Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18330 and ABZR87_RS18335 overlap by 4 nucleotides ABZR87_RS18335 and ABZR87_RS18340 are separated by 217 nucleotides
ABZR87_RS18330: ABZR87_RS18330 - fumarate reductase/succinate dehydrogenase flavoprotein subunit, at 478,059 to 479,783
_RS18330
ABZR87_RS18335: ABZR87_RS18335 - GntR family transcriptional regulator, at 479,780 to 480,565
_RS18335
ABZR87_RS18340: ABZR87_RS18340 - helix-turn-helix domain-containing protein, at 480,783 to 481,718
_RS18340
Position (kb) 479
480
481 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 478.927 kb on + strand, within ABZR87_RS18330 at 478.927 kb on + strand, within ABZR87_RS18330 at 478.928 kb on - strand, within ABZR87_RS18330 at 478.957 kb on + strand, within ABZR87_RS18330 at 478.957 kb on + strand, within ABZR87_RS18330 at 479.023 kb on + strand, within ABZR87_RS18330 at 479.024 kb on - strand, within ABZR87_RS18330 at 479.024 kb on - strand, within ABZR87_RS18330 at 479.149 kb on + strand, within ABZR87_RS18330 at 479.360 kb on - strand, within ABZR87_RS18330 at 479.404 kb on + strand, within ABZR87_RS18330 at 479.404 kb on + strand, within ABZR87_RS18330 at 479.405 kb on - strand, within ABZR87_RS18330 at 479.405 kb on - strand, within ABZR87_RS18330 at 479.405 kb on - strand, within ABZR87_RS18330 at 479.405 kb on - strand, within ABZR87_RS18330 at 479.405 kb on - strand, within ABZR87_RS18330 at 479.405 kb on - strand, within ABZR87_RS18330 at 479.405 kb on - strand, within ABZR87_RS18330 at 479.437 kb on + strand, within ABZR87_RS18330 at 479.496 kb on - strand, within ABZR87_RS18330 at 479.515 kb on + strand, within ABZR87_RS18330 at 479.515 kb on + strand, within ABZR87_RS18330 at 479.516 kb on - strand, within ABZR87_RS18330 at 479.516 kb on - strand, within ABZR87_RS18330 at 479.521 kb on + strand, within ABZR87_RS18330 at 479.521 kb on + strand, within ABZR87_RS18330 at 479.521 kb on + strand, within ABZR87_RS18330 at 479.522 kb on - strand, within ABZR87_RS18330 at 479.522 kb on - strand, within ABZR87_RS18330 at 479.522 kb on - strand, within ABZR87_RS18330 at 479.522 kb on - strand, within ABZR87_RS18330 at 479.523 kb on + strand, within ABZR87_RS18330 at 479.523 kb on + strand, within ABZR87_RS18330 at 479.524 kb on - strand, within ABZR87_RS18330 at 479.524 kb on - strand, within ABZR87_RS18330 at 479.575 kb on + strand, within ABZR87_RS18330 at 479.575 kb on + strand, within ABZR87_RS18330 at 479.576 kb on - strand, within ABZR87_RS18330 at 479.576 kb on - strand, within ABZR87_RS18330 at 479.576 kb on - strand, within ABZR87_RS18330 at 479.576 kb on - strand, within ABZR87_RS18330 at 479.576 kb on - strand, within ABZR87_RS18330 at 479.762 kb on - strand at 479.777 kb on + strand at 479.778 kb on - strand at 479.778 kb on - strand at 479.778 kb on - strand at 479.851 kb on - strand at 480.474 kb on + strand, within ABZR87_RS18335 at 480.474 kb on + strand, within ABZR87_RS18335 at 480.475 kb on - strand, within ABZR87_RS18335 at 480.553 kb on + strand at 480.603 kb on + strand at 480.616 kb on + strand at 480.616 kb on + strand at 480.616 kb on + strand at 480.617 kb on - strand at 480.617 kb on - strand at 480.617 kb on - strand at 480.617 kb on - strand at 480.617 kb on - strand at 480.639 kb on - strand at 480.675 kb on + strand