Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16730 and ABZR87_RS16735 overlap by 4 nucleotides ABZR87_RS16735 and ABZR87_RS16740 are separated by 276 nucleotides
ABZR87_RS16730: ABZR87_RS16730 - 2-methylaconitate cis-trans isomerase PrpF, at 101,854 to 103,038
_RS16730
ABZR87_RS16735: ABZR87_RS16735 - Fe/S-dependent 2-methylisocitrate dehydratase AcnD, at 103,035 to 105,632
_RS16735
ABZR87_RS16740: ABZR87_RS16740 - 2-methylcitrate synthase, at 105,909 to 107,078
_RS16740
Position (kb) 103
104
105
106 Strain fitness (log2 ratio) -2
-1
0
1 at 102.173 kb on + strand, within ABZR87_RS16730 at 102.173 kb on + strand, within ABZR87_RS16730 at 102.173 kb on + strand, within ABZR87_RS16730 at 102.174 kb on - strand, within ABZR87_RS16730 at 102.174 kb on - strand, within ABZR87_RS16730 at 102.174 kb on - strand, within ABZR87_RS16730 at 102.345 kb on - strand, within ABZR87_RS16730 at 102.782 kb on + strand, within ABZR87_RS16730 at 102.782 kb on + strand, within ABZR87_RS16730 at 102.783 kb on - strand, within ABZR87_RS16730 at 102.783 kb on - strand, within ABZR87_RS16730 at 102.783 kb on - strand, within ABZR87_RS16730 at 102.783 kb on - strand, within ABZR87_RS16730 at 103.001 kb on + strand at 103.001 kb on + strand at 103.001 kb on + strand at 103.001 kb on + strand at 103.001 kb on + strand at 103.001 kb on + strand at 103.001 kb on + strand at 103.002 kb on - strand at 103.002 kb on - strand at 103.002 kb on - strand at 103.002 kb on - strand at 103.002 kb on - strand at 103.103 kb on - strand at 103.103 kb on - strand at 103.408 kb on + strand, within ABZR87_RS16735 at 103.453 kb on + strand, within ABZR87_RS16735 at 103.453 kb on + strand, within ABZR87_RS16735 at 103.453 kb on + strand, within ABZR87_RS16735 at 103.453 kb on + strand, within ABZR87_RS16735 at 103.454 kb on - strand, within ABZR87_RS16735 at 103.454 kb on - strand, within ABZR87_RS16735 at 103.454 kb on - strand, within ABZR87_RS16735 at 103.618 kb on + strand, within ABZR87_RS16735 at 103.618 kb on + strand, within ABZR87_RS16735 at 103.619 kb on - strand, within ABZR87_RS16735 at 103.619 kb on - strand, within ABZR87_RS16735 at 103.660 kb on + strand, within ABZR87_RS16735 at 103.660 kb on + strand, within ABZR87_RS16735 at 103.660 kb on + strand, within ABZR87_RS16735 at 103.660 kb on + strand, within ABZR87_RS16735 at 103.792 kb on + strand, within ABZR87_RS16735 at 103.810 kb on + strand, within ABZR87_RS16735 at 103.810 kb on + strand, within ABZR87_RS16735 at 103.810 kb on + strand, within ABZR87_RS16735 at 103.810 kb on + strand, within ABZR87_RS16735 at 103.810 kb on + strand, within ABZR87_RS16735 at 103.810 kb on + strand, within