Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16090 and ABZR87_RS16095 are separated by 55 nucleotides ABZR87_RS16095 and ABZR87_RS16100 are separated by 66 nucleotides ABZR87_RS16100 and ABZR87_RS16105 are separated by 300 nucleotides
ABZR87_RS16090: ABZR87_RS16090 - NAD+ synthase, at 3,400,689 to 3,402,326
_RS16090
ABZR87_RS16095: ABZR87_RS16095 - GNAT family N-acetyltransferase, at 3,402,382 to 3,403,614
_RS16095
ABZR87_RS16100: ABZR87_RS16100 - hypothetical protein, at 3,403,681 to 3,403,872
_RS16100
ABZR87_RS16105: ABZR87_RS16105 - inorganic diphosphatase, at 3,404,173 to 3,404,700
_RS16105
Position (kb)
3402
3403
3404 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3402.336 kb on - strand at 3402.336 kb on - strand at 3402.336 kb on - strand at 3402.336 kb on - strand at 3402.336 kb on - strand at 3402.336 kb on - strand at 3402.449 kb on - strand at 3402.544 kb on + strand, within ABZR87_RS16095 at 3402.670 kb on + strand, within ABZR87_RS16095 at 3402.670 kb on + strand, within ABZR87_RS16095 at 3402.671 kb on - strand, within ABZR87_RS16095 at 3402.671 kb on - strand, within ABZR87_RS16095 at 3402.698 kb on - strand, within ABZR87_RS16095 at 3402.698 kb on - strand, within ABZR87_RS16095 at 3402.698 kb on - strand, within ABZR87_RS16095 at 3402.727 kb on + strand, within ABZR87_RS16095 at 3402.727 kb on + strand, within ABZR87_RS16095 at 3402.728 kb on - strand, within ABZR87_RS16095 at 3402.728 kb on - strand, within ABZR87_RS16095 at 3402.728 kb on - strand, within ABZR87_RS16095 at 3402.748 kb on + strand, within ABZR87_RS16095 at 3402.748 kb on + strand, within ABZR87_RS16095 at 3402.748 kb on + strand, within ABZR87_RS16095 at 3403.138 kb on + strand, within ABZR87_RS16095 at 3403.150 kb on + strand, within ABZR87_RS16095 at 3403.175 kb on - strand, within ABZR87_RS16095 at 3403.312 kb on + strand, within ABZR87_RS16095 at 3403.312 kb on + strand, within ABZR87_RS16095 at 3403.312 kb on + strand, within ABZR87_RS16095 at 3403.312 kb on + strand, within ABZR87_RS16095 at 3403.312 kb on + strand, within ABZR87_RS16095 at 3403.313 kb on - strand, within ABZR87_RS16095 at 3403.313 kb on - strand, within ABZR87_RS16095 at 3403.313 kb on - strand, within ABZR87_RS16095 at 3403.313 kb on - strand, within ABZR87_RS16095 at 3403.313 kb on - strand, within ABZR87_RS16095 at 3403.313 kb on - strand, within ABZR87_RS16095 at 3403.313 kb on - strand, within ABZR87_RS16095 at 3403.313 kb on - strand, within ABZR87_RS16095 at 3403.370 kb on - strand, within ABZR87_RS16095 at 3403.370 kb on - strand, within ABZR87_RS16095 at 3403.370 kb on - strand, within ABZR87_RS16095 at 3403.372 kb on + strand, within ABZR87_RS16095 at 3403.372 kb on + strand, within ABZR87_RS16095 at 3403.372 kb on + strand, within ABZR87_RS16095 at 3403.373 kb on - strand, within ABZR87_RS16095 at 3403.388 kb on - strand, within ABZR87_RS16095 at 3403.388 kb on - strand, within ABZR87_RS16095 at 3403.388 kb on - strand, within ABZR87_RS16095 at 3403.558 kb on + strand at 3403.559 kb on - strand at 3403.559 kb on - strand at 3403.559 kb on - strand at 3403.682 kb on + strand at 3403.682 kb on + strand at 3403.682 kb on + strand at 3403.878 kb on + strand at 3403.879 kb on - strand at 3403.912 kb on + strand at 3403.912 kb on + strand at 3403.913 kb on - strand at 3403.913 kb on - strand at 3403.950 kb on - strand at 3403.950 kb on - strand at 3403.981 kb on - strand at 3403.981 kb on - strand at 3403.984 kb on + strand at 3404.018 kb on + strand at 3404.018 kb on + strand at 3404.018 kb on + strand at 3404.018 kb on + strand at 3404.019 kb on - strand at 3404.019 kb on - strand at 3404.019 kb on - strand at 3404.019 kb on - strand at 3404.019 kb on - strand at 3404.019 kb on - strand at 3404.019 kb on - strand at 3404.019 kb on - strand at 3404.019 kb on - strand at 3404.019 kb on - strand at 3404.019 kb on - strand at 3404.019 kb on - strand at 3404.164 kb on + strand at 3404.165 kb on - strand at 3404.174 kb on + strand at 3404.174 kb on + strand at 3404.174 kb on + strand at 3404.175 kb on - strand at 3404.175 kb on - strand at 3404.181 kb on + strand at 3404.181 kb on + strand at 3404.182 kb on - strand at 3404.182 kb on - strand at 3404.182 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 3,402,336 - +0.8 3,402,336 - -1.3 3,402,336 - -0.1 3,402,336 - +0.1 3,402,336 - -1.9 3,402,336 - +1.3 3,402,449 - -0.7 3,402,544 + ABZR87_RS16095 0.13 +1.4 3,402,670 + ABZR87_RS16095 0.23 -0.3 3,402,670 + ABZR87_RS16095 0.23 +0.4 3,402,671 - ABZR87_RS16095 0.23 -2.1 3,402,671 - ABZR87_RS16095 0.23 -0.1 3,402,698 - ABZR87_RS16095 0.26 +0.9 3,402,698 - ABZR87_RS16095 0.26 +0.1 3,402,698 - ABZR87_RS16095 0.26 -0.1 3,402,727 + ABZR87_RS16095 0.28 -0.4 3,402,727 + ABZR87_RS16095 0.28 -0.5 3,402,728 - ABZR87_RS16095 0.28 +1.2 3,402,728 - ABZR87_RS16095 0.28 +1.1 3,402,728 - ABZR87_RS16095 0.28 +2.2 3,402,748 + ABZR87_RS16095 0.30 -1.0 3,402,748 + ABZR87_RS16095 0.30 -0.7 3,402,748 + ABZR87_RS16095 0.30 +0.7 3,403,138 + ABZR87_RS16095 0.61 -0.6 3,403,150 + ABZR87_RS16095 0.62 -0.1 3,403,175 - ABZR87_RS16095 0.64 -0.6 3,403,312 + ABZR87_RS16095 0.75 +1.1 3,403,312 + ABZR87_RS16095 0.75 -1.0 3,403,312 + ABZR87_RS16095 0.75 +0.6 3,403,312 + ABZR87_RS16095 0.75 -0.1 3,403,312 + ABZR87_RS16095 0.75 +0.5 3,403,313 - ABZR87_RS16095 0.76 -0.6 3,403,313 - ABZR87_RS16095 0.76 -1.1 3,403,313 - ABZR87_RS16095 0.76 +1.2 3,403,313 - ABZR87_RS16095 0.76 +0.1 3,403,313 - ABZR87_RS16095 0.76 -1.1 3,403,313 - ABZR87_RS16095 0.76 -0.1 3,403,313 - ABZR87_RS16095 0.76 -0.2 3,403,313 - ABZR87_RS16095 0.76 -0.1 3,403,370 - ABZR87_RS16095 0.80 -0.8 3,403,370 - ABZR87_RS16095 0.80 +0.1 3,403,370 - ABZR87_RS16095 0.80 -0.7 3,403,372 + ABZR87_RS16095 0.80 +0.4 3,403,372 + ABZR87_RS16095 0.80 +0.2 3,403,372 + ABZR87_RS16095 0.80 -0.1 3,403,373 - ABZR87_RS16095 0.80 +0.8 3,403,388 - ABZR87_RS16095 0.82 +0.6 3,403,388 - ABZR87_RS16095 0.82 +1.9 3,403,388 - ABZR87_RS16095 0.82 +0.7 3,403,558 + +1.0 3,403,559 - -3.4 3,403,559 - +0.6 3,403,559 - -0.4 3,403,682 + +0.2 3,403,682 + +0.1 3,403,682 + -0.1 3,403,878 + +1.1 3,403,879 - +0.5 3,403,912 + -0.2 3,403,912 + -0.2 3,403,913 - -1.8 3,403,913 - +0.6 3,403,950 - +0.1 3,403,950 - -1.2 3,403,981 - +2.5 3,403,981 - -0.1 3,403,984 + +0.6 3,404,018 + +0.1 3,404,018 + -0.5 3,404,018 + -0.4 3,404,018 + +0.8 3,404,019 - -0.1 3,404,019 - -0.4 3,404,019 - +0.1 3,404,019 - +0.1 3,404,019 - -0.0 3,404,019 - +0.4 3,404,019 - +0.4 3,404,019 - +0.1 3,404,019 - +0.8 3,404,019 - +0.3 3,404,019 - +0.8 3,404,019 - -0.6 3,404,164 + +0.0 3,404,165 - +0.7 3,404,174 + +0.9 3,404,174 + +1.2 3,404,174 + -0.1 3,404,175 - -1.5 3,404,175 - +0.2 3,404,181 + +0.5 3,404,181 + -1.2 3,404,182 - +0.5 3,404,182 - +0.4 3,404,182 - +0.4
Or see this region's nucleotide sequence