Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17350 and ABZR87_RS17355 are separated by 168 nucleotides ABZR87_RS17355 and ABZR87_RS17360 are separated by 63 nucleotides ABZR87_RS17360 and ABZR87_RS17365 are separated by 205 nucleotides
ABZR87_RS17350: ABZR87_RS17350 - OXA-60 family carbapenem-hydrolyzing class D beta-lactamase, at 247,474 to 248,289
_RS17350
ABZR87_RS17355: ABZR87_RS17355 - hypothetical protein, at 248,458 to 248,901
_RS17355
ABZR87_RS17360: ABZR87_RS17360 - glucan biosynthesis protein, at 248,965 to 250,578
_RS17360
ABZR87_RS17365: ABZR87_RS17365 - serine hydrolase, at 250,784 to 251,926
_RS17365
Position (kb) 248
249
250
251 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 248.183 kb on - strand, within ABZR87_RS17350 at 248.303 kb on - strand at 248.303 kb on - strand at 248.303 kb on - strand at 248.303 kb on - strand at 248.303 kb on - strand at 248.303 kb on - strand at 248.312 kb on + strand at 248.313 kb on - strand at 248.328 kb on - strand at 248.457 kb on + strand at 248.457 kb on + strand at 248.457 kb on + strand at 248.457 kb on + strand at 248.457 kb on + strand at 248.457 kb on + strand at 248.457 kb on + strand at 248.457 kb on + strand at 248.457 kb on + strand at 248.457 kb on + strand at 248.458 kb on - strand at 248.458 kb on - strand at 248.458 kb on - strand at 248.458 kb on - strand at 248.470 kb on + strand at 248.470 kb on + strand at 248.471 kb on - strand at 248.471 kb on - strand at 248.471 kb on - strand at 248.551 kb on + strand, within ABZR87_RS17355 at 248.552 kb on - strand, within ABZR87_RS17355 at 248.552 kb on - strand, within ABZR87_RS17355 at 248.552 kb on - strand, within ABZR87_RS17355 at 248.791 kb on + strand, within ABZR87_RS17355 at 248.893 kb on + strand at 248.894 kb on - strand at 248.900 kb on - strand at 249.005 kb on + strand at 249.005 kb on + strand at 249.006 kb on - strand at 249.006 kb on - strand at 249.006 kb on - strand at 249.006 kb on - strand at 249.011 kb on + strand at 249.011 kb on + strand at 249.011 kb on + strand at 249.012 kb on - strand at 249.152 kb on + strand, within ABZR87_RS17360 at 249.152 kb on + strand, within ABZR87_RS17360 at 249.152 kb on + strand, within ABZR87_RS17360 at 249.153 kb on - strand, within ABZR87_RS17360 at 249.153 kb on - strand, within ABZR87_RS17360 at 249.153 kb on - strand, within ABZR87_RS17360 at 249.153 kb on - strand, within ABZR87_RS17360 at 249.153 kb on - strand, within ABZR87_RS17360 at 249.153 kb on - strand, within ABZR87_RS17360 at 249.542 kb on + strand, within ABZR87_RS17360 at 249.543 kb on - strand, within ABZR87_RS17360 at 249.746 kb on + strand, within ABZR87_RS17360 at 249.746 kb on + strand, within ABZR87_RS17360 at 249.747 kb on - strand, within ABZR87_RS17360 at 249.854 kb on + strand, within ABZR87_RS17360 at 249.888 kb on + strand, within ABZR87_RS17360 at 249.888 kb on + strand, within ABZR87_RS17360 at 249.889 kb on - strand, within ABZR87_RS17360 at 249.890 kb on + strand, within