ABZR87_RS16735 at 103.810 kb on + strand, within ABZR87_RS16735 at 103.811 kb on - strand, within ABZR87_RS16735 at 103.811 kb on - strand, within ABZR87_RS16735 at 103.811 kb on - strand, within ABZR87_RS16735 at 103.811 kb on - strand, within ABZR87_RS16735 at 103.811 kb on - strand, within ABZR87_RS16735 at 103.811 kb on - strand, within ABZR87_RS16735 at 103.835 kb on - strand, within ABZR87_RS16735 at 103.888 kb on + strand, within ABZR87_RS16735 at 103.888 kb on + strand, within ABZR87_RS16735 at 103.888 kb on + strand, within ABZR87_RS16735 at 103.888 kb on + strand, within ABZR87_RS16735 at 103.888 kb on + strand, within ABZR87_RS16735 at 103.888 kb on + strand, within ABZR87_RS16735 at 103.888 kb on + strand, within ABZR87_RS16735 at 103.888 kb on + strand, within ABZR87_RS16735 at 103.889 kb on - strand, within ABZR87_RS16735 at 103.889 kb on - strand, within ABZR87_RS16735 at 103.889 kb on - strand, within ABZR87_RS16735 at 103.889 kb on - strand, within ABZR87_RS16735 at 103.889 kb on - strand, within ABZR87_RS16735 at 103.889 kb on - strand, within ABZR87_RS16735 at 103.889 kb on - strand, within ABZR87_RS16735 at 103.890 kb on + strand, within ABZR87_RS16735 at 103.891 kb on - strand, within ABZR87_RS16735 at 103.891 kb on - strand, within ABZR87_RS16735 at 104.048 kb on - strand, within ABZR87_RS16735 at 104.146 kb on + strand, within ABZR87_RS16735 at 104.147 kb on - strand, within ABZR87_RS16735 at 104.147 kb on - strand, within ABZR87_RS16735 at 104.284 kb on + strand, within ABZR87_RS16735 at 104.593 kb on + strand, within ABZR87_RS16735 at 104.641 kb on + strand, within ABZR87_RS16735 at 104.641 kb on + strand, within ABZR87_RS16735 at 104.641 kb on + strand, within ABZR87_RS16735 at 104.641 kb on + strand, within ABZR87_RS16735 at 104.641 kb on + strand, within ABZR87_RS16735 at 104.642 kb on - strand, within ABZR87_RS16735 at 104.642 kb on - strand, within ABZR87_RS16735 at 104.642 kb on - strand, within ABZR87_RS16735 at 104.692 kb on + strand, within ABZR87_RS16735 at 104.692 kb on + strand, within ABZR87_RS16735 at 104.807 kb on - strand, within ABZR87_RS16735 at 104.818 kb on + strand, within ABZR87_RS16735 at 105.262 kb on - strand, within ABZR87_RS16735 at 105.496 kb on - strand at 105.496 kb on - strand at 105.526 kb on + strand at 105.526 kb on + strand at 105.526 kb on + strand at 105.526 kb on + strand at 105.526 kb on + strand at 105.527 kb on - strand at 105.527 kb on - strand at 105.527 kb on - strand at 105.527 kb on - strand at 105.542 kb on - strand at 105.587 kb on - strand at 105.587 kb on - strand at 105.747 kb on + strand at 105.839 kb on + strand at 105.903 kb on + strand at 105.904 kb