Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17525 and ABZR87_RS17530 are separated by 170 nucleotides ABZR87_RS17530 and ABZR87_RS17535 overlap by 1 nucleotides ABZR87_RS17535 and ABZR87_RS17540 are separated by 5 nucleotides
ABZR87_RS17525: ABZR87_RS17525 - helix-turn-helix domain-containing protein, at 294,251 to 294,961
_RS17525
ABZR87_RS17530: ABZR87_RS17530 - diguanylate cyclase, at 295,132 to 295,830
_RS17530
ABZR87_RS17535: ABZR87_RS17535 - NAD(P)-dependent oxidoreductase, at 295,830 to 296,780
_RS17535
ABZR87_RS17540: ABZR87_RS17540 - SMP-30/gluconolactonase/LRE family protein, at 296,786 to 297,736
_RS17540
Position (kb) 295
296
297 Strain fitness (log2 ratio) -1
0
1 at 294.835 kb on - strand, within ABZR87_RS17525 at 294.835 kb on - strand, within ABZR87_RS17525 at 295.038 kb on + strand at 295.064 kb on + strand at 295.064 kb on + strand at 295.066 kb on + strand at 295.761 kb on + strand at 295.828 kb on + strand at 295.828 kb on + strand at 295.828 kb on + strand at 295.829 kb on - strand at 295.829 kb on - strand at 295.829 kb on - strand at 295.829 kb on - strand at 296.002 kb on - strand, within ABZR87_RS17535 at 296.342 kb on + strand, within ABZR87_RS17535 at 296.367 kb on + strand, within ABZR87_RS17535 at 296.368 kb on - strand, within ABZR87_RS17535 at 296.368 kb on - strand, within ABZR87_RS17535 at 296.419 kb on - strand, within ABZR87_RS17535 at 296.655 kb on - strand, within ABZR87_RS17535 at 296.707 kb on - strand at 296.707 kb on - strand at 296.966 kb on + strand, within ABZR87_RS17540 at 296.966 kb on + strand, within ABZR87_RS17540 at 296.966 kb on + strand, within ABZR87_RS17540 at 296.967 kb on - strand, within ABZR87_RS17540 at 296.967 kb on - strand, within ABZR87_RS17540 at 296.967 kb on - strand, within ABZR87_RS17540 at 296.967 kb on - strand, within ABZR87_RS17540 at 297.038 kb on + strand, within ABZR87_RS17540 at 297.150 kb on - strand, within ABZR87_RS17540 at 297.150 kb on - strand, within ABZR87_RS17540 at 297.221 kb on + strand, within ABZR87_RS17540 at 297.222 kb on - strand, within ABZR87_RS17540 at 297.222 kb on - strand, within ABZR87_RS17540 at 297.222 kb on - strand, within ABZR87_RS17540 at 297.365 kb on + strand, within ABZR87_RS17540 at 297.366 kb on - strand, within ABZR87_RS17540 at 297.366 kb on - strand, within ABZR87_RS17540 at 297.449 kb on - strand, within ABZR87_RS17540 at 297.455 kb on + strand, within ABZR87_RS17540 at 297.540 kb on + strand, within ABZR87_RS17540 at 297.541 kb on - strand, within ABZR87_RS17540 at 297.750 kb on + strand at 297.751 kb on - strand at 297.751 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 294,835 - ABZR87_RS17525 0.82 -0.5 294,835 - ABZR87_RS17525 0.82 -0.0 295,038 + +0.7 295,064 + +1.1 295,064 + -1.4 295,066 + +0.2 295,761 + -0.2 295,828 + +0.3 295,828 + -0.3 295,828 + -0.2 295,829 - -0.1 295,829 - -0.3 295,829 - -0.3 295,829 - -0.1 296,002 - ABZR87_RS17535 0.18 -0.7 296,342 + ABZR87_RS17535 0.54 +0.0 296,367 + ABZR87_RS17535 0.56 +0.2 296,368 - ABZR87_RS17535 0.57 -0.1 296,368 - ABZR87_RS17535 0.57 -1.3 296,419 - ABZR87_RS17535 0.62 +0.2 296,655 - ABZR87_RS17535 0.87 -0.6 296,707 - -0.8 296,707 - +0.3 296,966 + ABZR87_RS17540 0.19 -0.6 296,966 + ABZR87_RS17540 0.19 -0.1 296,966 + ABZR87_RS17540 0.19 -0.5 296,967 - ABZR87_RS17540 0.19 +1.5 296,967 - ABZR87_RS17540 0.19 +1.0 296,967 - ABZR87_RS17540 0.19 -0.1 296,967 - ABZR87_RS17540 0.19 -0.6 297,038 + ABZR87_RS17540 0.26 +0.8 297,150 - ABZR87_RS17540 0.38 +0.4 297,150 - ABZR87_RS17540 0.38 +0.4 297,221 + ABZR87_RS17540 0.46 +0.1 297,222 - ABZR87_RS17540 0.46 -1.3 297,222 - ABZR87_RS17540 0.46 +0.1 297,222 - ABZR87_RS17540 0.46 +0.1 297,365 + ABZR87_RS17540 0.61 +0.4 297,366 - ABZR87_RS17540 0.61 +0.9 297,366 - ABZR87_RS17540 0.61 -0.5 297,449 - ABZR87_RS17540 0.70 -0.3 297,455 + ABZR87_RS17540 0.70 +1.0 297,540 + ABZR87_RS17540 0.79 +0.2 297,541 - ABZR87_RS17540 0.79 +0.3 297,750 + -0.2 297,751 - -0.1 297,751 - +0.7
Or see this region's nucleotide sequence