within ABZR87_RS18385 at 492.263 kb on - strand, within ABZR87_RS18385 at 492.299 kb on + strand, within ABZR87_RS18385 at 492.328 kb on + strand, within ABZR87_RS18385 at 492.328 kb on + strand, within ABZR87_RS18385 at 492.328 kb on + strand, within ABZR87_RS18385 at 492.328 kb on + strand, within ABZR87_RS18385 at 492.329 kb on - strand, within ABZR87_RS18385 at 492.370 kb on - strand, within ABZR87_RS18385 at 492.402 kb on - strand, within ABZR87_RS18385 at 492.402 kb on - strand, within ABZR87_RS18385 at 492.444 kb on - strand at 492.444 kb on - strand at 492.583 kb on + strand, within ABZR87_RS18390 at 492.583 kb on + strand, within ABZR87_RS18390 at 492.584 kb on - strand, within ABZR87_RS18390 at 492.584 kb on - strand, within ABZR87_RS18390 at 492.584 kb on - strand, within ABZR87_RS18390 at 492.584 kb on - strand, within ABZR87_RS18390 at 492.608 kb on + strand, within ABZR87_RS18390 at 492.608 kb on + strand, within ABZR87_RS18390 at 492.608 kb on + strand, within ABZR87_RS18390 at 492.672 kb on - strand, within ABZR87_RS18390 at 492.708 kb on - strand, within ABZR87_RS18390 at 492.730 kb on + strand, within ABZR87_RS18390 at 492.835 kb on + strand at 492.849 kb on - strand at 492.891 kb on + strand at 492.891 kb on + strand at 492.891 kb on + strand at 492.892 kb on - strand at 492.892 kb on - strand at 492.892 kb on - strand at 492.892 kb on - strand at 492.892 kb on - strand at 492.894 kb on - strand at 492.902 kb on + strand at 492.914 kb on + strand at 492.914 kb on + strand at 492.914 kb on + strand at 492.914 kb on + strand at 492.915 kb on - strand at 492.915 kb on - strand at 493.115 kb on + strand, within ABZR87_RS18395 at 493.115 kb on + strand, within ABZR87_RS18395 at 493.115 kb on + strand, within ABZR87_RS18395 at 493.115 kb on + strand, within ABZR87_RS18395 at 493.116 kb on - strand, within ABZR87_RS18395 at 493.210 kb on + strand, within ABZR87_RS18395 at 493.302 kb on + strand, within ABZR87_RS18395 at 493.302 kb on + strand, within ABZR87_RS18395 at 493.349 kb on + strand, within ABZR87_RS18395 at 493.610 kb on + strand, within ABZR87_RS18395 at 493.611 kb on - strand, within ABZR87_RS18395 at 493.611 kb on - strand, within ABZR87_RS18395 at 493.611 kb on - strand, within ABZR87_RS18395 at 493.788 kb on - strand at 493.844 kb on + strand, within ABZR87_RS18400 at 493.845 kb on - strand, within ABZR87_RS18400 at 494.026 kb on + strand at 494.026 kb on + strand at 494.058 kb on + strand at 494.059 kb on - strand at 494.059 kb on - strand at 494.082 kb on + strand at 494.082 kb on + strand at 494.083 kb on - strand, within ABZR87_RS18405 at 494.094 kb on - strand, within ABZR87_RS18405 at 494.134 kb on + strand, within ABZR87_RS18405 at 494.134 kb on + strand, within ABZR87_RS18405 at 494.134 kb on + strand, within ABZR87_RS18405 at 494.135 kb on - strand, within ABZR87_RS18405 at 494.247 kb on + strand, within ABZR87_RS18405 at 494.247 kb on + strand, within ABZR87_RS18405 at 494.248 kb on - strand, within ABZR87_RS18405 at 494.248 kb on - strand, within ABZR87_RS18405 at 494.305 kb on + strand at 494.305 kb on + strand at 494.305 kb on + strand at 494.305 kb on + strand at 494.306 kb on - strand at 494.488 kb on + strand, within ABZR87_RS18410 at 494.489 kb on - strand, within ABZR87_RS18410 at 494.489 kb on - strand, within ABZR87_RS18410 at 494.507 kb on - strand, within ABZR87_RS18410 at 