Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17140 and ABZR87_RS17145 are separated by 26 nucleotides ABZR87_RS17145 and ABZR87_RS17150 are separated by 47 nucleotides ABZR87_RS17150 and ABZR87_RS17155 overlap by 4 nucleotides
ABZR87_RS17140: ABZR87_RS17140 - LysR family transcriptional regulator, at 190,872 to 191,789
_RS17140
ABZR87_RS17145: ABZR87_RS17145 - AMP nucleosidase, at 191,816 to 193,297
_RS17145
ABZR87_RS17150: ABZR87_RS17150 - ABC transporter permease subunit, at 193,345 to 194,118
_RS17150
ABZR87_RS17155: ABZR87_RS17155 - amino acid ABC transporter permease, at 194,115 to 194,825
_RS17155
Position (kb)
191
192
193
194 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 190.862 kb on + strand at 190.871 kb on + strand at 190.871 kb on + strand at 190.871 kb on + strand at 190.871 kb on + strand at 190.872 kb on - strand at 190.872 kb on - strand at 190.908 kb on + strand at 191.048 kb on + strand, within ABZR87_RS17140 at 191.325 kb on + strand, within ABZR87_RS17140 at 191.326 kb on - strand, within ABZR87_RS17140 at 191.326 kb on - strand, within ABZR87_RS17140 at 191.361 kb on + strand, within ABZR87_RS17140 at 191.941 kb on - strand at 192.015 kb on + strand, within ABZR87_RS17145 at 192.015 kb on + strand, within ABZR87_RS17145 at 192.102 kb on + strand, within ABZR87_RS17145 at 192.103 kb on - strand, within ABZR87_RS17145 at 192.115 kb on - strand, within ABZR87_RS17145 at 192.115 kb on - strand, within ABZR87_RS17145 at 192.115 kb on - strand, within ABZR87_RS17145 at 192.115 kb on - strand, within ABZR87_RS17145 at 192.160 kb on + strand, within ABZR87_RS17145 at 192.303 kb on + strand, within ABZR87_RS17145 at 192.303 kb on + strand, within ABZR87_RS17145 at 192.303 kb on + strand, within ABZR87_RS17145 at 192.303 kb on + strand, within ABZR87_RS17145 at 192.303 kb on + strand, within ABZR87_RS17145 at 192.303 kb on + strand, within ABZR87_RS17145 at 192.304 kb on - strand, within ABZR87_RS17145 at 192.304 kb on - strand, within ABZR87_RS17145 at 192.304 kb on - strand, within ABZR87_RS17145 at 192.321 kb on + strand, within ABZR87_RS17145 at 192.322 kb on - strand, within ABZR87_RS17145 at 192.322 kb on - strand, within ABZR87_RS17145 at 192.322 kb on - strand, within ABZR87_RS17145 at 192.585 kb on + strand, within ABZR87_RS17145 at 192.585 kb on + strand, within ABZR87_RS17145 at 192.585 kb on + strand, within ABZR87_RS17145 at 192.585 kb on + strand, within ABZR87_RS17145 at 192.585 kb on + strand, within ABZR87_RS17145 at 192.586 kb on - strand, within ABZR87_RS17145 at 192.586 kb on - strand, within ABZR87_RS17145 at 192.586 kb on - strand, within ABZR87_RS17145 at 192.586 kb on - strand, within ABZR87_RS17145 at 192.586 kb on - strand, within ABZR87_RS17145 at 192.586 kb on - strand, within ABZR87_RS17145 at 192.645 kb on + strand, within ABZR87_RS17145 at 192.646 kb on - strand, within ABZR87_RS17145 at 192.655 kb on - strand, within ABZR87_RS17145 at 192.705 kb on + strand, within ABZR87_RS17145 at 192.706 kb on - strand, within ABZR87_RS17145 at 192.706 kb on - strand, within