ABZR87_RS17360 at 249.890 kb on + strand, within ABZR87_RS17360 at 249.891 kb on - strand, within ABZR87_RS17360 at 249.891 kb on - strand, within ABZR87_RS17360 at 249.891 kb on - strand, within ABZR87_RS17360 at 249.891 kb on - strand, within ABZR87_RS17360 at 249.891 kb on - strand, within ABZR87_RS17360 at 249.892 kb on + strand, within ABZR87_RS17360 at 250.022 kb on + strand, within ABZR87_RS17360 at 250.022 kb on + strand, within ABZR87_RS17360 at 250.022 kb on + strand, within ABZR87_RS17360 at 250.022 kb on + strand, within ABZR87_RS17360 at 250.023 kb on - strand, within ABZR87_RS17360 at 250.023 kb on - strand, within ABZR87_RS17360 at 250.047 kb on - strand, within ABZR87_RS17360 at 250.361 kb on + strand, within ABZR87_RS17360 at 250.361 kb on + strand, within ABZR87_RS17360 at 250.361 kb on + strand, within ABZR87_RS17360 at 250.362 kb on - strand, within ABZR87_RS17360 at 250.410 kb on - strand, within ABZR87_RS17360 at 250.578 kb on + strand at 250.578 kb on + strand at 250.578 kb on + strand at 250.578 kb on + strand at 250.578 kb on + strand at 250.578 kb on + strand at 250.578 kb on + strand at 250.578 kb on + strand at 250.579 kb on - strand at 250.579 kb on - strand at 250.579 kb on - strand at 250.579 kb on - strand at 250.579 kb on - strand at 250.579 kb on - strand at 250.579 kb on - strand at 250.579 kb on - strand at 250.579 kb on - strand at 250.594 kb on - strand at 250.594 kb on - strand at 250.604 kb on + strand at 250.604 kb on + strand at 250.605 kb on - strand at 250.753 kb on + strand at 251.028 kb on - strand, within ABZR87_RS17365 at 251.028 kb on - strand, within ABZR87_RS17365 at 251.028 kb on - strand, within ABZR87_RS17365 at 251.028 kb on - strand, within ABZR87_RS17365 at 251.028 kb on - strand, within ABZR87_RS17365 at 251.028 kb on - strand, within ABZR87_RS17365 at 251.360 kb on + strand, within ABZR87_RS17365 at 251.360 kb on + strand, within ABZR87_RS17365 at 251.360 kb on + strand, within ABZR87_RS17365 at 251.360 kb on + strand, within ABZR87_RS17365 at 251.360 kb on + strand, within ABZR87_RS17365 at 251.361 kb on - strand, within ABZR87_RS17365 at 251.361 kb on - strand, within ABZR87_RS17365 at 251.361 kb on - strand, within ABZR87_RS17365 at 251.408 kb on + strand, within ABZR87_RS17365 at 251.409 kb on - strand, within ABZR87_RS17365 at 251.409 kb on - strand, within ABZR87_RS17365 at 251.409 kb on - strand, within ABZR87_RS17365 at 251.409 kb on - strand, within ABZR87_RS17365 at 251.477 kb on + strand, within ABZR87_RS17365 at 251.477 kb on + strand, within ABZR87_RS17365 at 251.478 kb on - strand, within ABZR87_RS17365
