Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16120 and ABZR87_RS16125 are separated by 46 nucleotides ABZR87_RS16125 and ABZR87_RS16130 are separated by 2 nucleotides
ABZR87_RS16120: ABZR87_RS16120 - MFS transporter, at 3,407,229 to 3,408,563
_RS16120
ABZR87_RS16125: ABZR87_RS16125 - heme biosynthesis protein HemY, at 3,408,610 to 3,409,803
_RS16125
ABZR87_RS16130: ABZR87_RS16130 - fused uroporphyrinogen-III synthase HemD/membrane protein HemX, at 3,409,806 to 3,411,920
_RS16130
Position (kb)
3408
3409
3410 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3407.610 kb on + strand, within ABZR87_RS16120 at 3407.610 kb on + strand, within ABZR87_RS16120 at 3407.610 kb on + strand, within ABZR87_RS16120 at 3407.610 kb on + strand, within ABZR87_RS16120 at 3407.610 kb on + strand, within ABZR87_RS16120 at 3407.611 kb on - strand, within ABZR87_RS16120 at 3407.611 kb on - strand, within ABZR87_RS16120 at 3407.611 kb on - strand, within ABZR87_RS16120 at 3407.611 kb on - strand, within ABZR87_RS16120 at 3407.679 kb on + strand, within ABZR87_RS16120 at 3407.679 kb on + strand, within ABZR87_RS16120 at 3407.679 kb on + strand, within ABZR87_RS16120 at 3407.680 kb on - strand, within ABZR87_RS16120 at 3407.800 kb on - strand, within ABZR87_RS16120 at 3407.878 kb on - strand, within ABZR87_RS16120 at 3407.878 kb on - strand, within ABZR87_RS16120 at 3408.030 kb on + strand, within ABZR87_RS16120 at 3408.030 kb on + strand, within ABZR87_RS16120 at 3408.030 kb on + strand, within ABZR87_RS16120 at 3408.031 kb on - strand, within ABZR87_RS16120 at 3408.031 kb on - strand, within ABZR87_RS16120 at 3408.031 kb on - strand, within ABZR87_RS16120 at 3408.054 kb on + strand, within ABZR87_RS16120 at 3408.141 kb on + strand, within ABZR87_RS16120 at 3408.438 kb on + strand at 3408.438 kb on + strand at 3408.439 kb on - strand at 3408.474 kb on - strand at 3408.489 kb on + strand at 3408.489 kb on + strand at 3408.489 kb on + strand at 3408.489 kb on + strand at 3408.489 kb on + strand at 3408.489 kb on + strand at 3408.489 kb on + strand at 3408.489 kb on + strand at 3408.489 kb on + strand at 3408.490 kb on + strand at 3408.490 kb on - strand at 3408.490 kb on - strand at 3408.490 kb on - strand at 3408.490 kb on - strand at 3408.490 kb on - strand at 3408.490 kb on - strand at 3408.490 kb on - strand at 3408.490 kb on - strand at 3408.490 kb on - strand at 3408.490 kb on - strand at 3408.490 kb on - strand at 3408.561 kb on + strand at 3408.561 kb on + strand at 3408.561 kb on + strand at 3408.562 kb on - strand at 3408.562 kb on - strand at 3408.562 kb on - strand at 3408.562 kb on - strand at 3408.743 kb on + strand, within ABZR87_RS16125 at 3408.743 kb on + strand, within ABZR87_RS16125 at 3408.744 kb on - strand, within ABZR87_RS16125 at 3408.744 kb on - strand, within ABZR87_RS16125 at 3408.744 kb on - strand, within ABZR87_RS16125 at 3408.818 kb on + strand, within ABZR87_RS16125 at 3408.818 kb on + strand, within ABZR87_RS16125 at 3408.818 kb on + strand, within