Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17650

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17645 and ABZR87_RS17650 are separated by 87 nucleotidesABZR87_RS17650 and ABZR87_RS17655 are separated by 87 nucleotides ABZR87_RS17645: ABZR87_RS17645 - TolC family protein, at 323,766 to 325,226 _RS17645 ABZR87_RS17650: ABZR87_RS17650 - TetR/AcrR family transcriptional regulator, at 325,314 to 325,928 _RS17650 ABZR87_RS17655: ABZR87_RS17655 - efflux RND transporter periplasmic adaptor subunit, at 326,016 to 327,131 _RS17655 Position (kb) 325 326Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 324.616 kb on - strand, within ABZR87_RS17645at 324.616 kb on - strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.668 kb on - strand, within ABZR87_RS17645at 324.668 kb on - strand, within ABZR87_RS17645at 324.668 kb on - strand, within ABZR87_RS17645at 324.668 kb on - strand, within ABZR87_RS17645at 324.668 kb on - strand, within ABZR87_RS17645at 324.668 kb on - strand, within ABZR87_RS17645at 324.669 kb on + strand, within ABZR87_RS17645at 324.733 kb on + strand, within ABZR87_RS17645at 324.733 kb on + strand, within ABZR87_RS17645at 324.826 kb on + strand, within ABZR87_RS17645at 324.886 kb on + strand, within ABZR87_RS17645at 324.887 kb on - strand, within ABZR87_RS17645at 324.887 kb on - strand, within ABZR87_RS17645at 325.153 kb on + strandat 325.153 kb on + strandat 325.153 kb on + strandat 325.153 kb on + strandat 325.153 kb on + strandat 325.153 kb on + strandat 325.153 kb on + strandat 325.154 kb on - strandat 325.154 kb on - strandat 325.154 kb on - strandat 325.206 kb on - strandat 325.206 kb on - strandat 325.301 kb on + strandat 325.410 kb on + strand, within ABZR87_RS17650at 325.470 kb on + strand, within ABZR87_RS17650at 325.470 kb on + strand, within ABZR87_RS17650at 325.471 kb on - strand, within ABZR87_RS17650at 325.471 kb on - strand, within ABZR87_RS17650at 325.471 kb on - strand, within ABZR87_RS17650at 325.471 kb on - strand, within ABZR87_RS17650at 325.471 kb on - strand, within ABZR87_RS17650at 325.471 kb on - strand, within ABZR87_RS17650at 325.476 kb on + strand, within ABZR87_RS17650at 325.476 kb on + strand, within ABZR87_RS17650at 325.710 kb on + strand, within ABZR87_RS17650at 325.815 kb on + strand, within ABZR87_RS17650at 325.815 kb on + strand, within ABZR87_RS17650at 325.833 kb on + strand, within ABZR87_RS17650at 325.833 kb on + strand, within ABZR87_RS17650at 325.834 kb on - strand, within ABZR87_RS17650at 325.869 kb on + strandat 325.869 kb on + strandat 325.870 kb on - strandat 325.870 kb on - strandat 326.036 kb on + strandat 326.037 kb on - strandat 326.042 kb on + strandat 326.042 kb on + strandat 326.043 kb on - strandat 326.043 kb on - strandat 326.043 kb on - strandat 326.430 kb on + strand, within ABZR87_RS17655at 326.431 kb on - strand, within ABZR87_RS17655at 326.431 kb on - strand, within ABZR87_RS17655at 326.641 kb on + strand, within ABZR87_RS17655at 326.641 kb on + strand, within ABZR87_RS17655at 326.709 kb on + strand, within ABZR87_RS17655at 326.723 kb on - strand, within ABZR87_RS17655at 326.787 kb on + strand, within ABZR87_RS17655at 326.788 kb on - strand, within ABZR87_RS17655at 326.788 kb on - strand, within ABZR87_RS17655at 326.788 kb on - strand, within ABZR87_RS17655at 326.788 kb on - strand, within ABZR87_RS17655at 326.833 kb on + strand, within ABZR87_RS17655at 326.927 kb on - strand, within ABZR87_RS17655

