Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16900 and ABZR87_RS16905 are separated by 18 nucleotides ABZR87_RS16905 and ABZR87_RS16910 are separated by 110 nucleotides ABZR87_RS16910 and ABZR87_RS16915 are separated by 197 nucleotides
ABZR87_RS16900: ABZR87_RS16900 - EAL domain-containing protein, at 147,539 to 149,710
_RS16900
ABZR87_RS16905: ABZR87_RS16905 - hypothetical protein, at 149,729 to 150,361
_RS16905
ABZR87_RS16910: ABZR87_RS16910 - hypothetical protein, at 150,472 to 150,990
_RS16910
ABZR87_RS16915: ABZR87_RS16915 - ABC transporter substrate-binding protein, at 151,188 to 152,291
_RS16915
Position (kb) 149
150
151 Strain fitness (log2 ratio) -2
-1
0
1 at 148.772 kb on + strand, within ABZR87_RS16900 at 148.772 kb on + strand, within ABZR87_RS16900 at 148.773 kb on - strand, within ABZR87_RS16900 at 149.127 kb on + strand, within ABZR87_RS16900 at 149.127 kb on + strand, within ABZR87_RS16900 at 149.128 kb on - strand, within ABZR87_RS16900 at 149.128 kb on - strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.411 kb on - strand, within ABZR87_RS16900 at 149.411 kb on - strand, within ABZR87_RS16900 at 149.423 kb on + strand, within ABZR87_RS16900 at 149.423 kb on + strand, within ABZR87_RS16900 at 149.424 kb on - strand, within ABZR87_RS16900 at 149.624 kb on + strand at 149.625 kb on - strand at 149.793 kb on + strand, within ABZR87_RS16905 at 149.922 kb on + strand, within ABZR87_RS16905 at 149.922 kb on + strand, within ABZR87_RS16905 at 150.102 kb on + strand, within ABZR87_RS16905 at 150.102 kb on + strand, within ABZR87_RS16905 at 150.103 kb on - strand, within ABZR87_RS16905 at 150.103 kb on - strand, within ABZR87_RS16905 at 150.159 kb on + strand, within ABZR87_RS16905 at 150.160 kb on - strand, within ABZR87_RS16905 at 150.160 kb on - strand, within ABZR87_RS16905 at 150.160 kb on - strand, within ABZR87_RS16905 at 150.160 kb on - strand, within ABZR87_RS16905 at 150.411 kb on + strand at 150.411 kb on + strand at 150.412 kb on + strand at 150.458 kb on + strand at 150.458 kb on + strand at 150.458 kb on + strand at 150.459 kb on - strand at 150.473 kb on + strand at 150.474 kb on - strand at 150.566 kb on + strand, within ABZR87_RS16910 at 150.567 kb on - strand, within ABZR87_RS16910 at 150.567 kb on - strand, within ABZR87_RS16910 at 150.743 kb on + strand, within ABZR87_RS16910 at 150.743 kb on + strand, within ABZR87_RS16910 at 150.744 kb on - strand, within ABZR87_RS16910 at 150.744 kb on - strand, within ABZR87_RS16910 at 150.744 kb on - strand, within ABZR87_RS16910 at 150.872 kb on + strand, within ABZR87_RS16910 at 150.873 kb on - strand, within ABZR87_RS16910 at 150.911 kb on + strand, within ABZR87_RS16910 at 150.912 kb on - strand, within ABZR87_RS16910 at 150.983 kb on + strand at 150.983 kb on + strand at 150.983 kb on + strand at 150.983 kb on + strand at 150.984 kb on - strand at 150.984 kb on - strand at 151.036 kb on + strand at 151.036 kb on + strand at 151.036 kb on + strand at 151.037 kb on - strand at 151.230 kb on + strand at 151.231 kb on - strand at 151.234 kb on + strand at 151.234 kb on + strand at 151.235 kb on - strand at 151.235 kb on - strand at 151.265 kb on - strand at 151.265 kb on - strand at 151.265 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 148,772 + ABZR87_RS16900 0.57 +1.6 148,772 + ABZR87_RS16900 0.57 +0.4 148,773 - ABZR87_RS16900 0.57 +0.6 149,127 + ABZR87_RS16900 0.73 -0.7 149,127 + ABZR87_RS16900 0.73 -0.2 149,128 - ABZR87_RS16900 0.73 +1.0 149,128 - ABZR87_RS16900 0.73 -0.2 149,410 + ABZR87_RS16900 0.86 +0.4 149,410 + ABZR87_RS16900 0.86 -0.7 149,410 + ABZR87_RS16900 0.86 +0.6 149,410 + ABZR87_RS16900 0.86 -1.3 149,410 + ABZR87_RS16900 0.86 +0.0 149,410 + ABZR87_RS16900 0.86 +1.5 149,410 + ABZR87_RS16900 0.86 -1.3 149,410 + ABZR87_RS16900 0.86 +0.1 149,410 + ABZR87_RS16900 0.86 +0.6 149,411 - ABZR87_RS16900 0.86 -0.5 149,411 - ABZR87_RS16900 0.86 -0.2 149,423 + ABZR87_RS16900 0.87 -0.2 149,423 + ABZR87_RS16900 0.87 -0.3 149,424 - ABZR87_RS16900 0.87 -0.2 149,624 + -1.6 149,625 - -0.8 149,793 + ABZR87_RS16905 0.10 +0.0 149,922 + ABZR87_RS16905 0.30 -2.3 149,922 + ABZR87_RS16905 0.30 +0.8 150,102 + ABZR87_RS16905 0.59 -0.8 150,102 + ABZR87_RS16905 0.59 -0.7 150,103 - ABZR87_RS16905 0.59 +0.1 150,103 - ABZR87_RS16905 0.59 -0.4 150,159 + ABZR87_RS16905 0.68 -0.2 150,160 - ABZR87_RS16905 0.68 -0.2 150,160 - ABZR87_RS16905 0.68 -0.7 150,160 - ABZR87_RS16905 0.68 +1.1 150,160 - ABZR87_RS16905 0.68 -0.7 150,411 + -1.1 150,411 + +0.1 150,412 + +0.9 150,458 + +0.0 150,458 + -0.4 150,458 + +0.1 150,459 - +0.1 150,473 + +0.2 150,474 - -1.8 150,566 + ABZR87_RS16910 0.18 -0.2 150,567 - ABZR87_RS16910 0.18 -0.4 150,567 - ABZR87_RS16910 0.18 +0.8 150,743 + ABZR87_RS16910 0.52 -1.2 150,743 + ABZR87_RS16910 0.52 +0.3 150,744 - ABZR87_RS16910 0.52 -0.6 150,744 - ABZR87_RS16910 0.52 -0.5 150,744 - ABZR87_RS16910 0.52 +0.1 150,872 + ABZR87_RS16910 0.77 -1.0 150,873 - ABZR87_RS16910 0.77 +0.5 150,911 + ABZR87_RS16910 0.85 -0.4 150,912 - ABZR87_RS16910 0.85 +0.6 150,983 + -1.0 150,983 + +1.2 150,983 + -1.4 150,983 + -0.6 150,984 - +0.3 150,984 - -0.9 151,036 + +0.4 151,036 + -0.6 151,036 + -0.1 151,037 - -0.3 151,230 + -0.5 151,231 - +0.0 151,234 + -1.5 151,234 + -0.5 151,235 - -0.1 151,235 - -1.2 151,265 - +0.7 151,265 - -0.3 151,265 - +0.7
Or see this region's nucleotide sequence