Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17405 and ABZR87_RS17410 are separated by 78 nucleotides ABZR87_RS17410 and ABZR87_RS17415 overlap by 4 nucleotides ABZR87_RS17415 and ABZR87_RS17420 overlap by 4 nucleotides
ABZR87_RS17405: ABZR87_RS17405 - nucleobase:cation symporter-2 family protein, at 263,517 to 264,860
_RS17405
ABZR87_RS17410: ABZR87_RS17410 - GTP-binding protein, at 264,939 to 266,069
_RS17410
ABZR87_RS17415: ABZR87_RS17415 - UbiX family flavin prenyltransferase, at 266,066 to 266,707
_RS17415
ABZR87_RS17420: ABZR87_RS17420 - UbiD family decarboxylase, at 266,704 to 268,095
_RS17420
Position (kb) 264
265
266
267 Strain fitness (log2 ratio) -1
0
1 at 264.555 kb on + strand, within ABZR87_RS17405 at 264.775 kb on + strand at 264.775 kb on + strand at 264.788 kb on + strand at 264.788 kb on + strand at 264.788 kb on + strand at 264.788 kb on + strand at 264.846 kb on + strand at 264.847 kb on - strand at 264.871 kb on + strand at 264.871 kb on + strand at 264.872 kb on - strand at 265.447 kb on + strand, within ABZR87_RS17410 at 265.448 kb on - strand, within ABZR87_RS17410 at 265.550 kb on + strand, within ABZR87_RS17410 at 265.852 kb on + strand, within ABZR87_RS17410 at 265.852 kb on + strand, within ABZR87_RS17410 at 265.853 kb on - strand, within ABZR87_RS17410 at 266.099 kb on - strand at 266.105 kb on + strand at 266.115 kb on - strand at 266.115 kb on - strand at 266.115 kb on - strand at 266.223 kb on + strand, within ABZR87_RS17415 at 266.223 kb on + strand, within ABZR87_RS17415 at 266.234 kb on + strand, within ABZR87_RS17415 at 266.235 kb on - strand, within ABZR87_RS17415 at 266.497 kb on + strand, within ABZR87_RS17415 at 266.497 kb on + strand, within ABZR87_RS17415 at 266.497 kb on + strand, within ABZR87_RS17415 at 266.498 kb on - strand, within ABZR87_RS17415 at 266.498 kb on - strand, within ABZR87_RS17415 at 266.987 kb on + strand, within ABZR87_RS17420 at 267.059 kb on + strand, within ABZR87_RS17420 at 267.059 kb on + strand, within ABZR87_RS17420 at 267.059 kb on + strand, within ABZR87_RS17420 at 267.060 kb on - strand, within ABZR87_RS17420
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 264,555 + ABZR87_RS17405 0.77 -0.9 264,775 + -0.6 264,775 + -0.0 264,788 + -0.6 264,788 + +0.1 264,788 + +1.6 264,788 + +0.2 264,846 + -1.0 264,847 - +1.0 264,871 + +0.3 264,871 + +0.4 264,872 - +0.5 265,447 + ABZR87_RS17410 0.45 -1.3 265,448 - ABZR87_RS17410 0.45 -0.3 265,550 + ABZR87_RS17410 0.54 -0.1 265,852 + ABZR87_RS17410 0.81 -0.1 265,852 + ABZR87_RS17410 0.81 -0.0 265,853 - ABZR87_RS17410 0.81 +0.1 266,099 - -0.4 266,105 + -0.6 266,115 - -1.3 266,115 - +0.1 266,115 - +0.4 266,223 + ABZR87_RS17415 0.24 +0.2 266,223 + ABZR87_RS17415 0.24 -1.6 266,234 + ABZR87_RS17415 0.26 -0.9 266,235 - ABZR87_RS17415 0.26 -1.2 266,497 + ABZR87_RS17415 0.67 -1.3 266,497 + ABZR87_RS17415 0.67 -0.3 266,497 + ABZR87_RS17415 0.67 -0.5 266,498 - ABZR87_RS17415 0.67 -1.2 266,498 - ABZR87_RS17415 0.67 +0.8 266,987 + ABZR87_RS17420 0.20 -0.1 267,059 + ABZR87_RS17420 0.26 -0.7 267,059 + ABZR87_RS17420 0.26 -0.7 267,059 + ABZR87_RS17420 0.26 -0.1 267,060 - ABZR87_RS17420 0.26 +0.0
Or see this region's nucleotide sequence