ABZR87_RS16125 at 3408.911 kb on + strand, within ABZR87_RS16125 at 3409.128 kb on + strand, within ABZR87_RS16125 at 3409.129 kb on - strand, within ABZR87_RS16125 at 3409.129 kb on - strand, within ABZR87_RS16125 at 3409.581 kb on - strand, within ABZR87_RS16125 at 3409.603 kb on - strand, within ABZR87_RS16125 at 3409.744 kb on - strand at 3409.792 kb on + strand at 3409.792 kb on + strand at 3410.170 kb on - strand, within ABZR87_RS16130 at 3410.324 kb on + strand, within ABZR87_RS16130 at 3410.324 kb on + strand, within ABZR87_RS16130 at 3410.324 kb on + strand, within ABZR87_RS16130 at 3410.377 kb on - strand, within ABZR87_RS16130 at 3410.642 kb on + strand, within ABZR87_RS16130
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 3,407,610 + ABZR87_RS16120 0.29 -0.4 3,407,610 + ABZR87_RS16120 0.29 +0.4 3,407,610 + ABZR87_RS16120 0.29 -2.4 3,407,610 + ABZR87_RS16120 0.29 +0.0 3,407,610 + ABZR87_RS16120 0.29 +0.4 3,407,611 - ABZR87_RS16120 0.29 -0.6 3,407,611 - ABZR87_RS16120 0.29 -0.9 3,407,611 - ABZR87_RS16120 0.29 +0.4 3,407,611 - ABZR87_RS16120 0.29 -2.4 3,407,679 + ABZR87_RS16120 0.34 -0.5 3,407,679 + ABZR87_RS16120 0.34 +0.8 3,407,679 + ABZR87_RS16120 0.34 -0.8 3,407,680 - ABZR87_RS16120 0.34 -1.2 3,407,800 - ABZR87_RS16120 0.43 -1.3 3,407,878 - ABZR87_RS16120 0.49 -1.1 3,407,878 - ABZR87_RS16120 0.49 +0.7 3,408,030 + ABZR87_RS16120 0.60 -0.2 3,408,030 + ABZR87_RS16120 0.60 -0.4 3,408,030 + ABZR87_RS16120 0.60 -0.5 3,408,031 - ABZR87_RS16120 0.60 -1.1 3,408,031 - ABZR87_RS16120 0.60 -0.5 3,408,031 - ABZR87_RS16120 0.60 -0.2 3,408,054 + ABZR87_RS16120 0.62 -0.7 3,408,141 + ABZR87_RS16120 0.68 +0.8 3,408,438 + +0.7 3,408,438 + -0.3 3,408,439 - -0.3 3,408,474 - -0.4 3,408,489 + +0.6 3,408,489 + -1.1 3,408,489 + +0.4 3,408,489 + -0.5 3,408,489 + -0.1 3,408,489 + -0.5 3,408,489 + -0.8 3,408,489 + -1.4 3,408,489 + -0.5 3,408,490 + -0.7 3,408,490 - -0.3 3,408,490 - -1.4 3,408,490 - -1.3 3,408,490 - -0.2 3,408,490 - -1.1 3,408,490 - +0.3 3,408,490 - -0.1 3,408,490 - -0.1 3,408,490 - +0.2 3,408,490 - +0.1 3,408,490 - -0.1 3,408,561 + +0.9 3,408,561 + -0.1 3,408,561 + -1.0 3,408,562 - -0.1 3,408,562 - -0.1 3,408,562 - -0.1 3,408,562 - -0.9 3,408,743 + ABZR87_RS16125 0.11 -1.1 3,408,743 + ABZR87_RS16125 0.11 +0.2 3,408,744 - ABZR87_RS16125 0.11 -4.0 3,408,744 - ABZR87_RS16125 0.11 -0.3 3,408,744 - ABZR87_RS16125 0.11 -0.8 3,408,818 + ABZR87_RS16125 0.17 -0.6 3,408,818 + ABZR87_RS16125 0.17 -0.9 3,408,818 + ABZR87_RS16125 0.17 -1.2 3,408,911 + ABZR87_RS16125 0.25 -1.0 3,409,128 + ABZR87_RS16125 0.43 -1.1 3,409,129 - ABZR87_RS16125 0.43 -1.3 3,409,129 - ABZR87_RS16125 0.43 -0.6 3,409,581 - ABZR87_RS16125 0.81 +0.9 3,409,603 - ABZR87_RS16125 0.83 -0.4 3,409,744 - -0.9 3,409,792 + -0.1 3,409,792 + +1.2 3,410,170 - ABZR87_RS16130 0.17 -1.1 3,410,324 + ABZR87_RS16130 0.24 +0.7 3,410,324 + ABZR87_RS16130 0.24 +1.1 3,410,324 + ABZR87_RS16130 0.24 -1.5 3,410,377 - ABZR87_RS16130 0.27 -2.2 3,410,642 + ABZR87_RS16130 0.40 -1.0
Or see this region's nucleotide sequence