494.551 kb on - strand, within ABZR87_RS18410 at 494.551 kb on - strand, within ABZR87_RS18410 at 494.551 kb on - strand, within ABZR87_RS18410 at 494.589 kb on + strand, within ABZR87_RS18410 at 494.589 kb on + strand, within ABZR87_RS18410 at 494.604 kb on + strand at 494.702 kb on - strand at 494.715 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 491,904 + ABZR87_RS18380 0.89 -0.6 491,904 + ABZR87_RS18380 0.89 +0.5 491,904 + ABZR87_RS18380 0.89 -0.9 491,904 + ABZR87_RS18380 0.89 +0.2 491,904 + ABZR87_RS18380 0.89 +0.6 491,905 - ABZR87_RS18380 0.89 -0.4 491,905 - ABZR87_RS18380 0.89 +0.2 491,905 - ABZR87_RS18380 0.89 +0.3 492,165 + -1.2 492,166 - +0.5 492,262 + ABZR87_RS18385 0.37 -0.5 492,262 + ABZR87_RS18385 0.37 -0.2 492,262 + ABZR87_RS18385 0.37 +0.0 492,262 + ABZR87_RS18385 0.37 +0.1 492,263 - ABZR87_RS18385 0.37 +0.1 492,263 - ABZR87_RS18385 0.37 +0.5 492,299 + ABZR87_RS18385 0.50 +0.0 492,328 + ABZR87_RS18385 0.60 -0.4 492,328 + ABZR87_RS18385 0.60 +0.4 492,328 + ABZR87_RS18385 0.60 -0.3 492,328 + ABZR87_RS18385 0.60 -0.1 492,329 - ABZR87_RS18385 0.60 -0.3 492,370 - ABZR87_RS18385 0.75 +0.8 492,402 - ABZR87_RS18385 0.86 +0.1 492,402 - ABZR87_RS18385 0.86 -1.4 492,444 - -1.2 492,444 - -0.5 492,583 + ABZR87_RS18390 0.43 -2.5 492,583 + ABZR87_RS18390 0.43 -0.2 492,584 - ABZR87_RS18390 0.43 -0.4 492,584 - ABZR87_RS18390 0.43 -0.6 492,584 - ABZR87_RS18390 0.43 -0.2 492,584 - ABZR87_RS18390 0.43 +0.7 492,608 + ABZR87_RS18390 0.51 -0.4 492,608 + ABZR87_RS18390 0.51 +1.0 492,608 + ABZR87_RS18390 0.51 -1.9 492,672 - ABZR87_RS18390 0.70 +0.4 492,708 - ABZR87_RS18390 0.81 -0.2 492,730 + ABZR87_RS18390 0.88 -0.5 492,835 + -2.5 492,849 - -0.0 492,891 + -0.1 492,891 + +0.2 492,891 + +0.2 492,892 - -0.4 492,892 - +0.1 492,892 - -0.7 492,892 - +0.4 492,892 - +0.4 492,894 - -0.1 492,902 + -0.9 492,914 + +0.6 492,914 + -0.3 492,914 + -0.5 492,914 + +1.2 492,915 - +0.1 492,915 - -0.2 493,115 + ABZR87_RS18395 0.30 +1.0 493,115 + ABZR87_RS18395 0.30 +0.2 493,115 + ABZR87_RS18395 0.30 +0.4 493,115 + ABZR87_RS18395 0.30 +1.2 493,116 - ABZR87_RS18395 0.31 +0.3 493,210 + ABZR87_RS18395 0.41 -0.8 493,302 + ABZR87_RS18395 0.52 +0.6 493,302 + ABZR87_RS18395 0.52 +0.1 493,349 + ABZR87_RS18395 0.57 -2.5 493,610 + ABZR87_RS18395 0.87 +0.9 493,611 - ABZR87_RS18395 0.87 -0.0 493,611 - ABZR87_RS18395 0.87 +0.4 493,611 - ABZR87_RS18395 0.87 +0.6 493,788 - -1.3 493,844 + ABZR87_RS18400 0.26 -0.9 493,845 - ABZR87_RS18400 0.27 -0.5 494,026 + -0.0 494,026 + -0.2 494,058 + -0.9 494,059 - -0.5 494,059 - +0.1 494,082 + +0.4 494,082 + +1.1 494,083 - ABZR87_RS18405 0.10 +1.0 494,094 - ABZR87_RS18405 0.15 +0.5 494,134 + ABZR87_RS18405 0.30 +1.3 494,134 + ABZR87_RS18405 0.30 -0.4 494,134 + ABZR87_RS18405 0.30 +0.5 494,135 - ABZR87_RS18405 0.31 -0.2 494,247 + ABZR87_RS18405 0.75 -0.5 494,247 + ABZR87_RS18405 0.75 +0.0 494,248 - ABZR87_RS18405 0.75 -0.2 494,248 - ABZR87_RS18405 0.75 -0.7 494,305 + -0.8 494,305 + +0.2 494,305 + -0.1 494,305 + -0.2 494,306 - +0.6 494,488 + ABZR87_RS18410 0.41 -0.6 494,489 - ABZR87_RS18410 0.41 -2.2 494,489 - ABZR87_RS18410 0.41 -1.2 494,507 - ABZR87_RS18410 0.49 +1.8 494,551 - ABZR87_RS18410 0.68 -0.3 494,551 - ABZR87_RS18410 0.68 -0.9 494,551 - ABZR87_RS18410 0.68 +0.7 494,589 + ABZR87_RS18410 0.84 -0.7 494,589 + ABZR87_RS18410 0.84 +0.0 494,604 + +0.1 494,702 - +0.8 494,715 + +0.1
Or see this region's nucleotide sequence