Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17915

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17905 and ABZR87_RS17910 overlap by 4 nucleotidesABZR87_RS17910 and ABZR87_RS17915 are separated by 71 nucleotidesABZR87_RS17915 and ABZR87_RS17920 are separated by 2 nucleotidesABZR87_RS17920 and ABZR87_RS17925 overlap by 4 nucleotides ABZR87_RS17905: ABZR87_RS17905 - ABC transporter substrate-binding protein, at 373,287 to 374,291 _RS17905 ABZR87_RS17910: ABZR87_RS17910 - IclR family transcriptional regulator, at 374,288 to 375,106 _RS17910 ABZR87_RS17915: ABZR87_RS17915 - CoA transferase, at 375,178 to 376,365 _RS17915 ABZR87_RS17920: ABZR87_RS17920 - citryl-CoA lyase, at 376,368 to 377,222 _RS17920 ABZR87_RS17925: ABZR87_RS17925 - SMP-30/gluconolactonase/LRE family protein, at 377,219 to 378,115 _RS17925 Position (kb) 375 376 377Strain fitness (log2 ratio) -3 -2 -1 0 1at 374.247 kb on + strandat 374.247 kb on + strandat 374.247 kb on + strandat 374.253 kb on - strandat 374.607 kb on - strand, within ABZR87_RS17910at 374.607 kb on - strand, within ABZR87_RS17910at 374.690 kb on + strand, within ABZR87_RS17910at 374.690 kb on + strand, within ABZR87_RS17910at 374.690 kb on + strand, within ABZR87_RS17910at 374.690 kb on + strand, within ABZR87_RS17910at 374.690 kb on + strand, within ABZR87_RS17910at 374.691 kb on - strand, within ABZR87_RS17910at 374.691 kb on - strand, within ABZR87_RS17910at 374.691 kb on - strand, within ABZR87_RS17910at 374.691 kb on - strand, within ABZR87_RS17910at 374.691 kb on - strand, within ABZR87_RS17910at 374.691 kb on - strand, within ABZR87_RS17910at 374.691 kb on - strand, within ABZR87_RS17910at 374.692 kb on + strand, within ABZR87_RS17910at 374.693 kb on - strand, within ABZR87_RS17910at 374.693 kb on - strand, within ABZR87_RS17910at 374.843 kb on + strand, within ABZR87_RS17910at 374.843 kb on + strand, within ABZR87_RS17910at 374.843 kb on + strand, within ABZR87_RS17910at 374.843 kb on + strand, within ABZR87_RS17910at 374.843 kb on + strand, within ABZR87_RS17910at 374.844 kb on - strand, within ABZR87_RS17910at 374.844 kb on - strand, within ABZR87_RS17910at 374.844 kb on - strand, within ABZR87_RS17910at 374.844 kb on - strand, within ABZR87_RS17910at 374.867 kb on + strand, within ABZR87_RS17910at 374.870 kb on + strand, within ABZR87_RS17910at 374.870 kb on + strand, within ABZR87_RS17910at 374.870 kb on + strand, within ABZR87_RS17910at 374.871 kb on - strand, within ABZR87_RS17910at 374.871 kb on - strand, within ABZR87_RS17910at 374.871 kb on - strand, within ABZR87_RS17910at 374.871 kb on - strand, within ABZR87_RS17910at 374.871 kb on - strand, within ABZR87_RS17910at 375.104 kb on + strandat 375.105 kb on - strandat 375.105 kb on - strandat 375.161 kb on + strandat 375.161 kb on + strandat 375.247 kb on + strandat 375.248 kb on - strandat 375.248 kb on - strandat 375.475 kb on + strand, within ABZR87_RS17915at 375.476 kb on - strand, within ABZR87_RS17915at 375.476 kb on - strand, within ABZR87_RS17915at 375.512 kb on - strand, within ABZR87_RS17915at 375.512 kb on - strand, within ABZR87_RS17915at 375.602 kb on - strand, within ABZR87_RS17915at 375.602 kb on - strand, within ABZR87_RS17915at 375.602 kb on - strand, within ABZR87_RS17915at 375.602 kb on - strand, within ABZR87_RS17915at 375.753 kb on + strand, within ABZR87_RS17915at 375.754 kb on - strand, within ABZR87_RS17915at 375.754 kb on - strand, within ABZR87_RS17915at 375.829 kb on + strand, within ABZR87_RS17915at 375.829 kb on + strand, within ABZR87_RS17915at 375.830 kb on - strand, within ABZR87_RS17915at 376.290 kb on + strandat 376.426 kb on - strandat 376.459 kb on + strand, within ABZR87_RS17920at 376.460 kb on - strand, within ABZR87_RS17920at 376.824 kb on + strand, within