ABZR87_RS17145 at 192.706 kb on - strand, within ABZR87_RS17145 at 192.711 kb on + strand, within ABZR87_RS17145 at 192.711 kb on + strand, within ABZR87_RS17145 at 192.712 kb on - strand, within ABZR87_RS17145 at 192.712 kb on - strand, within ABZR87_RS17145 at 192.712 kb on - strand, within ABZR87_RS17145 at 192.789 kb on + strand, within ABZR87_RS17145 at 192.789 kb on + strand, within ABZR87_RS17145 at 192.790 kb on - strand, within ABZR87_RS17145 at 192.790 kb on - strand, within ABZR87_RS17145 at 192.790 kb on - strand, within ABZR87_RS17145 at 192.790 kb on - strand, within ABZR87_RS17145 at 192.790 kb on - strand, within ABZR87_RS17145 at 192.839 kb on - strand, within ABZR87_RS17145 at 192.839 kb on - strand, within ABZR87_RS17145 at 192.957 kb on + strand, within ABZR87_RS17145 at 192.957 kb on + strand, within ABZR87_RS17145 at 192.958 kb on - strand, within ABZR87_RS17145 at 192.958 kb on - strand, within ABZR87_RS17145 at 192.980 kb on + strand, within ABZR87_RS17145 at 192.981 kb on - strand, within ABZR87_RS17145 at 192.987 kb on + strand, within ABZR87_RS17145 at 192.990 kb on + strand, within ABZR87_RS17145 at 192.990 kb on + strand, within ABZR87_RS17145 at 192.990 kb on + strand, within ABZR87_RS17145 at 192.991 kb on - strand, within ABZR87_RS17145 at 193.029 kb on + strand, within ABZR87_RS17145 at 193.041 kb on + strand, within ABZR87_RS17145 at 193.110 kb on + strand, within ABZR87_RS17145 at 193.116 kb on + strand, within ABZR87_RS17145 at 193.116 kb on + strand, within ABZR87_RS17145 at 193.117 kb on - strand, within ABZR87_RS17145 at 193.117 kb on - strand, within ABZR87_RS17145 at 193.200 kb on + strand at 193.200 kb on + strand at 193.201 kb on - strand at 193.201 kb on - strand at 193.276 kb on + strand at 193.276 kb on + strand at 193.309 kb on + strand at 193.310 kb on - strand at 193.346 kb on + strand at 193.346 kb on + strand at 193.347 kb on - strand at 193.347 kb on - strand at 193.347 kb on - strand at 193.490 kb on + strand, within ABZR87_RS17150 at 193.490 kb on + strand, within ABZR87_RS17150 at 193.490 kb on + strand, within ABZR87_RS17150 at 193.491 kb on - strand, within ABZR87_RS17150 at 193.491 kb on - strand, within ABZR87_RS17150 at 193.513 kb on + strand, within ABZR87_RS17150 at 193.513 kb on + strand, within ABZR87_RS17150 at 193.514 kb on - strand, within ABZR87_RS17150 at 193.589 kb on + strand, within ABZR87_RS17150 at 193.589 kb on + strand, within ABZR87_RS17150 at 193.589 kb on + strand, within ABZR87_RS17150 at 193.589 kb on + strand, within ABZR87_RS17150 at 193.650 kb on + strand, within ABZR87_RS17150 at 193.650 kb on + strand, within ABZR87_RS17150 at 193.650 kb on + strand, within ABZR87_RS17150 at 193.651 kb on - strand, within ABZR87_RS17150 at 193.651 kb on - strand, within ABZR87_RS17150 at 193.651 kb on - strand, within ABZR87_RS17150 at 193.775 kb on + strand, within ABZR87_RS17150 at 193.775 kb on + strand, within ABZR87_RS17150 at 193.775 kb on + strand, within ABZR87_RS17150 at 193.775 kb on + strand, within ABZR87_RS17150 at 193.776 kb on - strand, within