on - strand at 105.904 kb on - strand at 105.958 kb on + strand at 105.958 kb on + strand at 105.958 kb on + strand at 105.958 kb on + strand at 105.958 kb on + strand at 105.958 kb on + strand at 105.959 kb on - strand at 105.959 kb on - strand at 105.959 kb on - strand at 106.084 kb on + strand, within ABZR87_RS16740 at 106.085 kb on - strand, within ABZR87_RS16740 at 106.249 kb on + strand, within ABZR87_RS16740 at 106.250 kb on - strand, within ABZR87_RS16740 at 106.333 kb on + strand, within ABZR87_RS16740 at 106.420 kb on + strand, within ABZR87_RS16740 at 106.420 kb on + strand, within ABZR87_RS16740 at 106.420 kb on + strand, within ABZR87_RS16740 at 106.420 kb on + strand, within ABZR87_RS16740 at 106.421 kb on - strand, within ABZR87_RS16740 at 106.421 kb on - strand, within ABZR87_RS16740 at 106.489 kb on + strand, within ABZR87_RS16740 at 106.489 kb on + strand, within ABZR87_RS16740 at 106.621 kb on + strand, within ABZR87_RS16740 at 106.622 kb on - strand, within ABZR87_RS16740 at 106.622 kb on - strand, within ABZR87_RS16740 at 106.627 kb on + strand, within ABZR87_RS16740 at 106.627 kb on + strand, within ABZR87_RS16740
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 102,173 + ABZR87_RS16730 0.27 +0.4 102,173 + ABZR87_RS16730 0.27 -0.8 102,173 + ABZR87_RS16730 0.27 -0.3 102,174 - ABZR87_RS16730 0.27 -1.2 102,174 - ABZR87_RS16730 0.27 -1.0 102,174 - ABZR87_RS16730 0.27 -0.7 102,345 - ABZR87_RS16730 0.41 -1.3 102,782 + ABZR87_RS16730 0.78 -1.9 102,782 + ABZR87_RS16730 0.78 -1.4 102,783 - ABZR87_RS16730 0.78 +0.5 102,783 - ABZR87_RS16730 0.78 +1.2 102,783 - ABZR87_RS16730 0.78 -2.1 102,783 - ABZR87_RS16730 0.78 -1.2 103,001 + -1.5 103,001 + -0.4 103,001 + -0.9 103,001 + -1.4 103,001 + -0.7 103,001 + +0.4 103,001 + -0.5 103,002 - -0.0 103,002 - +1.4 103,002 - -1.5 103,002 - -2.3 103,002 - +0.8 103,103 - +0.3 103,103 - -1.7 103,408 + ABZR87_RS16735 0.14 -0.0 103,453 + ABZR87_RS16735 0.16 -1.7 103,453 + ABZR87_RS16735 0.16 -0.5 103,453 + ABZR87_RS16735 0.16 -0.2 103,453 + ABZR87_RS16735 0.16 -1.0 103,454 - ABZR87_RS16735 0.16 -0.7 103,454 - ABZR87_RS16735 0.16 -1.0 103,454 - ABZR87_RS16735 0.16 +0.3 103,618 + ABZR87_RS16735 0.22 -1.2 103,618 + ABZR87_RS16735 0.22 -2.3 103,619 - ABZR87_RS16735 0.22 +0.1 103,619 - ABZR87_RS16735 0.22 -1.5 103,660 + ABZR87_RS16735 0.24 -1.2 103,660 + ABZR87_RS16735 0.24 -1.2 103,660 + ABZR87_RS16735 0.24 -1.0 103,660 + ABZR87_RS16735 0.24 -1.5 103,792 + ABZR87_RS16735 0.29 -1.3 103,810 + ABZR87_RS16735 0.30 -0.2 103,810 + ABZR87_RS16735 0.30 -0.7 103,810 + ABZR87_RS16735 0.30 -0.6 103,810 + ABZR87_RS16735 0.30 -1.3 103,810 + ABZR87_RS16735 0.30 -1.0 103,810 + ABZR87_RS16735 0.30 -0.7 103,810 + ABZR87_RS16735 0.30 -0.8 103,811 - ABZR87_RS16735 0.30 -1.3 103,811 - ABZR87_RS16735 0.30 -2.5 103,811 - ABZR87_RS16735 0.30 -2.5 103,811 - ABZR87_RS16735 0.30 -0.6 103,811 - ABZR87_RS16735 0.30 -0.5 103,811 - ABZR87_RS16735 0.30 -0.9 103,835 - ABZR87_RS16735 0.31 -0.6 103,888 + ABZR87_RS16735 0.33 -1.2 103,888 + ABZR87_RS16735 0.33 -1.2 103,888 + ABZR87_RS16735 0.33 -0.8 103,888 + ABZR87_RS16735 0.33 -1.5 103,888 + ABZR87_RS16735 0.33 -1.0 103,888 + ABZR87_RS16735 0.33 -0.1 103,888 + ABZR87_RS16735 0.33 -0.8 103,888 + ABZR87_RS16735 0.33 -0.4 103,889 - ABZR87_RS16735 0.33 -0.3 103,889 - ABZR87_RS16735 0.33 +0.4 103,889 - ABZR87_RS16735 0.33 -2.6 103,889 - ABZR87_RS16735 0.33 -0.5 103,889 - ABZR87_RS16735 0.33 -1.3 103,889 - ABZR87_RS16735 0.33 -1.4 103,889 - ABZR87_RS16735 0.33 -1.6 103,890 + ABZR87_RS16735 0.33 -0.3 103,891 - ABZR87_RS16735 0.33 -0.6 103,891 - ABZR87_RS16735 0.33 -0.8 104,048 - ABZR87_RS16735 0.39 -0.9 104,146 + ABZR87_RS16735 0.43 -2.0 104,147 - ABZR87_RS16735 0.43 -0.4 104,147 - ABZR87_RS16735 0.43 -1.1 104,284 + ABZR87_RS16735 0.48 +0.1 104,593 + ABZR87_RS16735 0.60 -1.7 104,641 + ABZR87_RS16735 0.62 -0.9 104,641 + ABZR87_RS16735 0.62 -0.8 104,641 + ABZR87_RS16735 0.62 -1.3 104,641 + ABZR87_RS16735 0.62 +0.4 104,641 + ABZR87_RS16735 0.62 -0.1 104,642 - ABZR87_RS16735 0.62 -0.5 104,642 - ABZR87_RS16735 0.62 -1.4 104,642 - ABZR87_RS16735 0.62 -0.5 104,692 + ABZR87_RS16735 0.64 -0.1 104,692 + ABZR87_RS16735 0.64 -0.0 104,807 - ABZR87_RS16735 0.68 -1.1 104,818 + ABZR87_RS16735 0.69 -1.1 105,262 - ABZR87_RS16735 0.86 -1.3 105,496 - -0.4 105,496 - +0.6 105,526 + +0.4 105,526 + -1.9 105,526 + +0.5 105,526 + -0.7 105,526 + -0.7 105,527 - -2.3 105,527 - -0.5 105,527 - -0.1 105,527 - -1.1 105,542 - -1.3 105,587 - -0.2 105,587 - +0.1 105,747 + -0.8 105,839 + -0.2 105,903 + +0.1 105,904 - -0.5 105,904 - -0.5 105,958 + -1.1 105,958 + -0.4 105,958 + +0.3 105,958 + -1.2 105,958 + +0.5 105,958 + +0.2 105,959 - -0.1 105,959 - +0.8 105,959 - -0.1 106,084 + ABZR87_RS16740 0.15 -1.3 106,085 - ABZR87_RS16740 0.15 -0.8 106,249 + ABZR87_RS16740 0.29 +0.8 106,250 - ABZR87_RS16740 0.29 -1.6 106,333 + ABZR87_RS16740 0.36 -1.0 106,420 + ABZR87_RS16740 0.44 -0.1 106,420 + ABZR87_RS16740 0.44 +0.7 106,420 + ABZR87_RS16740 0.44 -0.9 106,420 + ABZR87_RS16740 0.44 +0.4 106,421 - ABZR87_RS16740 0.44 -2.7 106,421 - ABZR87_RS16740 0.44 -0.9 106,489 + ABZR87_RS16740 0.50 -0.0 106,489 + ABZR87_RS16740 0.50 -0.2 106,621 + ABZR87_RS16740 0.61 -0.1 106,622 - ABZR87_RS16740 0.61 +0.0 106,622 - ABZR87_RS16740 0.61 +0.1 106,627 + ABZR87_RS16740 0.61 +0.5 106,627 + ABZR87_RS16740 0.61 +0.3
Or see this region's nucleotide sequence