ABZR87_RS17920at 376.824 kb on + strand, within ABZR87_RS17920at 376.824 kb on + strand, within ABZR87_RS17920at 376.824 kb on + strand, within ABZR87_RS17920at 376.825 kb on - strand, within ABZR87_RS17920at 376.825 kb on - strand, within ABZR87_RS17920at 376.929 kb on + strand, within ABZR87_RS17920at 376.929 kb on + strand, within ABZR87_RS17920at 376.929 kb on + strand, within ABZR87_RS17920at 377.022 kb on + strand, within ABZR87_RS17920at 377.022 kb on + strand, within ABZR87_RS17920at 377.023 kb on - strand, within ABZR87_RS17920at 377.160 kb on + strandat 377.167 kb on - strandat 377.167 kb on - strandat 377.169 kb on - strandat 377.225 kb on + strandat 377.225 kb on + strandat 377.225 kb on + strandat 377.225 kb on + strandat 377.225 kb on + strandat 377.225 kb on + strandat 377.225 kb on + strandat 377.226 kb on - strandat 377.226 kb on - strandat 377.226 kb on - strandat 377.226 kb on - strandat 377.226 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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374,247 + -0.4
374,247 + -0.7
374,247 + +0.1
374,253 - -1.1
374,607 - ABZR87_RS17910 0.39 -1.1
374,607 - ABZR87_RS17910 0.39 -1.2
374,690 + ABZR87_RS17910 0.49 -0.3
374,690 + ABZR87_RS17910 0.49 -0.3
374,690 + ABZR87_RS17910 0.49 -0.9
374,690 + ABZR87_RS17910 0.49 -1.0
374,690 + ABZR87_RS17910 0.49 -0.6
374,691 - ABZR87_RS17910 0.49 -0.3
374,691 - ABZR87_RS17910 0.49 +0.4
374,691 - ABZR87_RS17910 0.49 -3.0
374,691 - ABZR87_RS17910 0.49 -1.1
374,691 - ABZR87_RS17910 0.49 -2.5
374,691 - ABZR87_RS17910 0.49 -1.6
374,691 - ABZR87_RS17910 0.49 -2.5
374,692 + ABZR87_RS17910 0.49 -0.3
374,693 - ABZR87_RS17910 0.49 -1.1
374,693 - ABZR87_RS17910 0.49 +0.3
374,843 + ABZR87_RS17910 0.68 -0.4
374,843 + ABZR87_RS17910 0.68 -2.2
374,843 + ABZR87_RS17910 0.68 +0.7
374,843 + ABZR87_RS17910 0.68 -0.7
374,843 + ABZR87_RS17910 0.68 -0.0
374,844 - ABZR87_RS17910 0.68 -1.6
374,844 - ABZR87_RS17910 0.68 -1.3
374,844 - ABZR87_RS17910 0.68 -2.3
374,844 - ABZR87_RS17910 0.68 -0.9
374,867 + ABZR87_RS17910 0.71 -0.1
374,870 + ABZR87_RS17910 0.71 -1.6
374,870 + ABZR87_RS17910 0.71 +1.1
374,870 + ABZR87_RS17910 0.71 +0.8
374,871 - ABZR87_RS17910 0.71 -0.3
374,871 - ABZR87_RS17910 0.71 -0.1
374,871 - ABZR87_RS17910 0.71 -1.3
374,871 - ABZR87_RS17910 0.71 +0.1
374,871 - ABZR87_RS17910 0.71 -3.3
375,104 + +0.4
375,105 - -0.1
375,105 - -0.5
375,161 + -0.2
375,161 + +0.5
375,247 + -0.4
375,248 - -1.3
375,248 - +0.5
375,475 + ABZR87_RS17915 0.25 +0.2
375,476 - ABZR87_RS17915 0.25 -0.2
375,476 - ABZR87_RS17915 0.25 +0.2
375,512 - ABZR87_RS17915 0.28 -0.0
375,512 - ABZR87_RS17915 0.28 -0.6
375,602 - ABZR87_RS17915 0.36 +0.4
375,602 - ABZR87_RS17915 0.36 -0.8
375,602 - ABZR87_RS17915 0.36 -1.3
375,602 - ABZR87_RS17915 0.36 -1.0
375,753 + ABZR87_RS17915 0.48 -1.4
375,754 - ABZR87_RS17915 0.48 +0.3
375,754 - ABZR87_RS17915 0.48 +0.9
375,829 + ABZR87_RS17915 0.55 +0.2
375,829 + ABZR87_RS17915 0.55 +0.1
375,830 - ABZR87_RS17915 0.55 +0.0
376,290 + -1.2
376,426 - -1.5
376,459 + ABZR87_RS17920 0.11 +0.5
376,460 - ABZR87_RS17920 0.11 +0.3
376,824 + ABZR87_RS17920 0.53 +1.0
376,824 + ABZR87_RS17920 0.53 -0.0
376,824 + ABZR87_RS17920 0.53 +0.4
376,824 + ABZR87_RS17920 0.53 -1.5
376,825 - ABZR87_RS17920 0.53 -0.0
376,825 - ABZR87_RS17920 0.53 -0.6
376,929 + ABZR87_RS17920 0.66 -0.6
376,929 + ABZR87_RS17920 0.66 +0.1
376,929 + ABZR87_RS17920 0.66 -0.9
377,022 + ABZR87_RS17920 0.76 -1.1
377,022 + ABZR87_RS17920 0.76 +0.4
377,023 - ABZR87_RS17920 0.77 +0.7
377,160 + +1.2
377,167 - -0.0
377,167 - -1.6
377,169 - +0.9
377,225 + -0.9
377,225 + -0.5
377,225 + -0.4
377,225 + -1.6
377,225 + -1.0
377,225 + -1.6
377,225 + -1.8
377,226 - -1.5
377,226 - +1.3
377,226 - -0.3
377,226 - +0.6
377,226 - +0.9

Or see this region's nucleotide sequence