ABZR87_RS17150 at 193.776 kb on - strand, within ABZR87_RS17150 at 193.776 kb on - strand, within ABZR87_RS17150 at 193.860 kb on - strand, within ABZR87_RS17150 at 193.860 kb on - strand, within ABZR87_RS17150 at 193.860 kb on - strand, within ABZR87_RS17150 at 193.882 kb on + strand, within ABZR87_RS17150 at 194.084 kb on + strand at 194.085 kb on - strand at 194.085 kb on - strand at 194.215 kb on + strand, within ABZR87_RS17155 at 194.215 kb on + strand, within ABZR87_RS17155 at 194.215 kb on + strand, within ABZR87_RS17155 at 194.215 kb on + strand, within ABZR87_RS17155 at 194.215 kb on + strand, within ABZR87_RS17155 at 194.215 kb on + strand, within ABZR87_RS17155 at 194.215 kb on + strand, within ABZR87_RS17155 at 194.215 kb on + strand, within ABZR87_RS17155 at 194.216 kb on - strand, within ABZR87_RS17155 at 194.216 kb on - strand, within ABZR87_RS17155 at 194.216 kb on - strand, within ABZR87_RS17155 at 194.216 kb on - strand, within ABZR87_RS17155 at 194.282 kb on + strand, within ABZR87_RS17155 at 194.283 kb on - strand, within ABZR87_RS17155 at 194.284 kb on + strand, within ABZR87_RS17155 at 194.285 kb on - strand, within ABZR87_RS17155 at 194.285 kb on - strand, within ABZR87_RS17155 at 194.285 kb on - strand, within ABZR87_RS17155 at 194.285 kb on - strand, within ABZR87_RS17155
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 190,862 + -0.1 190,871 + +0.1 190,871 + -1.8 190,871 + +0.2 190,871 + +0.8 190,872 - -1.1 190,872 - -1.4 190,908 + +0.6 191,048 + ABZR87_RS17140 0.19 -0.7 191,325 + ABZR87_RS17140 0.49 +0.5 191,326 - ABZR87_RS17140 0.49 -0.1 191,326 - ABZR87_RS17140 0.49 -0.4 191,361 + ABZR87_RS17140 0.53 +0.1 191,941 - -3.0 192,015 + ABZR87_RS17145 0.13 -1.6 192,015 + ABZR87_RS17145 0.13 -0.9 192,102 + ABZR87_RS17145 0.19 -0.9 192,103 - ABZR87_RS17145 0.19 -2.6 192,115 - ABZR87_RS17145 0.20 -2.3 192,115 - ABZR87_RS17145 0.20 -1.7 192,115 - ABZR87_RS17145 0.20 -1.0 192,115 - ABZR87_RS17145 0.20 -0.9 192,160 + ABZR87_RS17145 0.23 -2.6 192,303 + ABZR87_RS17145 0.33 -2.5 192,303 + ABZR87_RS17145 0.33 -1.3 192,303 + ABZR87_RS17145 0.33 -0.8 192,303 + ABZR87_RS17145 0.33 -0.9 192,303 + ABZR87_RS17145 0.33 -1.7 192,303 + ABZR87_RS17145 0.33 -2.6 192,304 - ABZR87_RS17145 0.33 -2.6 192,304 - ABZR87_RS17145 0.33 -2.4 192,304 - ABZR87_RS17145 0.33 -2.1 192,321 + ABZR87_RS17145 0.34 -0.5 192,322 - ABZR87_RS17145 0.34 -1.2 192,322 - ABZR87_RS17145 0.34 -1.6 192,322 - ABZR87_RS17145 0.34 -2.4 192,585 + ABZR87_RS17145 0.52 -2.1 192,585 + ABZR87_RS17145 0.52 -1.8 192,585 + ABZR87_RS17145 0.52 -0.5 192,585 + ABZR87_RS17145 0.52 -1.1 192,585 + ABZR87_RS17145 0.52 -1.4 192,586 - ABZR87_RS17145 0.52 -0.9 192,586 - ABZR87_RS17145 0.52 -2.5 192,586 - ABZR87_RS17145 0.52 -0.9 192,586 - ABZR87_RS17145 0.52 -2.2 192,586 - ABZR87_RS17145 0.52 -3.9 192,586 - ABZR87_RS17145 0.52 -1.5 192,645 + ABZR87_RS17145 0.56 -1.6 192,646 - ABZR87_RS17145 0.56 -1.3 192,655 - ABZR87_RS17145 0.57 +0.2 192,705 + ABZR87_RS17145 0.60 -1.9 192,706 - ABZR87_RS17145 0.60 -1.1 192,706 - ABZR87_RS17145 0.60 -1.2 192,706 - ABZR87_RS17145 0.60 -1.7 