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 248,183 - ABZR87_RS17350 0.87 -1.1 248,303 - +0.5 248,303 - -0.3 248,303 - -0.3 248,303 - +0.5 248,303 - -0.0 248,303 - +0.2 248,312 + -0.0 248,313 - +0.4 248,328 - -0.3 248,457 + -1.0 248,457 + -0.4 248,457 + -0.5 248,457 + -0.5 248,457 + +0.1 248,457 + -0.8 248,457 + -0.1 248,457 + +0.3 248,457 + +0.7 248,457 + -0.5 248,458 - +0.5 248,458 - +0.2 248,458 - +0.8 248,458 - +0.8 248,470 + +1.1 248,470 + -0.2 248,471 - +0.8 248,471 - -0.2 248,471 - -0.9 248,551 + ABZR87_RS17355 0.21 +1.0 248,552 - ABZR87_RS17355 0.21 +0.4 248,552 - ABZR87_RS17355 0.21 -0.7 248,552 - ABZR87_RS17355 0.21 -0.1 248,791 + ABZR87_RS17355 0.75 +0.2 248,893 + +0.6 248,894 - +0.9 248,900 - -1.6 249,005 + +0.1 249,005 + -1.2 249,006 - -0.7 249,006 - -0.2 249,006 - -0.8 249,006 - -1.5 249,011 + -1.6 249,011 + -1.7 249,011 + -3.1 249,012 - -0.4 249,152 + ABZR87_RS17360 0.12 -1.2 249,152 + ABZR87_RS17360 0.12 -3.2 249,152 + ABZR87_RS17360 0.12 -1.6 249,153 - ABZR87_RS17360 0.12 +0.5 249,153 - ABZR87_RS17360 0.12 -1.7 249,153 - ABZR87_RS17360 0.12 +0.6 249,153 - ABZR87_RS17360 0.12 -0.5 249,153 - ABZR87_RS17360 0.12 -0.7 249,153 - ABZR87_RS17360 0.12 -0.4 249,542 + ABZR87_RS17360 0.36 -0.6 249,543 - ABZR87_RS17360 0.36 -0.9 249,746 + ABZR87_RS17360 0.48 -2.2 249,746 + ABZR87_RS17360 0.48 -1.1 249,747 - ABZR87_RS17360 0.48 -0.4 249,854 + ABZR87_RS17360 0.55 -3.0 249,888 + ABZR87_RS17360 0.57 +0.6 249,888 + ABZR87_RS17360 0.57 +0.5 249,889 - ABZR87_RS17360 0.57 -1.2 249,890 + ABZR87_RS17360 0.57 -0.3 249,890 + ABZR87_RS17360 0.57 -1.4 249,891 - ABZR87_RS17360 0.57 -0.9 249,891 - ABZR87_RS17360 0.57 -1.0 249,891 - ABZR87_RS17360 0.57 -1.5 249,891 - ABZR87_RS17360 0.57 +1.6 249,891 - ABZR87_RS17360 0.57 -1.6 249,892 + ABZR87_RS17360 0.57 -2.0 250,022 + ABZR87_RS17360 0.65 -0.1 250,022 + ABZR87_RS17360 0.65 -0.6 250,022 + ABZR87_RS17360 0.65 -1.3 250,022 + ABZR87_RS17360 0.65 -1.6 250,023 - ABZR87_RS17360 0.66 -1.2 250,023 - ABZR87_RS17360 0.66 -0.3 250,047 - ABZR87_RS17360 0.67 -2.2 250,361 + ABZR87_RS17360 0.86 -1.9 250,361 + ABZR87_RS17360 0.86 -1.4 250,361 + ABZR87_RS17360 0.86 -1.3 250,362 - ABZR87_RS17360 0.87 -0.3 250,410 - ABZR87_RS17360 0.90 -1.2 250,578 + -0.2 250,578 + -0.7 250,578 + -2.5 250,578 + +0.5 250,578 + -1.5 250,578 + -2.2 250,578 + -0.2 250,578 + -1.8 250,579 - -1.8 250,579 - -0.1 250,579 - +0.2 250,579 - -1.0 250,579 - +0.1 250,579 - +0.8 250,579 - +0.0 250,579 - +0.2 250,579 - -1.3 250,594 - -0.9 250,594 - +0.6 250,604 + +0.3 250,604 + -2.0 250,605 - +0.4 250,753 + -0.1 251,028 - ABZR87_RS17365 0.21 +0.1 251,028 - ABZR87_RS17365 0.21 +1.2 251,028 - ABZR87_RS17365 0.21 +0.2 251,028 - ABZR87_RS17365 0.21 +0.2 251,028 - ABZR87_RS17365 0.21 +0.3 251,028 - ABZR87_RS17365 0.21 -1.0 251,360 + ABZR87_RS17365 0.50 -0.5 251,360 + ABZR87_RS17365 0.50 -0.2 251,360 + ABZR87_RS17365 0.50 -1.0 251,360 + ABZR87_RS17365 0.50 +1.6 251,360 + ABZR87_RS17365 0.50 +0.1 251,361 - ABZR87_RS17365 0.50 -0.2 251,361 - ABZR87_RS17365 0.50 +1.0 251,361 - ABZR87_RS17365 0.50 -0.5 251,408 + ABZR87_RS17365 0.55 -0.4 251,409 - ABZR87_RS17365 0.55 +0.2 251,409 - ABZR87_RS17365 0.55 -1.3 251,409 - ABZR87_RS17365 0.55 -1.0 251,409 - ABZR87_RS17365 0.55 +0.4 251,477 + ABZR87_RS17365 0.61 +0.2 251,477 + ABZR87_RS17365 0.61 +0.9 251,478 - ABZR87_RS17365 0.61 +0.6
Or see this region's nucleotide sequence