at 480.675 kb on + strand at 480.675 kb on + strand at 480.675 kb on + strand at 480.676 kb on - strand at 480.676 kb on - strand at 480.676 kb on - strand at 480.677 kb on + strand at 480.678 kb on - strand at 480.892 kb on - strand, within ABZR87_RS18340 at 480.936 kb on + strand, within ABZR87_RS18340 at 480.936 kb on + strand, within ABZR87_RS18340 at 480.936 kb on + strand, within ABZR87_RS18340 at 480.936 kb on + strand, within ABZR87_RS18340 at 480.937 kb on - strand, within ABZR87_RS18340 at 480.937 kb on - strand, within ABZR87_RS18340 at 480.972 kb on + strand, within ABZR87_RS18340 at 481.056 kb on + strand, within ABZR87_RS18340 at 481.509 kb on + strand, within ABZR87_RS18340 at 481.509 kb on + strand, within ABZR87_RS18340 at 481.510 kb on - strand, within ABZR87_RS18340
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 478,927 + ABZR87_RS18330 0.50 +0.1 478,927 + ABZR87_RS18330 0.50 -0.2 478,928 - ABZR87_RS18330 0.50 -1.0 478,957 + ABZR87_RS18330 0.52 +1.4 478,957 + ABZR87_RS18330 0.52 +0.7 479,023 + ABZR87_RS18330 0.56 +0.3 479,024 - ABZR87_RS18330 0.56 -0.2 479,024 - ABZR87_RS18330 0.56 +0.7 479,149 + ABZR87_RS18330 0.63 -0.1 479,360 - ABZR87_RS18330 0.75 -0.6 479,404 + ABZR87_RS18330 0.78 -0.6 479,404 + ABZR87_RS18330 0.78 +1.0 479,405 - ABZR87_RS18330 0.78 +0.3 479,405 - ABZR87_RS18330 0.78 +0.9 479,405 - ABZR87_RS18330 0.78 -0.4 479,405 - ABZR87_RS18330 0.78 -2.0 479,405 - ABZR87_RS18330 0.78 -0.4 479,405 - ABZR87_RS18330 0.78 -0.1 479,405 - ABZR87_RS18330 0.78 -1.0 479,437 + ABZR87_RS18330 0.80 -1.3 479,496 - ABZR87_RS18330 0.83 -0.1 479,515 + ABZR87_RS18330 0.84 +1.5 479,515 + ABZR87_RS18330 0.84 -0.3 479,516 - ABZR87_RS18330 0.84 +0.5 479,516 - ABZR87_RS18330 0.84 +0.6 479,521 + ABZR87_RS18330 0.85 +0.7 479,521 + ABZR87_RS18330 0.85 -1.5 479,521 + ABZR87_RS18330 0.85 -0.3 479,522 - ABZR87_RS18330 0.85 -0.7 479,522 - ABZR87_RS18330 0.85 +2.1 479,522 - ABZR87_RS18330 0.85 +0.4 479,522 - ABZR87_RS18330 0.85 -0.0 479,523 + ABZR87_RS18330 0.85 +0.6 479,523 + ABZR87_RS18330 0.85 -0.2 479,524 - ABZR87_RS18330 0.85 +1.7 479,524 - ABZR87_RS18330 0.85 +1.1 479,575 + ABZR87_RS18330 0.88 -0.5 479,575 + ABZR87_RS18330 0.88 -0.5 479,576 - ABZR87_RS18330 0.88 +0.0 479,576 - ABZR87_RS18330 0.88 -0.2 479,576 - ABZR87_RS18330 0.88 +0.5 479,576 - ABZR87_RS18330 0.88 -0.4 479,576 - ABZR87_RS18330 0.88 +0.2 479,762 - -0.3 479,777 + +1.1 479,778 - +0.1 479,778 - +0.2 479,778 - +0.4 479,851 - +1.0 480,474 + ABZR87_RS18335 0.88 -0.7 480,474 + ABZR87_RS18335 0.88 -0.5 480,475 - ABZR87_RS18335 0.88 -1.9 480,553 + -0.4 480,603 + -0.8 480,616 + +0.8 480,616 + +0.2 480,616 + -0.2 480,617 - +0.1 480,617 - -0.2 480,617 - +0.3 480,617 - -0.8 480,617 - -0.8 480,639 - +0.1 480,675 + +1.1 480,675 + -0.1 480,675 + -0.3 480,675 + +0.2 480,676 - +0.4 480,676 - -1.2 480,676 - -0.3 480,677 + -0.7 480,678 - -0.4 480,892 - ABZR87_RS18340 0.12 -1.5 480,936 + ABZR87_RS18340 0.16 -3.1 480,936 + ABZR87_RS18340 0.16 -1.7 480,936 + ABZR87_RS18340 0.16 -1.8 480,936 + ABZR87_RS18340 0.16 -0.5 480,937 - ABZR87_RS18340 0.16 +0.4 480,937 - ABZR87_RS18340 0.16 -0.2 480,972 + ABZR87_RS18340 0.20 -0.5 481,056 + ABZR87_RS18340 0.29 -1.2 481,509 + ABZR87_RS18340 0.78 +0.4 481,509 + ABZR87_RS18340 0.78 +0.9 481,510 - ABZR87_RS18340 0.78 -0.3
Or see this region's nucleotide sequence