192,711 + ABZR87_RS17145 0.60 +1.1 192,711 + ABZR87_RS17145 0.60 -1.4 192,712 - ABZR87_RS17145 0.60 -4.1 192,712 - ABZR87_RS17145 0.60 -1.5 192,712 - ABZR87_RS17145 0.60 -0.6 192,789 + ABZR87_RS17145 0.66 -0.4 192,789 + ABZR87_RS17145 0.66 -0.8 192,790 - ABZR87_RS17145 0.66 -1.8 192,790 - ABZR87_RS17145 0.66 +0.4 192,790 - ABZR87_RS17145 0.66 -2.4 192,790 - ABZR87_RS17145 0.66 -0.9 192,790 - ABZR87_RS17145 0.66 -2.1 192,839 - ABZR87_RS17145 0.69 -1.8 192,839 - ABZR87_RS17145 0.69 -0.6 192,957 + ABZR87_RS17145 0.77 -2.1 192,957 + ABZR87_RS17145 0.77 -2.3 192,958 - ABZR87_RS17145 0.77 -1.5 192,958 - ABZR87_RS17145 0.77 -1.3 192,980 + ABZR87_RS17145 0.79 -2.7 192,981 - ABZR87_RS17145 0.79 -0.6 192,987 + ABZR87_RS17145 0.79 -3.2 192,990 + ABZR87_RS17145 0.79 -2.5 192,990 + ABZR87_RS17145 0.79 -1.2 192,990 + ABZR87_RS17145 0.79 -3.3 192,991 - ABZR87_RS17145 0.79 -1.5 193,029 + ABZR87_RS17145 0.82 -0.9 193,041 + ABZR87_RS17145 0.83 -1.1 193,110 + ABZR87_RS17145 0.87 -1.0 193,116 + ABZR87_RS17145 0.88 -0.4 193,116 + ABZR87_RS17145 0.88 +2.0 193,117 - ABZR87_RS17145 0.88 -1.5 193,117 - ABZR87_RS17145 0.88 -2.9 193,200 + -1.4 193,200 + -2.0 193,201 - -3.6 193,201 - -2.0 193,276 + -2.1 193,276 + -2.6 193,309 + -0.1 193,310 - +0.4 193,346 + +2.3 193,346 + -0.3 193,347 - +0.3 193,347 - +0.8 193,347 - -1.4 193,490 + ABZR87_RS17150 0.19 +0.1 193,490 + ABZR87_RS17150 0.19 -0.8 193,490 + ABZR87_RS17150 0.19 -0.3 193,491 - ABZR87_RS17150 0.19 -0.1 193,491 - ABZR87_RS17150 0.19 -0.9 193,513 + ABZR87_RS17150 0.22 -0.3 193,513 + ABZR87_RS17150 0.22 +0.0 193,514 - ABZR87_RS17150 0.22 -0.3 193,589 + ABZR87_RS17150 0.32 -0.4 193,589 + ABZR87_RS17150 0.32 +0.3 193,589 + ABZR87_RS17150 0.32 +0.1 193,589 + ABZR87_RS17150 0.32 -0.8 193,650 + ABZR87_RS17150 0.39 -0.8 193,650 + ABZR87_RS17150 0.39 +0.3 193,650 + ABZR87_RS17150 0.39 -0.8 193,651 - ABZR87_RS17150 0.40 -0.3 193,651 - ABZR87_RS17150 0.40 -1.2 193,651 - ABZR87_RS17150 0.40 -1.5 193,775 + ABZR87_RS17150 0.56 +0.7 193,775 + ABZR87_RS17150 0.56 +1.4 193,775 + ABZR87_RS17150 0.56 -1.0 193,775 + ABZR87_RS17150 0.56 +1.0 193,776 - ABZR87_RS17150 0.56 -1.9 193,776 - ABZR87_RS17150 0.56 +0.0 193,776 - ABZR87_RS17150 0.56 -2.4 193,860 - ABZR87_RS17150 0.67 +0.2 193,860 - ABZR87_RS17150 0.67 -0.4 193,860 - ABZR87_RS17150 0.67 +0.8 193,882 + ABZR87_RS17150 0.69 -0.7 194,084 + +0.0 194,085 - -0.6 194,085 - -1.3 194,215 + ABZR87_RS17155 0.14 +0.3 194,215 + ABZR87_RS17155 0.14 +1.5 194,215 + ABZR87_RS17155 0.14 +0.2 194,215 + ABZR87_RS17155 0.14 +0.6 194,215 + ABZR87_RS17155 0.14 +0.9 194,215 + ABZR87_RS17155 0.14 -0.6 194,215 + ABZR87_RS17155 0.14 -0.8 194,215 + ABZR87_RS17155 0.14 +0.1 194,216 - ABZR87_RS17155 0.14 -0.4 194,216 - ABZR87_RS17155 0.14 +0.1 194,216 - ABZR87_RS17155 0.14 -0.7 194,216 - ABZR87_RS17155 0.14 -1.2 194,282 + ABZR87_RS17155 0.23 +0.7 194,283 - ABZR87_RS17155 0.24 -0.5 194,284 + ABZR87_RS17155 0.24 -0.0 194,285 - ABZR87_RS17155 0.24 +0.8 194,285 - ABZR87_RS17155 0.24 -1.6 194,285 - ABZR87_RS17155 0.24 -0.0 194,285 - ABZR87_RS17155 0.24 +0.2
Or see this region's nucleotide sequence