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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324,616 - ABZR87_RS17645 0.58 -0.3
324,616 - ABZR87_RS17645 0.58 +0.4
324,667 + ABZR87_RS17645 0.62 +0.1
324,667 + ABZR87_RS17645 0.62 +1.2
324,667 + ABZR87_RS17645 0.62 -0.7
324,667 + ABZR87_RS17645 0.62 +0.4
324,667 + ABZR87_RS17645 0.62 +0.6
324,667 + ABZR87_RS17645 0.62 -0.6
324,667 + ABZR87_RS17645 0.62 -0.1
324,667 + ABZR87_RS17645 0.62 +0.5
324,667 + ABZR87_RS17645 0.62 +0.7
324,668 - ABZR87_RS17645 0.62 +1.2
324,668 - ABZR87_RS17645 0.62 -0.8
324,668 - ABZR87_RS17645 0.62 +0.9
324,668 - ABZR87_RS17645 0.62 -0.5
324,668 - ABZR87_RS17645 0.62 +0.6
324,668 - ABZR87_RS17645 0.62 +0.6
324,669 + ABZR87_RS17645 0.62 -0.4
324,733 + ABZR87_RS17645 0.66 -0.1
324,733 + ABZR87_RS17645 0.66 -0.2
324,826 + ABZR87_RS17645 0.73 +0.8
324,886 + ABZR87_RS17645 0.77 -1.1
324,887 - ABZR87_RS17645 0.77 -0.5
324,887 - ABZR87_RS17645 0.77 +0.7
325,153 + +1.0
325,153 + -0.2
325,153 + +3.0
325,153 + +0.2
325,153 + -0.6
325,153 + +0.2
325,153 + +0.0
325,154 - +1.0
325,154 - +0.3
325,154 - +0.2
325,206 - +0.9
325,206 - -0.9
325,301 + +0.4
325,410 + ABZR87_RS17650 0.16 -0.0
325,470 + ABZR87_RS17650 0.25 -0.2
325,470 + ABZR87_RS17650 0.25 -2.1
325,471 - ABZR87_RS17650 0.26 -0.8
325,471 - ABZR87_RS17650 0.26 -2.8
325,471 - ABZR87_RS17650 0.26 +0.7
325,471 - ABZR87_RS17650 0.26 -3.1
325,471 - ABZR87_RS17650 0.26 -1.0
325,471 - ABZR87_RS17650 0.26 -0.8
325,476 + ABZR87_RS17650 0.26 +0.2
325,476 + ABZR87_RS17650 0.26 -1.4
325,710 + ABZR87_RS17650 0.64 -1.0
325,815 + ABZR87_RS17650 0.81 -2.3
325,815 + ABZR87_RS17650 0.81 +1.3
325,833 + ABZR87_RS17650 0.84 -1.0
325,833 + ABZR87_RS17650 0.84 -0.8
325,834 - ABZR87_RS17650 0.85 +1.0
325,869 + -2.1
325,869 + -0.5
325,870 - +0.0
325,870 - -1.4
326,036 + -0.3
326,037 - +0.3
326,042 + +0.1
326,042 + +0.4
326,043 - -0.0
326,043 - -0.1
326,043 - +1.0
326,430 + ABZR87_RS17655 0.37 +0.6
326,431 - ABZR87_RS17655 0.37 +0.5
326,431 - ABZR87_RS17655 0.37 -1.1
326,641 + ABZR87_RS17655 0.56 +0.2
326,641 + ABZR87_RS17655 0.56 +0.3
326,709 + ABZR87_RS17655 0.62 -1.4
326,723 - ABZR87_RS17655 0.63 -0.4
326,787 + ABZR87_RS17655 0.69 +0.0
326,788 - ABZR87_RS17655 0.69 -0.1
326,788 - ABZR87_RS17655 0.69 -0.0
326,788 - ABZR87_RS17655 0.69 +0.5
326,788 - ABZR87_RS17655 0.69 -1.8
326,833 + ABZR87_RS17655 0.73 +0.5
326,927 - ABZR87_RS17655 0.82 -0.5

Or see this region's nucleotide sequence