Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17745 and ABZR87_RS17750 are separated by 19 nucleotides ABZR87_RS17750 and ABZR87_RS17755 are separated by 28 nucleotides ABZR87_RS17755 and ABZR87_RS17760 are separated by 73 nucleotides ABZR87_RS17760 and ABZR87_RS17765 are separated by 65 nucleotides
ABZR87_RS17745: ABZR87_RS17745 - ABC transporter permease, at 343,012 to 343,800
_RS17745
ABZR87_RS17750: ABZR87_RS17750 - transporter substrate-binding domain-containing protein, at 343,820 to 344,770
_RS17750
ABZR87_RS17755: ABZR87_RS17755 - methionine ABC transporter permease, at 344,799 to 345,443
_RS17755
ABZR87_RS17760: ABZR87_RS17760 - ATP-binding cassette domain-containing protein, at 345,517 to 346,248
_RS17760
ABZR87_RS17765: ABZR87_RS17765 - MetQ/NlpA family lipoprotein, at 346,314 to 347,126
_RS17765
Position (kb) 344
345
346 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 344.090 kb on + strand, within ABZR87_RS17750 at 344.220 kb on + strand, within ABZR87_RS17750 at 344.220 kb on + strand, within ABZR87_RS17750 at 344.221 kb on - strand, within ABZR87_RS17750 at 344.303 kb on + strand, within ABZR87_RS17750 at 344.304 kb on - strand, within ABZR87_RS17750 at 344.378 kb on - strand, within ABZR87_RS17750 at 344.378 kb on - strand, within ABZR87_RS17750 at 344.378 kb on - strand, within ABZR87_RS17750 at 344.406 kb on - strand, within ABZR87_RS17750 at 344.406 kb on - strand, within ABZR87_RS17750 at 344.406 kb on - strand, within ABZR87_RS17750 at 344.406 kb on - strand, within ABZR87_RS17750 at 344.561 kb on + strand, within ABZR87_RS17750 at 344.561 kb on + strand, within ABZR87_RS17750 at 344.915 kb on - strand, within ABZR87_RS17755 at 345.136 kb on - strand, within ABZR87_RS17755 at 345.272 kb on + strand, within ABZR87_RS17755 at 345.273 kb on - strand, within ABZR87_RS17755 at 345.273 kb on - strand, within ABZR87_RS17755 at 345.273 kb on - strand, within ABZR87_RS17755 at 345.282 kb on + strand, within ABZR87_RS17755 at 345.377 kb on - strand, within ABZR87_RS17755 at 345.430 kb on + strand at 345.450 kb on - strand at 345.885 kb on + strand, within ABZR87_RS17760 at 345.886 kb on - strand, within ABZR87_RS17760 at 346.211 kb on + strand at 346.343 kb on - strand at 346.381 kb on + strand at 346.382 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 344,090 + ABZR87_RS17750 0.28 -0.0 344,220 + ABZR87_RS17750 0.42 -0.4 344,220 + ABZR87_RS17750 0.42 -0.3 344,221 - ABZR87_RS17750 0.42 +0.9 344,303 + ABZR87_RS17750 0.51 -0.4 344,304 - ABZR87_RS17750 0.51 +0.2 344,378 - ABZR87_RS17750 0.59 -0.4 344,378 - ABZR87_RS17750 0.59 -0.2 344,378 - ABZR87_RS17750 0.59 +0.1 344,406 - ABZR87_RS17750 0.62 +0.0 344,406 - ABZR87_RS17750 0.62 +1.3 344,406 - ABZR87_RS17750 0.62 +0.1 344,406 - ABZR87_RS17750 0.62 -0.6 344,561 + ABZR87_RS17750 0.78 +0.4 344,561 + ABZR87_RS17750 0.78 -0.8 344,915 - ABZR87_RS17755 0.18 +1.3 345,136 - ABZR87_RS17755 0.52 -0.5 345,272 + ABZR87_RS17755 0.73 +0.7 345,273 - ABZR87_RS17755 0.73 +0.1 345,273 - ABZR87_RS17755 0.73 -0.7 345,273 - ABZR87_RS17755 0.73 +0.2 345,282 + ABZR87_RS17755 0.75 -0.3 345,377 - ABZR87_RS17755 0.90 +0.3 345,430 + -0.2 345,450 - -0.3 345,885 + ABZR87_RS17760 0.50 +0.4 345,886 - ABZR87_RS17760 0.50 -0.2 346,211 + -0.7 346,343 - -0.2 346,381 + +0.3 346,382 - -2.9
Or see this region's nucleotide sequence